| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KP793129 |
Definition |
Lactococcus phage 936 group phage PhiJF1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
31901 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.57 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALM64473.1 | KP793129_p20 | strucural protein 7 | phrog_1434 | unknown function | unknown function | 1 | 15937 | 16230 |
| ALM64496.1 | KP793129_p43 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24340 | 24975 |
| ALM64460.1 | KP793129_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4618 | 5799 |
| ALM64490.1 | KP793129_p37 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22464 | 22712 |
| ALM64474.1 | KP793129_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16220 | 17014 |
| ALM64478.1 | KP793129_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18624 | 18893 |
| ALM64503.1 | KP793129_p50 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 28142 | 28327 |
| ALM64458.1 | KP793129_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2972 | 4108 |
| ALM64479.1 | KP793129_p26 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 18911 | 19069 |
| ALM64508.1 | KP793129_p55 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 30188 | 30319 |
| ALM64481.1 | KP793129_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19413 | 19646 |
| ALM64492.1 | KP793129_p39 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22857 | 23159 |
| ALM64475.1 | KP793129_p22 | holin | phrog_1379 | unknown function | unknown function | 1 | 17036 | 17389 |
| ALM64488.1 | KP793129_p35 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 21196 | 21519 |
| ALM64456.1 | KP793129_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1063 | 2685 |
| ALM64455.1 | KP793129_p2 | hypothetical protein | phrog_9973 | unknown function | unknown function | 1 | 912 | 1061 |
| ALM64465.1 | KP793129_p12 | strucural protein 4 | phrog_1440 | virion structural protein | head and packaging | 1 | 7129 | 7494 |
| ALM64500.1 | KP793129_p47 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26286 | 26672 |
| ALM64480.1 | KP793129_p27 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19066 | 19413 |
| ALM64497.1 | KP793129_p44 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24972 | 25472 |
| ALM64464.1 | KP793129_p11 | strucural protein 3 | phrog_1484 | virion structural protein | head and packaging | 1 | 6800 | 7138 |
| ALM64482.1 | KP793129_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19758 | 19949 |
| ALM64469.1 | KP793129_p16 | strucural protein 6 | phrog_1421 | virion structural protein | head and packaging | 1 | 10782 | 11294 |
| ALM64491.1 | KP793129_p38 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 22713 | 22823 |
| ALM64489.1 | KP793129_p36 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21575 | 22471 |
| ALM64486.1 | KP793129_p33 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20884 | 21003 |
| ALM64494.1 | KP793129_p41 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23748 | 23963 |
| ALM64454.1 | KP793129_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 280 | 804 |
| ALM64471.1 | KP793129_p18 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 13924 | 14820 |
| ALM64510.1 | KP793129_p57 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 30795 | 30962 |
| ALM64487.1 | KP793129_p34 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 21000 | 21185 |
| ALM64467.1 | KP793129_p14 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 9543 | 10448 |
| ALM64485.1 | KP793129_p32 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20575 | 20883 |
| ALM64504.1 | KP793129_p51 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 28840 | 28968 |
| ALM64477.1 | KP793129_p24 | hypothetical protein | phrog_16598 | unknown function | unknown function | -1 | 18397 | 18510 |
| ALM64493.1 | KP793129_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23242 | 23751 |
| ALM64466.1 | KP793129_p13 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 7538 | 9520 |
| ALM64457.1 | KP793129_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2675 | 2959 |
| ALM64463.1 | KP793129_p10 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6394 | 6810 |
| ALM64484.1 | KP793129_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 20313 | 20561 |
| ALM64459.1 | KP793129_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4089 | 4625 |
| ALM64507.1 | KP793129_p54 | middle expressed protein 1 | phrog_5027 | unknown function | unknown function | 1 | 29956 | 30183 |
| ALM64468.1 | KP793129_p15 | strucural protein 5 | phrog_1420 | virion structural protein | head and packaging | 1 | 10487 | 10762 |
| ALM64509.1 | KP793129_p56 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30316 | 30798 |
| ALM64505.1 | KP793129_p52 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29323 | 29739 |
| ALM64470.1 | KP793129_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11294 | 13924 |
| ALM64506.1 | KP793129_p53 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 29740 | 29925 |
| ALM64511.1 | KP793129_p58 | middle expressed protein 5 | phrog_6252 | unknown function | unknown function | 1 | 31689 | 31817 |
| ALM64476.1 | KP793129_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17386 | 18126 |
| ALM64472.1 | KP793129_p19 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14820 | 15947 |
| ALM64501.1 | KP793129_p48 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 26730 | 26987 |
| ALM64499.1 | KP793129_p46 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25779 | 26162 |
| ALM64461.1 | KP793129_p8 | strucural protein 1 | phrog_1428 | head-tail connector protein | connector | 1 | 5820 | 6083 |
| ALM64502.1 | KP793129_p49 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 27134 | 28084 |
| ALM64495.1 | KP793129_p42 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23976 | 24335 |
| ALM64462.1 | KP793129_p9 | strucural protein 2 | phrog_1429 | virion structural protein | head and packaging | 1 | 6083 | 6397 |
| ALM64498.1 | KP793129_p45 | HNH endonuclease | phrog_5462 | unknown function | unknown function | -1 | 25469 | 25792 |
| ALM64483.1 | KP793129_p30 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19991 | 20242 |