Genomic map of Pseudomonas phage phiPsa17 (KR091952)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KR091952
Definition
Pseudomonas phage phiPsa17, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus; Pseudomonas virus PhiPsa17.
DB of origin
PVOG
Length
40525
Host Name
Pseudomonas syringae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
57.29
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AKG94360.1 KR091952_p18 hypothetical protein phrog_5138 unknown function unknown function 1 10393 10758
AKG94370.1 KR091952_p28 HNS binding protein phrog_1334 unknown function unknown function 1 18024 18233
AKG94352.1 KR091952_p10 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 4598 7255
AKG94374.1 KR091952_p32 hypothetical protein phrog_3986 unknown function unknown function 1 19757 20200
AKG94362.1 KR091952_p20 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 11513 11956
AKG94346.1 KR091952_p4 hypothetical protein phrog_3199 unknown function unknown function 1 1715 1990
AKG94356.1 KR091952_p14 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 8073 9137
AKG94381.1 KR091952_p39 internal virion protein A phrog_308 internal virion protein head and packaging 1 27353 27787
AKG94389.1 KR091952_p47 endopeptidase Rz phrog_1327 Rz-like spanin lysis 1 37542 37991
AKG94369.1 KR091952_p27 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 17651 18031
AKG94358.1 KR091952_p16 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 9585 10232
AKG94384.1 KR091952_p42 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 30607 34785
AKG94371.1 KR091952_p29 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 18230 19174
AKG94368.1 KR091952_p26 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 15491 17638
AKG94353.1 KR091952_p11 hypothetical protein phrog_13030 RNA polymerase DNA, RNA and nucleotide metabolism 1 7269 7406
AKG94344.1 KR091952_p2 hypothetical protein phrog_16407 unknown function unknown function 1 1259 1513
AKG94377.1 KR091952_p35 capsid and scaffold protein phrog_1052 head assembly head and packaging 1 22189 23064
AKG94373.1 KR091952_p31 hypothetical protein phrog_1391 unknown function unknown function 1 19488 19760
AKG94379.1 KR091952_p37 tail fiber protein phrog_446 tail protein tail 1 24271 24858
AKG94372.1 KR091952_p30 hypothetical protein phrog_1447 unknown function unknown function 1 19243 19485
AKG94378.1 KR091952_p36 capsid and scaffold protein phrog_267 major head protein head and packaging 1 23164 24207
AKG94348.1 KR091952_p6 hypothetical protein phrog_8679 unknown function unknown function 1 2588 3124
AKG94388.1 KR091952_p46 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 37285 37542
AKG94380.1 KR091952_p38 tail fiber protein phrog_457 tail protein tail 1 24868 27294
AKG94361.1 KR091952_p19 ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 10812 11513
AKG94345.1 KR091952_p3 hypothetical protein phrog_7884 unknown function unknown function 1 1513 1710
AKG94363.1 KR091952_p21 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 11959 12399
AKG94376.1 KR091952_p34 collar/head-to-tail joining protein phrog_449 head-tail adaptor connector 1 20489 22120
AKG94387.1 KR091952_p45 class II holin phrog_920 holin lysis 1 37073 37288
AKG94375.1 KR091952_p33 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 20172 20474
AKG94364.1 KR091952_p22 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 12469 13008
AKG94351.1 KR091952_p9 hypothetical protein phrog_9238 unknown function unknown function 1 4030 4470
AKG94386.1 KR091952_p44 hypothetical protein phrog_1795 tail fiber protein tail 1 36717 37073
AKG94347.1 KR091952_p5 hypothetical protein phrog_7806 unknown function unknown function 1 2078 2557
AKG94366.1 KR091952_p24 hypothetical protein singleton unknown function unknown function 1 14705 14902
AKG94355.1 KR091952_p13 hypothetical protein phrog_12775 unknown function unknown function 1 7675 8061
AKG94391.1 KR091952_p49 hypothetical protein phrog_2193 unknown function unknown function 1 39919 40092
AKG94385.1 KR091952_p43 tail fiber protein phrog_4242 tail fiber protein tail 1 34848 36677
AKG94365.1 KR091952_p23 primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 12995 14686
AKG94359.1 KR091952_p17 host RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 10229 10396
AKG94343.1 KR091952_p1 hypothetical protein singleton unknown function unknown function 1 993 1262
AKG94350.1 KR091952_p8 hypothetical protein phrog_19243 unknown function unknown function 1 3825 4028
AKG94357.1 KR091952_p15 hypothetical protein phrog_1777 unknown function unknown function 1 9331 9588
AKG94349.1 KR091952_p7 hypothetical protein phrog_61 2OG-Fe(II) oxygenase moron, auxiliary metabolic gene and host takeover 1 3121 3825
AKG94367.1 KR091952_p25 hypothetical protein phrog_9312 unknown function unknown function 1 14971 15480
AKG94382.1 KR091952_p40 internal virion protein B phrog_805 internal virion protein head and packaging 1 27798 28385
AKG94383.1 KR091952_p41 internal virion protein C phrog_1339 internal virion protein head and packaging 1 28378 30594
AKG94354.1 KR091952_p12 hypothetical protein phrog_11287 unknown function unknown function 1 7403 7675
AKG94390.1 KR091952_p48 DNA packaging protein phrog_38 terminase large subunit head and packaging 1 37991 39739