Genomic map of Lactococcus phage 936 group phage PhiJF1 (KP793129)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KP793129
Definition
Lactococcus phage 936 group phage PhiJF1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
PVOG
Length
31901
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
34.57
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ALM64473.1 KP793129_p20 strucural protein 7 phrog_1434 unknown function unknown function 1 15937 16230
ALM64496.1 KP793129_p43 SAK protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24340 24975
ALM64460.1 KP793129_p7 major capsid protein phrog_1393 minor head protein head and packaging 1 4618 5799
ALM64490.1 KP793129_p37 hypothetical protein phrog_1825 DNA methyltransferase other -1 22464 22712
ALM64474.1 KP793129_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16220 17014
ALM64478.1 KP793129_p25 hypothetical protein phrog_1430 unknown function unknown function -1 18624 18893
ALM64503.1 KP793129_p50 hypothetical protein phrog_4505 unknown function unknown function -1 28142 28327
ALM64458.1 KP793129_p5 portal protein phrog_12 portal protein head and packaging 1 2972 4108
ALM64479.1 KP793129_p26 hypothetical protein phrog_3389 unknown function unknown function -1 18911 19069
ALM64508.1 KP793129_p55 middle expressed protein 2 phrog_1436 unknown function unknown function 1 30188 30319
ALM64481.1 KP793129_p28 hypothetical protein phrog_1441 unknown function unknown function -1 19413 19646
ALM64492.1 KP793129_p39 hypothetical protein phrog_1919 unknown function unknown function -1 22857 23159
ALM64475.1 KP793129_p22 holin phrog_1379 unknown function unknown function 1 17036 17389
ALM64488.1 KP793129_p35 hypothetical protein phrog_1083 unknown function unknown function -1 21196 21519
ALM64456.1 KP793129_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1063 2685
ALM64455.1 KP793129_p2 hypothetical protein phrog_9973 unknown function unknown function 1 912 1061
ALM64465.1 KP793129_p12 strucural protein 4 phrog_1440 virion structural protein head and packaging 1 7129 7494
ALM64500.1 KP793129_p47 hypothetical protein phrog_2228 unknown function unknown function -1 26286 26672
ALM64480.1 KP793129_p27 hypothetical protein phrog_1415 unknown function unknown function -1 19066 19413
ALM64497.1 KP793129_p44 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 24972 25472
ALM64464.1 KP793129_p11 strucural protein 3 phrog_1484 virion structural protein head and packaging 1 6800 7138
ALM64482.1 KP793129_p29 hypothetical protein phrog_2530 unknown function unknown function -1 19758 19949
ALM64469.1 KP793129_p16 strucural protein 6 phrog_1421 virion structural protein head and packaging 1 10782 11294
ALM64491.1 KP793129_p38 hypothetical protein phrog_4546 unknown function unknown function -1 22713 22823
ALM64489.1 KP793129_p36 methylase phrog_56 DNA methyltransferase other -1 21575 22471
ALM64486.1 KP793129_p33 hypothetical protein phrog_1508 unknown function unknown function -1 20884 21003
ALM64494.1 KP793129_p41 hypothetical protein phrog_1295 unknown function unknown function -1 23748 23963
ALM64454.1 KP793129_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 280 804
ALM64471.1 KP793129_p18 distal tail protein phrog_1424 tail protein tail 1 13924 14820
ALM64510.1 KP793129_p57 middle expressed protein 4 phrog_1652 unknown function unknown function 1 30795 30962
ALM64487.1 KP793129_p34 hypothetical protein phrog_3002 unknown function unknown function -1 21000 21185
ALM64467.1 KP793129_p14 major tail protein phrog_1433 major tail protein tail 1 9543 10448
ALM64485.1 KP793129_p32 hypothetical protein phrog_1225 unknown function unknown function -1 20575 20883
ALM64504.1 KP793129_p51 hypothetical protein phrog_2413 unknown function unknown function -1 28840 28968
ALM64477.1 KP793129_p24 hypothetical protein phrog_16598 unknown function unknown function -1 18397 18510
ALM64493.1 KP793129_p40 hypothetical protein phrog_1317 unknown function unknown function -1 23242 23751
ALM64466.1 KP793129_p13 neck passage structure phrog_2370 neck passage structure connector 1 7538 9520
ALM64457.1 KP793129_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2675 2959
ALM64463.1 KP793129_p10 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6394 6810
ALM64484.1 KP793129_p31 hypothetical protein phrog_3365 unknown function unknown function -1 20313 20561
ALM64459.1 KP793129_p6 protease phrog_80 head maturation protease head and packaging 1 4089 4625
ALM64507.1 KP793129_p54 middle expressed protein 1 phrog_5027 unknown function unknown function 1 29956 30183
ALM64468.1 KP793129_p15 strucural protein 5 phrog_1420 virion structural protein head and packaging 1 10487 10762
ALM64509.1 KP793129_p56 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 30316 30798
ALM64505.1 KP793129_p52 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 29323 29739
ALM64470.1 KP793129_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11294 13924
ALM64506.1 KP793129_p53 hypothetical protein phrog_1656 unknown function unknown function -1 29740 29925
ALM64511.1 KP793129_p58 middle expressed protein 5 phrog_6252 unknown function unknown function 1 31689 31817
ALM64476.1 KP793129_p23 lysin phrog_670 endolysin lysis 1 17386 18126
ALM64472.1 KP793129_p19 tail associated lysin phrog_1432 tail associated lysin tail 1 14820 15947
ALM64501.1 KP793129_p48 hypothetical protein phrog_1405 unknown function unknown function -1 26730 26987
ALM64499.1 KP793129_p46 hypothetical protein phrog_1449 unknown function unknown function -1 25779 26162
ALM64461.1 KP793129_p8 strucural protein 1 phrog_1428 head-tail connector protein connector 1 5820 6083
ALM64502.1 KP793129_p49 DNA polymerase phrog_1284 unknown function unknown function -1 27134 28084
ALM64495.1 KP793129_p42 SSB protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 23976 24335
ALM64462.1 KP793129_p9 strucural protein 2 phrog_1429 virion structural protein head and packaging 1 6083 6397
ALM64498.1 KP793129_p45 HNH endonuclease phrog_5462 unknown function unknown function -1 25469 25792
ALM64483.1 KP793129_p30 hypothetical protein phrog_1509 unknown function unknown function -1 19991 20242