| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KP793123 |
Definition |
Lactococcus phage 936 group phage Phi4.2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
31375 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
34.48 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALM64163.1 | KP793123_p48 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25745 | 25996 |
| ALM64148.1 | KP793123_p33 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20495 | 20746 |
| ALM64143.1 | KP793123_p28 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 19394 | 19573 |
| ALM64127.1 | KP793123_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 7267 | 8172 |
| ALM64166.1 | KP793123_p51 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 26675 | 27625 |
| ALM64149.1 | KP793123_p34 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 20817 | 21311 |
| ALM64173.1 | KP793123_p58 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 30229 | 30396 |
| ALM64141.1 | KP793123_p26 | HNH endonuclease | phrog_30377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 18749 | 18997 |
| ALM64152.1 | KP793123_p37 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21765 | 22007 |
| ALM64128.1 | KP793123_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 7267 | 8854 |
| ALM64124.1 | KP793123_p9 | strucural protein 2 | phrog_1429 | virion structural protein | head and packaging | 1 | 6246 | 6560 |
| ALM64155.1 | KP793123_p40 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22451 | 22873 |
| ALM64134.1 | KP793123_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 14707 | 14982 |
| ALM64137.1 | KP793123_p22 | holin | phrog_1379 | unknown function | unknown function | 1 | 16942 | 17283 |
| ALM64161.1 | KP793123_p46 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25175 | 25348 |
| ALM64165.1 | KP793123_p50 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26143 | 26538 |
| ALM64154.1 | KP793123_p39 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22152 | 22454 |
| ALM64132.1 | KP793123_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 12672 | 13604 |
| ALM64121.1 | KP793123_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4252 | 4788 |
| ALM64174.1 | KP793123_p59 | middle expressed protein 5 | phrog_6252 | unknown function | unknown function | 1 | 30993 | 31121 |
| ALM64153.1 | KP793123_p38 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 22008 | 22118 |
| ALM64144.1 | KP793123_p29 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19570 | 19917 |
| ALM64120.1 | KP793123_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3135 | 4271 |
| ALM64157.1 | KP793123_p42 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23462 | 23677 |
| ALM64133.1 | KP793123_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 13606 | 14706 |
| ALM64172.1 | KP793123_p57 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29750 | 30232 |
| ALM64139.1 | KP793123_p24 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 18080 | 18589 |
| ALM64125.1 | KP793123_p10 | strucural protein 3 | phrog_1484 | virion structural protein | head and packaging | 1 | 6557 | 6898 |
| ALM64160.1 | KP793123_p45 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24676 | 25188 |
| ALM64170.1 | KP793123_p55 | middle expressed protein 1 | phrog_1952 | unknown function | unknown function | 1 | 29489 | 29617 |
| ALM64168.1 | KP793123_p53 | hypothetical protein | phrog_7915 | unknown function | unknown function | -1 | 28021 | 28719 |
| ALM64119.1 | KP793123_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2838 | 3122 |
| ALM64116.1 | KP793123_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 242 | 766 |
| ALM64118.1 | KP793123_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1226 | 2848 |
| ALM64164.1 | KP793123_p49 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25968 | 26150 |
| ALM64147.1 | KP793123_p32 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20262 | 20453 |
| ALM64126.1 | KP793123_p11 | strucural protein 4 | phrog_1440 | virion structural protein | head and packaging | 1 | 6889 | 7254 |
| ALM64129.1 | KP793123_p14 | strucural protein 5 | phrog_1420 | virion structural protein | head and packaging | 1 | 8875 | 9150 |
| ALM64158.1 | KP793123_p43 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23690 | 24049 |
| ALM64123.1 | KP793123_p8 | strucural protein 1 | phrog_1428 | head-tail connector protein | connector | 1 | 5983 | 6246 |
| ALM64169.1 | KP793123_p54 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 29170 | 29358 |
| ALM64130.1 | KP793123_p15 | strucural protein 6 | phrog_1421 | virion structural protein | head and packaging | 1 | 9170 | 9682 |
| ALM64145.1 | KP793123_p30 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19917 | 20084 |
| ALM64150.1 | KP793123_p35 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 21283 | 21588 |
| ALM64142.1 | KP793123_p27 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19128 | 19397 |
| ALM64171.1 | KP793123_p56 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 29622 | 29753 |
| ALM64146.1 | KP793123_p31 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20084 | 20260 |
| ALM64122.1 | KP793123_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4781 | 5962 |
| ALM64136.1 | KP793123_p21 | receptor binding protein 2 | phrog_1630 | receptor binding tail protein | tail | 1 | 16114 | 16908 |
| ALM64117.1 | KP793123_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 763 | 1224 |
| ALM64156.1 | KP793123_p41 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22953 | 23465 |
| ALM64131.1 | KP793123_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9682 | 12672 |
| ALM64167.1 | KP793123_p52 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 27618 | 27839 |
| ALM64135.1 | KP793123_p20 | receptor binding protein 1 | phrog_22544 | unknown function | unknown function | 1 | 14984 | 16114 |
| ALM64159.1 | KP793123_p44 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24054 | 24689 |
| ALM64162.1 | KP793123_p47 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25395 | 25685 |
| ALM64151.1 | KP793123_p36 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21588 | 21707 |
| ALM64140.1 | KP793123_p25 | HNH endonuclease | phrog_35117 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 18643 | 18804 |
| ALM64138.1 | KP793123_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17280 | 17987 |