| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KR072689 |
Definition |
Paracoccus phage Shpa, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vhulanivirus; Paracoccus virus Shpa. |
DB of origin |
PVOG |
Length |
38261 |
Host Name |
Paracoccus marinus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
64.67 |
Number of singletons |
26 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AKG94528.1 | KR072689_p17 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 11762 | 12421 |
| AKG94556.1 | KR072689_p45 | DEAD/DEAH box helicase-like protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 30486 | 32051 |
| AKG94513.1 | KR072689_p2 | terminase small subunit-like protein | singleton | unknown function | unknown function | 1 | 499 | 1008 |
| AKG94545.1 | KR072689_p34 | restriction endonuclease-like | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24615 | 25001 |
| AKG94525.1 | KR072689_p14 | hypothetical protein | phrog_19318 | unknown function | unknown function | 1 | 8749 | 9024 |
| AKG94559.1 | KR072689_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33267 | 33443 |
| AKG94527.1 | KR072689_p16 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 11135 | 11758 |
| AKG94521.1 | KR072689_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6947 | 7588 |
| AKG94549.1 | KR072689_p38 | single-stranded DNA-binding-like protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25958 | 26395 |
| AKG94546.1 | KR072689_p35 | hypothetical protein | phrog_15346 | unknown function | unknown function | -1 | 24998 | 25498 |
| AKG94551.1 | KR072689_p40 | ERF family protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 27024 | 27755 |
| AKG94512.1 | KR072689_p1 | hypothetical protein | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 138 | 707 |
| AKG94541.1 | KR072689_p30 | hypothetical protein | phrog_757 | DNA methyltransferase | other | -1 | 22041 | 22721 |
| AKG94562.1 | KR072689_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35453 | 35824 |
| AKG94531.1 | KR072689_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16333 | 16749 |
| AKG94514.1 | KR072689_p3 | terminase large subunit-like protein | phrog_9 | terminase large subunit | head and packaging | 1 | 992 | 2746 |
| AKG94540.1 | KR072689_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21481 | 22044 |
| AKG94524.1 | KR072689_p13 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 8393 | 8734 |
| AKG94544.1 | KR072689_p33 | partitioning protein-like protein | singleton | unknown function | unknown function | -1 | 23697 | 24515 |
| AKG94539.1 | KR072689_p28 | hypothetical protein | phrog_17576 | unknown function | unknown function | 1 | 20996 | 21415 |
| AKG94517.1 | KR072689_p6 | major capsid-like protein | phrog_10 | major head protein | head and packaging | 1 | 4634 | 5839 |
| AKG94548.1 | KR072689_p37 | hypothetical protein | phrog_2201 | unknown function | unknown function | -1 | 25692 | 25943 |
| AKG94560.1 | KR072689_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33440 | 33976 |
| AKG94552.1 | KR072689_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28681 | 28953 |
| AKG94518.1 | KR072689_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5898 | 6065 |
| AKG94530.1 | KR072689_p19 | tail-like protein | phrog_5616 | tail fiber protein | tail | 1 | 12822 | 16040 |
| AKG94547.1 | KR072689_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25498 | 25695 |
| AKG94522.1 | KR072689_p11 | hypothetical protein | phrog_347 | tail terminator | connector | 1 | 7588 | 7962 |
| AKG94543.1 | KR072689_p32 | hypothetical protein | phrog_874 | unknown function | unknown function | -1 | 23011 | 23700 |
| AKG94567.1 | KR072689_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37545 | 38117 |
| AKG94520.1 | KR072689_p9 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6532 | 6861 |
| AKG94554.1 | KR072689_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29309 | 30241 |
| AKG94515.1 | KR072689_p4 | portal-like protein | phrog_12 | portal protein | head and packaging | 1 | 2748 | 3962 |
| AKG94553.1 | KR072689_p42 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28950 | 29303 |
| AKG94534.1 | KR072689_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18702 | 19097 |
| AKG94565.1 | KR072689_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36479 | 36679 |
| AKG94555.1 | KR072689_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30238 | 30492 |
| AKG94542.1 | KR072689_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22709 | 23014 |
| AKG94533.1 | KR072689_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17878 | 18702 |
| AKG94516.1 | KR072689_p5 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 3949 | 4602 |
| AKG94566.1 | KR072689_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36703 | 37506 |
| AKG94563.1 | KR072689_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35821 | 36234 |
| AKG94535.1 | KR072689_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19491 | 19784 |
| AKG94550.1 | KR072689_p39 | endonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 26392 | 27018 |
| AKG94537.1 | KR072689_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20203 | 20412 |
| AKG94557.1 | KR072689_p46 | primase-like protein | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 32048 | 32965 |
| AKG94538.1 | KR072689_p27 | lysozyme-like protein | phrog_822 | amidase | lysis | 1 | 20473 | 20994 |
| AKG94523.1 | KR072689_p12 | outer capsid-like protein | phrog_158 | major tail protein | tail | 1 | 7959 | 8393 |
| AKG94529.1 | KR072689_p18 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 12418 | 12822 |
| AKG94561.1 | KR072689_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34393 | 35448 |
| AKG94519.1 | KR072689_p8 | DNA packaging-like protein | phrog_442 | head-tail adaptor | connector | 1 | 6062 | 6535 |
| AKG94526.1 | KR072689_p15 | tail tape measure-like protein | phrog_8462 | tail length tape measure protein | tail | 1 | 9021 | 11135 |
| AKG94558.1 | KR072689_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33048 | 33227 |
| AKG94536.1 | KR072689_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19787 | 20206 |
| AKG94532.1 | KR072689_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16746 | 17294 |
| AKG94564.1 | KR072689_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36231 | 36482 |