| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KP793109 |
Definition |
Lactococcus phage 936 group phage PhiC0139, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
29032 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
35.36 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALM63456.1 | KP793109_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2696 | 3832 |
| ALM63495.1 | KP793109_p43 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 24497 | 24877 |
| ALM63503.1 | KP793109_p51 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 27903 | 28034 |
| ALM63468.1 | KP793109_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10801 | 13440 |
| ALM63453.1 | KP793109_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 262 | 786 |
| ALM63472.1 | KP793109_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 15736 | 16548 |
| ALM63488.1 | KP793109_p36 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 21519 | 21827 |
| ALM63501.1 | KP793109_p49 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 27461 | 27640 |
| ALM63464.1 | KP793109_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8458 | 9363 |
| ALM63458.1 | KP793109_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4342 | 5523 |
| ALM63485.1 | KP793109_p33 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 20262 | 21152 |
| ALM63476.1 | KP793109_p24 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 18115 | 18273 |
| ALM63479.1 | KP793109_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 18784 | 18972 |
| ALM63490.1 | KP793109_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22331 | 22843 |
| ALM63483.1 | KP793109_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19780 | 20085 |
| ALM63460.1 | KP793109_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5807 | 6121 |
| ALM63475.1 | KP793109_p23 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 17828 | 18097 |
| ALM63474.1 | KP793109_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 16913 | 17659 |
| ALM63505.1 | KP793109_p53 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 28510 | 28677 |
| ALM63498.1 | KP793109_p46 | hypothetical protein | phrog_9199 | unknown function | unknown function | -1 | 26178 | 26339 |
| ALM63482.1 | KP793109_p30 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 19546 | 19743 |
| ALM63481.1 | KP793109_p29 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 19283 | 19471 |
| ALM63504.1 | KP793109_p52 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28031 | 28513 |
| ALM63502.1 | KP793109_p50 | middle expressed protein 1 | phrog_1952 | unknown function | unknown function | 1 | 27770 | 27898 |
| ALM63465.1 | KP793109_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8458 | 9973 |
| ALM63487.1 | KP793109_p35 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 21393 | 21503 |
| ALM63467.1 | KP793109_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10289 | 10801 |
| ALM63480.1 | KP793109_p28 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 18965 | 19219 |
| ALM63494.1 | KP793109_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 23966 | 24367 |
| ALM63473.1 | KP793109_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 16563 | 16916 |
| ALM63493.1 | KP793109_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23431 | 23997 |
| ALM63470.1 | KP793109_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14336 | 15463 |
| ALM63478.1 | KP793109_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 18617 | 18784 |
| ALM63492.1 | KP793109_p40 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23067 | 23426 |
| ALM63459.1 | KP793109_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5544 | 5807 |
| ALM63499.1 | KP793109_p47 | hypothetical protein | phrog_5487 | unknown function | unknown function | -1 | 26381 | 26545 |
| ALM63466.1 | KP793109_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 9994 | 10269 |
| ALM63496.1 | KP793109_p44 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 24934 | 25191 |
| ALM63500.1 | KP793109_p48 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27030 | 27158 |
| ALM63462.1 | KP793109_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6450 | 6815 |
| ALM63484.1 | KP793109_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20085 | 20204 |
| ALM63461.1 | KP793109_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6118 | 6459 |
| ALM63491.1 | KP793109_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 22809 | 23054 |
| ALM63489.1 | KP793109_p37 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 21824 | 22249 |
| ALM63454.1 | KP793109_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 787 | 2409 |
| ALM63469.1 | KP793109_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 13440 | 14336 |
| ALM63457.1 | KP793109_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3813 | 4349 |
| ALM63486.1 | KP793109_p34 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21145 | 21393 |
| ALM63497.1 | KP793109_p45 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 25184 | 26134 |
| ALM63455.1 | KP793109_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2399 | 2683 |
| ALM63463.1 | KP793109_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6872 | 8434 |
| ALM63477.1 | KP793109_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18270 | 18617 |
| ALM63471.1 | KP793109_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 15453 | 15746 |