| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KR091952 |
Definition |
Pseudomonas phage phiPsa17, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus; Pseudomonas virus PhiPsa17. |
DB of origin |
PVOG |
Length |
40525 |
Host Name |
Pseudomonas syringae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
57.29 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AKG94360.1 | KR091952_p18 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 10393 | 10758 |
| AKG94370.1 | KR091952_p28 | HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 18024 | 18233 |
| AKG94352.1 | KR091952_p10 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4598 | 7255 |
| AKG94374.1 | KR091952_p32 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 19757 | 20200 |
| AKG94362.1 | KR091952_p20 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11513 | 11956 |
| AKG94346.1 | KR091952_p4 | hypothetical protein | phrog_3199 | unknown function | unknown function | 1 | 1715 | 1990 |
| AKG94356.1 | KR091952_p14 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 8073 | 9137 |
| AKG94381.1 | KR091952_p39 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 27353 | 27787 |
| AKG94389.1 | KR091952_p47 | endopeptidase Rz | phrog_1327 | Rz-like spanin | lysis | 1 | 37542 | 37991 |
| AKG94369.1 | KR091952_p27 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 17651 | 18031 |
| AKG94358.1 | KR091952_p16 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 9585 | 10232 |
| AKG94384.1 | KR091952_p42 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30607 | 34785 |
| AKG94371.1 | KR091952_p29 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18230 | 19174 |
| AKG94368.1 | KR091952_p26 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 15491 | 17638 |
| AKG94353.1 | KR091952_p11 | hypothetical protein | phrog_13030 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 7269 | 7406 |
| AKG94344.1 | KR091952_p2 | hypothetical protein | phrog_16407 | unknown function | unknown function | 1 | 1259 | 1513 |
| AKG94377.1 | KR091952_p35 | capsid and scaffold protein | phrog_1052 | head assembly | head and packaging | 1 | 22189 | 23064 |
| AKG94373.1 | KR091952_p31 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 19488 | 19760 |
| AKG94379.1 | KR091952_p37 | tail fiber protein | phrog_446 | tail protein | tail | 1 | 24271 | 24858 |
| AKG94372.1 | KR091952_p30 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 19243 | 19485 |
| AKG94378.1 | KR091952_p36 | capsid and scaffold protein | phrog_267 | major head protein | head and packaging | 1 | 23164 | 24207 |
| AKG94348.1 | KR091952_p6 | hypothetical protein | phrog_8679 | unknown function | unknown function | 1 | 2588 | 3124 |
| AKG94388.1 | KR091952_p46 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 37285 | 37542 |
| AKG94380.1 | KR091952_p38 | tail fiber protein | phrog_457 | tail protein | tail | 1 | 24868 | 27294 |
| AKG94361.1 | KR091952_p19 | ssDNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10812 | 11513 |
| AKG94345.1 | KR091952_p3 | hypothetical protein | phrog_7884 | unknown function | unknown function | 1 | 1513 | 1710 |
| AKG94363.1 | KR091952_p21 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 11959 | 12399 |
| AKG94376.1 | KR091952_p34 | collar/head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 20489 | 22120 |
| AKG94387.1 | KR091952_p45 | class II holin | phrog_920 | holin | lysis | 1 | 37073 | 37288 |
| AKG94375.1 | KR091952_p33 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20172 | 20474 |
| AKG94364.1 | KR091952_p22 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 12469 | 13008 |
| AKG94351.1 | KR091952_p9 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 4030 | 4470 |
| AKG94386.1 | KR091952_p44 | hypothetical protein | phrog_1795 | tail fiber protein | tail | 1 | 36717 | 37073 |
| AKG94347.1 | KR091952_p5 | hypothetical protein | phrog_7806 | unknown function | unknown function | 1 | 2078 | 2557 |
| AKG94366.1 | KR091952_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14705 | 14902 |
| AKG94355.1 | KR091952_p13 | hypothetical protein | phrog_12775 | unknown function | unknown function | 1 | 7675 | 8061 |
| AKG94391.1 | KR091952_p49 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 39919 | 40092 |
| AKG94385.1 | KR091952_p43 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 34848 | 36677 |
| AKG94365.1 | KR091952_p23 | primase/helicase protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 12995 | 14686 |
| AKG94359.1 | KR091952_p17 | host RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 10229 | 10396 |
| AKG94343.1 | KR091952_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 993 | 1262 |
| AKG94350.1 | KR091952_p8 | hypothetical protein | phrog_19243 | unknown function | unknown function | 1 | 3825 | 4028 |
| AKG94357.1 | KR091952_p15 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 9331 | 9588 |
| AKG94349.1 | KR091952_p7 | hypothetical protein | phrog_61 | 2OG-Fe(II) oxygenase | moron, auxiliary metabolic gene and host takeover | 1 | 3121 | 3825 |
| AKG94367.1 | KR091952_p25 | hypothetical protein | phrog_9312 | unknown function | unknown function | 1 | 14971 | 15480 |
| AKG94382.1 | KR091952_p40 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 27798 | 28385 |
| AKG94383.1 | KR091952_p41 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 28378 | 30594 |
| AKG94354.1 | KR091952_p12 | hypothetical protein | phrog_11287 | unknown function | unknown function | 1 | 7403 | 7675 |
| AKG94390.1 | KR091952_p48 | DNA packaging protein | phrog_38 | terminase large subunit | head and packaging | 1 | 37991 | 39739 |