| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KP793127 |
Definition |
Lactococcus phage 936 group phage Phi40, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
31631 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
34.87 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALM64386.1 | KP793127_p44 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25199 | 25699 |
| ALM64343.1 | KP793127_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 260 | 784 |
| ALM64394.1 | KP793127_p52 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 29425 | 29613 |
| ALM64353.1 | KP793127_p11 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7450 | 7947 |
| ALM64362.1 | KP793127_p20 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 15475 | 16602 |
| ALM64380.1 | KP793127_p38 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 22290 | 23231 |
| ALM64357.1 | KP793127_p14 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8644 | 10174 |
| ALM64387.1 | KP793127_p45 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25790 | 25963 |
| ALM64389.1 | KP793127_p47 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26297 | 26683 |
| ALM64395.1 | KP793127_p53 | middle expressed protein 1 | phrog_1952 | unknown function | unknown function | 1 | 29744 | 29872 |
| ALM64352.1 | KP793127_p10 | strucural protein 2 | phrog_1429 | virion structural protein | head and packaging | 1 | 7139 | 7453 |
| ALM64348.1 | KP793127_p6 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4046 | 5164 |
| ALM64344.1 | KP793127_p2 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 781 | 1629 |
| ALM64385.1 | KP793127_p43 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24648 | 25214 |
| ALM64368.1 | KP793127_p26 | hypothetical protein | phrog_5087 | unknown function | unknown function | -1 | 19019 | 19276 |
| ALM64346.1 | KP793127_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2119 | 3741 |
| ALM64371.1 | KP793127_p29 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 19840 | 20013 |
| ALM64376.1 | KP793127_p34 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20941 | 21198 |
| ALM64393.1 | KP793127_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28303 | 28563 |
| ALM64382.1 | KP793127_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23551 | 24060 |
| ALM64384.1 | KP793127_p42 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24285 | 24644 |
| ALM64383.1 | KP793127_p41 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24057 | 24272 |
| ALM64388.1 | KP793127_p46 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26010 | 26300 |
| ALM64377.1 | KP793127_p35 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 21374 | 21835 |
| ALM64392.1 | KP793127_p50 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 28034 | 28261 |
| ALM64399.1 | KP793127_p57 | middle expressed protein 5 | phrog_6252 | unknown function | unknown function | 1 | 31436 | 31567 |
| ALM64372.1 | KP793127_p30 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 20016 | 20363 |
| ALM64378.1 | KP793127_p36 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 21807 | 22112 |
| ALM64373.1 | KP793127_p31 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 20363 | 20530 |
| ALM64354.1 | KP793127_p12 | strucural protein 3 | phrog_1484 | virion structural protein | head and packaging | 1 | 7937 | 8275 |
| ALM64356.1 | KP793127_p15 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8644 | 9549 |
| ALM64355.1 | KP793127_p13 | strucural protein 4 | phrog_1440 | virion structural protein | head and packaging | 1 | 8266 | 8631 |
| ALM64366.1 | KP793127_p24 | lysin | phrog_670 | endolysin | lysis | 1 | 18045 | 18767 |
| ALM64350.1 | KP793127_p8 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 5674 | 6855 |
| ALM64396.1 | KP793127_p54 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 29877 | 30008 |
| ALM64347.1 | KP793127_p5 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 3731 | 4015 |
| ALM64349.1 | KP793127_p7 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 5145 | 5681 |
| ALM64361.1 | KP793127_p19 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14000 | 15475 |
| ALM64391.1 | KP793127_p49 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 26990 | 28009 |
| ALM64359.1 | KP793127_p17 | strucural protein 6 | phrog_1421 | virion structural protein | head and packaging | 1 | 10489 | 11001 |
| ALM64360.1 | KP793127_p18 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11001 | 14000 |
| ALM64370.1 | KP793127_p28 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19574 | 19843 |
| ALM64358.1 | KP793127_p16 | strucural protein 5 | phrog_1420 | virion structural protein | head and packaging | 1 | 10194 | 10469 |
| ALM64345.1 | KP793127_p3 | DNA N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 1685 | 2107 |
| ALM64397.1 | KP793127_p55 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30005 | 30487 |
| ALM64367.1 | KP793127_p25 | hypothetical protein | phrog_3775 | transglycosylase | other | -1 | 18813 | 18977 |
| ALM64363.1 | KP793127_p21 | strucural protein 7 | phrog_1434 | unknown function | unknown function | 1 | 16592 | 16885 |
| ALM64364.1 | KP793127_p22 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16875 | 17681 |
| ALM64398.1 | KP793127_p56 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 30645 | 30812 |
| ALM64375.1 | KP793127_p33 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20708 | 20899 |
| ALM64369.1 | KP793127_p27 | hypothetical protein | phrog_5152 | unknown function | unknown function | -1 | 19305 | 19553 |
| ALM64374.1 | KP793127_p32 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20530 | 20715 |
| ALM64381.1 | KP793127_p39 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 23224 | 23472 |
| ALM64351.1 | KP793127_p9 | strucural protein 1 | phrog_1428 | head-tail connector protein | connector | 1 | 6876 | 7139 |
| ALM64379.1 | KP793127_p37 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 22113 | 22232 |
| ALM64365.1 | KP793127_p23 | holin | phrog_1379 | unknown function | unknown function | 1 | 17695 | 18048 |
| ALM64390.1 | KP793127_p48 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 26740 | 26997 |