| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KR063281 |
Definition |
Gordonia phage GMA2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
103424 |
Host Name |
Gordonia malaquae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
126 |
%GC |
53.37 |
Number of singletons |
78 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AKJ72547.1 | KR063281_p9 | structural protein | phrog_776 | portal protein | head and packaging | 1 | 6225 | 7979 |
| AKJ72584.1 | KR063281_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47109 | 47861 |
| AKJ72618.1 | KR063281_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 78728 | 79051 |
| AKJ72559.1 | KR063281_p21 | methyltransferase | phrog_6608 | methyltransferase | other | 1 | 19657 | 20244 |
| AKJ72587.1 | KR063281_p49 | WhiB family protein | phrog_472 | WhiB transcriptional factor | transcription regulation | -1 | 50611 | 51057 |
| AKJ72600.1 | KR063281_p62 | hypothetical protein | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 64418 | 65413 |
| AKJ72653.1 | KR063281_p115 | hypothetical protein | singleton | unknown function | unknown function | -1 | 97985 | 98689 |
| AKJ72605.1 | KR063281_p67 | hypothetical protein | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | -1 | 70132 | 70752 |
| AKJ72591.1 | KR063281_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53525 | 54511 |
| AKJ72556.1 | KR063281_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17722 | 18366 |
| AKJ72540.1 | KR063281_p1 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 138 | 1817 |
| AKJ72646.1 | KR063281_p108 | hypothetical protein | singleton | unknown function | unknown function | -1 | 94208 | 94429 |
| AKJ72575.1 | KR063281_p37 | lysin | singleton | unknown function | unknown function | 1 | 40766 | 41137 |
| AKJ72598.1 | KR063281_p60 | hypothetical protein | phrog_2300 | unknown function | unknown function | -1 | 62877 | 63482 |
| AKJ72627.1 | KR063281_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 81781 | 81942 |
| AKJ72620.1 | KR063281_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 79524 | 79829 |
| AKJ72643.1 | KR063281_p105 | hypothetical protein | singleton | unknown function | unknown function | -1 | 92784 | 93677 |
| AKJ72610.1 | KR063281_p72 | hypothetical protein | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 73712 | 74554 |
| AKJ72557.1 | KR063281_p19 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 18455 | 19078 |
| AKJ72635.1 | KR063281_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 88763 | 88972 |
| AKJ72629.1 | KR063281_p91 | hypothetical protein | singleton | unknown function | unknown function | -1 | 82725 | 83294 |
| AKJ72656.1 | KR063281_p118 | hypothetical protein | singleton | unknown function | unknown function | -1 | 99358 | 99921 |
| AKJ72645.1 | KR063281_p107 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 93939 | 94211 |
| AKJ72619.1 | KR063281_p81 | hypothetical protein | singleton | unknown function | unknown function | -1 | 79048 | 79308 |
| AKJ72662.1 | KR063281_p124 | hypothetical protein | singleton | unknown function | unknown function | -1 | 102069 | 102752 |
| AKJ72579.1 | KR063281_p41 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 42741 | 43205 |
| AKJ72663.1 | KR063281_p125 | hypothetical protein | singleton | unknown function | unknown function | -1 | 102784 | 103044 |
| AKJ72542.1 | KR063281_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3971 | 4774 |
| AKJ72566.1 | KR063281_p28 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 23414 | 30640 |
| AKJ72599.1 | KR063281_p61 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 63565 | 64314 |
| AKJ72637.1 | KR063281_p99 | hypothetical protein | phrog_12580 | unknown function | unknown function | -1 | 89680 | 90450 |
| AKJ72652.1 | KR063281_p114 | hypothetical protein | singleton | unknown function | unknown function | -1 | 97531 | 97956 |
| AKJ72574.1 | KR063281_p36 | lysin | phrog_12609 | endolysin | lysis | 1 | 40019 | 40747 |
| AKJ72641.1 | KR063281_p103 | hypothetical protein | singleton | unknown function | unknown function | -1 | 92154 | 92477 |
| AKJ72570.1 | KR063281_p32 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 33886 | 36579 |
| AKJ72608.1 | KR063281_p70 | hypothetical protein | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 72861 | 73346 |
| AKJ72567.1 | KR063281_p29 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 30651 | 31595 |
| AKJ72581.1 | KR063281_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43696 | 44082 |
| AKJ72571.1 | KR063281_p33 | hypothetical protein | phrog_32311 | unknown function | unknown function | 1 | 36581 | 38293 |
| AKJ72551.1 | KR063281_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13226 | 14263 |
| AKJ72624.1 | KR063281_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 80749 | 81003 |
| AKJ72607.1 | KR063281_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 71187 | 72845 |
| AKJ72657.1 | KR063281_p119 | hypothetical protein | singleton | unknown function | unknown function | -1 | 99959 | 100168 |
| AKJ72544.1 | KR063281_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5078 | 5734 |
| AKJ72616.1 | KR063281_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 77510 | 78064 |
| AKJ72590.1 | KR063281_p52 | dUTPase | singleton | unknown function | unknown function | -1 | 52827 | 53375 |
| AKJ72609.1 | KR063281_p71 | hypothetical protein | phrog_4125 | unknown function | unknown function | -1 | 73339 | 73629 |
| AKJ72604.1 | KR063281_p66 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 68344 | 70128 |
| AKJ72626.1 | KR063281_p88 | hypothetical protein | phrog_7880 | unknown function | unknown function | -1 | 81347 | 81784 |
| AKJ72558.1 | KR063281_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19143 | 19571 |
| AKJ72658.1 | KR063281_p120 | hypothetical protein | singleton | unknown function | unknown function | -1 | 100181 | 100528 |
| AKJ72563.1 | KR063281_p25 | major tail protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 22256 | 22675 |
| AKJ72650.1 | KR063281_p112 | hypothetical protein | phrog_22100 | unknown function | unknown function | -1 | 95579 | 97174 |
| AKJ72603.1 | KR063281_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67844 | 68347 |
| AKJ72589.1 | KR063281_p51 | methylase | phrog_116 | DNA methyltransferase | other | -1 | 51538 | 52830 |
| AKJ72596.1 | KR063281_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60616 | 60747 |
| AKJ72578.1 | KR063281_p40 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 42184 | 42681 |
| AKJ72623.1 | KR063281_p85 | hypothetical protein | singleton | unknown function | unknown function | -1 | 80348 | 80551 |
| AKJ72642.1 | KR063281_p104 | hypothetical protein | singleton | unknown function | unknown function | -1 | 92474 | 92803 |
| AKJ72560.1 | KR063281_p22 | hypothetical protein | phrog_1721 | galactosyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 20237 | 20953 |
| AKJ72601.1 | KR063281_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65506 | 65715 |
| AKJ72548.1 | KR063281_p10 | structural protein | phrog_2659 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7981 | 10632 |
| AKJ72631.1 | KR063281_p93 | DNA primase | singleton | unknown function | unknown function | -1 | 83562 | 84947 |
| AKJ72541.1 | KR063281_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3580 | 3978 |
| AKJ72664.1 | KR063281_p126 | hypothetical protein | singleton | unknown function | unknown function | -1 | 103105 | 103344 |
| AKJ72553.1 | KR063281_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15052 | 15183 |
| AKJ72614.1 | KR063281_p76 | hypothetical protein | phrog_102 | endolysin | lysis | -1 | 76664 | 77386 |
| AKJ72546.1 | KR063281_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5906 | 6217 |
| AKJ72564.1 | KR063281_p26 | tail assembly protein | singleton | unknown function | unknown function | 1 | 22675 | 23118 |
| AKJ72577.1 | KR063281_p39 | holin | phrog_565 | holin | lysis | 1 | 41812 | 42174 |
| AKJ72612.1 | KR063281_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75371 | 75958 |
| AKJ72648.1 | KR063281_p110 | hypothetical protein | phrog_12293 | unknown function | unknown function | -1 | 94967 | 95407 |
| AKJ72565.1 | KR063281_p27 | tail assembly protein | singleton | unknown function | unknown function | 1 | 23100 | 23402 |
| AKJ72654.1 | KR063281_p116 | hypothetical protein | singleton | unknown function | unknown function | -1 | 98704 | 98919 |
| AKJ72568.1 | KR063281_p30 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 31614 | 33245 |
| AKJ72594.1 | KR063281_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56092 | 57162 |
| AKJ72632.1 | KR063281_p94 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 85005 | 87089 |
| AKJ72655.1 | KR063281_p117 | hypothetical protein | singleton | unknown function | unknown function | -1 | 98912 | 99322 |
| AKJ72638.1 | KR063281_p100 | hypothetical protein | singleton | unknown function | unknown function | -1 | 91125 | 91364 |
| AKJ72634.1 | KR063281_p96 | hypothetical protein | singleton | unknown function | unknown function | -1 | 87394 | 87714 |
| AKJ72644.1 | KR063281_p106 | hypothetical protein | singleton | unknown function | unknown function | -1 | 93680 | 93946 |
| AKJ72602.1 | KR063281_p64 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 65812 | 67776 |
| AKJ72550.1 | KR063281_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12206 | 13207 |
| AKJ72649.1 | KR063281_p111 | hypothetical protein | singleton | unknown function | unknown function | -1 | 95493 | 95606 |
| AKJ72588.1 | KR063281_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51091 | 51465 |
| AKJ72582.1 | KR063281_p44 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 44075 | 44773 |
| AKJ72554.1 | KR063281_p16 | structural protein | phrog_777 | major head protein | head and packaging | 1 | 15295 | 16959 |
| AKJ72597.1 | KR063281_p59 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | -1 | 60935 | 62569 |
| AKJ72613.1 | KR063281_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 76020 | 76604 |
| AKJ72562.1 | KR063281_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21753 | 22253 |
| AKJ72555.1 | KR063281_p17 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 17011 | 17706 |
| AKJ72561.1 | KR063281_p23 | hypothetical protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 21038 | 21652 |
| AKJ72595.1 | KR063281_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57205 | 57738 |
| AKJ72572.1 | KR063281_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38290 | 39237 |
| AKJ72585.1 | KR063281_p47 | hypothetical protein | phrog_1371 | unknown function | unknown function | -1 | 47995 | 48456 |
| AKJ72576.1 | KR063281_p38 | lysin | phrog_16701 | peptidase | other | 1 | 41134 | 41802 |
| AKJ72628.1 | KR063281_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 82002 | 82721 |
| AKJ72647.1 | KR063281_p109 | hypothetical protein | singleton | unknown function | unknown function | -1 | 94426 | 94866 |
| AKJ72552.1 | KR063281_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14328 | 15059 |
| AKJ72621.1 | KR063281_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 79814 | 80008 |
| AKJ72639.1 | KR063281_p101 | hypothetical protein | singleton | unknown function | unknown function | -1 | 91583 | 91927 |
| AKJ72651.1 | KR063281_p113 | hypothetical protein | singleton | unknown function | unknown function | -1 | 97225 | 97428 |
| AKJ72586.1 | KR063281_p48 | ATPase family protein | phrog_16448 | ATPase | other | -1 | 48474 | 50507 |
| AKJ72633.1 | KR063281_p95 | hypothetical protein | singleton | unknown function | unknown function | -1 | 87170 | 87367 |
| AKJ72617.1 | KR063281_p79 | hypothetical protein | phrog_547 | phosphoesterase | other | -1 | 78057 | 78731 |
| AKJ72615.1 | KR063281_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 77394 | 77513 |
| AKJ72573.1 | KR063281_p35 | peptidase | phrog_6007 | endolysin | lysis | 1 | 39327 | 40022 |
| AKJ72569.1 | KR063281_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33254 | 33889 |
| AKJ72611.1 | KR063281_p73 | hypothetical protein | phrog_761 | thymidylate kinase | other | -1 | 74572 | 75363 |
| AKJ72640.1 | KR063281_p102 | hypothetical protein | singleton | unknown function | unknown function | -1 | 91934 | 92176 |
| AKJ72583.1 | KR063281_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44898 | 47093 |
| AKJ72592.1 | KR063281_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54513 | 55700 |
| AKJ72606.1 | KR063281_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70884 | 71072 |
| AKJ72636.1 | KR063281_p98 | hypothetical protein | singleton | unknown function | unknown function | -1 | 89408 | 89671 |
| AKJ72660.1 | KR063281_p122 | hypothetical protein | phrog_2233 | unknown function | unknown function | -1 | 100931 | 101578 |
| AKJ72543.1 | KR063281_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4814 | 5041 |
| AKJ72630.1 | KR063281_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 83392 | 83565 |
| AKJ72622.1 | KR063281_p84 | hypothetical protein | phrog_419 | unknown function | unknown function | -1 | 80010 | 80351 |
| AKJ72625.1 | KR063281_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 81000 | 81263 |
| AKJ72539.1 | KR063281_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1862 | 3583 |
| AKJ72659.1 | KR063281_p121 | hypothetical protein | singleton | unknown function | unknown function | -1 | 100688 | 100930 |
| AKJ72545.1 | KR063281_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5731 | 5916 |
| AKJ72593.1 | KR063281_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55700 | 56095 |
| AKJ72661.1 | KR063281_p123 | hypothetical protein | singleton | unknown function | unknown function | -1 | 101652 | 102011 |
| AKJ72549.1 | KR063281_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10696 | 12123 |
| AKJ72580.1 | KR063281_p42 | hypothetical protein | phrog_19565 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 43216 | 43593 |