Genomic map of Paracoccus phage Shpa (KR072689)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KR072689
Definition
Paracoccus phage Shpa, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vhulanivirus; Paracoccus virus Shpa.
DB of origin
PVOG
Length
38261
Host Name
Paracoccus marinus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
64.67
Number of singletons
26
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AKG94528.1 KR072689_p17 hypothetical protein phrog_2048 tail protein tail 1 11762 12421
AKG94556.1 KR072689_p45 DEAD/DEAH box helicase-like protein phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 30486 32051
AKG94513.1 KR072689_p2 terminase small subunit-like protein singleton unknown function unknown function 1 499 1008
AKG94545.1 KR072689_p34 restriction endonuclease-like phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism -1 24615 25001
AKG94525.1 KR072689_p14 hypothetical protein phrog_19318 unknown function unknown function 1 8749 9024
AKG94559.1 KR072689_p48 hypothetical protein singleton unknown function unknown function 1 33267 33443
AKG94527.1 KR072689_p16 hypothetical protein phrog_1302 distal tail protein tail 1 11135 11758
AKG94521.1 KR072689_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 6947 7588
AKG94549.1 KR072689_p38 single-stranded DNA-binding-like protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 25958 26395
AKG94546.1 KR072689_p35 hypothetical protein phrog_15346 unknown function unknown function -1 24998 25498
AKG94551.1 KR072689_p40 ERF family protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 27024 27755
AKG94512.1 KR072689_p1 hypothetical protein phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 138 707
AKG94541.1 KR072689_p30 hypothetical protein phrog_757 DNA methyltransferase other -1 22041 22721
AKG94562.1 KR072689_p51 hypothetical protein singleton unknown function unknown function 1 35453 35824
AKG94531.1 KR072689_p20 hypothetical protein singleton unknown function unknown function 1 16333 16749
AKG94514.1 KR072689_p3 terminase large subunit-like protein phrog_9 terminase large subunit head and packaging 1 992 2746
AKG94540.1 KR072689_p29 hypothetical protein singleton unknown function unknown function -1 21481 22044
AKG94524.1 KR072689_p13 hypothetical protein phrog_2115 tail protein tail 1 8393 8734
AKG94544.1 KR072689_p33 partitioning protein-like protein singleton unknown function unknown function -1 23697 24515
AKG94539.1 KR072689_p28 hypothetical protein phrog_17576 unknown function unknown function 1 20996 21415
AKG94517.1 KR072689_p6 major capsid-like protein phrog_10 major head protein head and packaging 1 4634 5839
AKG94548.1 KR072689_p37 hypothetical protein phrog_2201 unknown function unknown function -1 25692 25943
AKG94560.1 KR072689_p49 hypothetical protein singleton unknown function unknown function 1 33440 33976
AKG94552.1 KR072689_p41 hypothetical protein singleton unknown function unknown function 1 28681 28953
AKG94518.1 KR072689_p7 hypothetical protein singleton unknown function unknown function 1 5898 6065
AKG94530.1 KR072689_p19 tail-like protein phrog_5616 tail fiber protein tail 1 12822 16040
AKG94547.1 KR072689_p36 hypothetical protein singleton unknown function unknown function -1 25498 25695
AKG94522.1 KR072689_p11 hypothetical protein phrog_347 tail terminator connector 1 7588 7962
AKG94543.1 KR072689_p32 hypothetical protein phrog_874 unknown function unknown function -1 23011 23700
AKG94567.1 KR072689_p56 hypothetical protein singleton unknown function unknown function 1 37545 38117
AKG94520.1 KR072689_p9 head-tail adaptor phrog_25 head closure Hc1 connector 1 6532 6861
AKG94554.1 KR072689_p43 hypothetical protein singleton unknown function unknown function 1 29309 30241
AKG94515.1 KR072689_p4 portal-like protein phrog_12 portal protein head and packaging 1 2748 3962
AKG94553.1 KR072689_p42 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28950 29303
AKG94534.1 KR072689_p23 hypothetical protein singleton unknown function unknown function 1 18702 19097
AKG94565.1 KR072689_p54 hypothetical protein singleton unknown function unknown function 1 36479 36679
AKG94555.1 KR072689_p44 hypothetical protein singleton unknown function unknown function 1 30238 30492
AKG94542.1 KR072689_p31 hypothetical protein singleton unknown function unknown function -1 22709 23014
AKG94533.1 KR072689_p22 hypothetical protein singleton unknown function unknown function 1 17878 18702
AKG94516.1 KR072689_p5 prohead protease phrog_80 head maturation protease head and packaging 1 3949 4602
AKG94566.1 KR072689_p55 hypothetical protein singleton unknown function unknown function 1 36703 37506
AKG94563.1 KR072689_p52 hypothetical protein singleton unknown function unknown function 1 35821 36234
AKG94535.1 KR072689_p24 hypothetical protein singleton unknown function unknown function 1 19491 19784
AKG94550.1 KR072689_p39 endonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 26392 27018
AKG94537.1 KR072689_p26 hypothetical protein singleton unknown function unknown function 1 20203 20412
AKG94557.1 KR072689_p46 primase-like protein phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 32048 32965
AKG94538.1 KR072689_p27 lysozyme-like protein phrog_822 amidase lysis 1 20473 20994
AKG94523.1 KR072689_p12 outer capsid-like protein phrog_158 major tail protein tail 1 7959 8393
AKG94529.1 KR072689_p18 hypothetical protein phrog_2134 unknown function unknown function 1 12418 12822
AKG94561.1 KR072689_p50 hypothetical protein singleton unknown function unknown function 1 34393 35448
AKG94519.1 KR072689_p8 DNA packaging-like protein phrog_442 head-tail adaptor connector 1 6062 6535
AKG94526.1 KR072689_p15 tail tape measure-like protein phrog_8462 tail length tape measure protein tail 1 9021 11135
AKG94558.1 KR072689_p47 hypothetical protein singleton unknown function unknown function 1 33048 33227
AKG94536.1 KR072689_p25 hypothetical protein singleton unknown function unknown function 1 19787 20206
AKG94532.1 KR072689_p21 hypothetical protein singleton unknown function unknown function 1 16746 17294
AKG94564.1 KR072689_p53 hypothetical protein singleton unknown function unknown function 1 36231 36482