Genomic map of Escherichia phage APCEc03 (KR422353)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KR422353
Definition
Escherichia phage APCEc03, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Tequintavirus; Escherichia virus phiAPCEc03.
DB of origin
PVOG
Length
103737
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
151
%GC
38.93
Number of singletons
0
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AKO61449.1 KR422353_p48 hypothetical protein phrog_6021 unknown function unknown function 1 19847 20080
AKO61451.1 KR422353_p50 hypothetical protein phrog_5271 unknown function unknown function 1 20265 20825
AKO61428.1 KR422353_p27 hypothetical protein phrog_32393 unknown function unknown function 1 11692 11820
AKO61454.1 KR422353_p53 hypothetical protein phrog_4379 unknown function unknown function -1 23663 24007
AKO61486.1 KR422353_p85 hypothetical protein phrog_313 Tail assembly chaperone tail 1 45608 46012
AKO61533.1 KR422353_p132 hypothetical protein phrog_5357 tail length tape measure protein tail 1 90055 90276
AKO61511.1 KR422353_p110 NAD-dependent DNA ligase subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 75185 75955
AKO61456.1 KR422353_p55 hypothetical protein phrog_5607 unknown function unknown function -1 24346 24495
AKO61426.1 KR422353_p25 holin phrog_860 holin lysis 1 10567 11223
AKO61541.1 KR422353_p140 hypothetical protein phrog_4593 unknown function unknown function 1 96818 97096
AKO61431.1 KR422353_p30 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 12627 12917
AKO61515.1 KR422353_p114 hypothetical protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 77909 78319
AKO61443.1 KR422353_p42 hypothetical protein phrog_5967 unknown function unknown function 1 17891 18091
AKO61472.1 KR422353_p71 receptor blocking protein phrog_8596 unknown function unknown function -1 32957 33085
AKO61417.1 KR422353_p16 hypothetical protein phrog_4821 unknown function unknown function 1 6146 6442
AKO61452.1 KR422353_p51 hypothetical protein phrog_8583 unknown function unknown function 1 20961 21845
AKO61408.1 KR422353_p7 hypothetical protein phrog_5919 unknown function unknown function 1 3028 3192
AKO61455.1 KR422353_p54 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover -1 24131 24343
AKO61510.1 KR422353_p109 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation -1 74425 75192
AKO61490.1 KR422353_p89 tail protein phrog_31 central tail fiber J tail 1 50927 53776
AKO61402.1 KR422353_p1 hypothetical protein phrog_849 DNA primase DNA, RNA and nucleotide metabolism 1 75 593
AKO61414.1 KR422353_p13 hypothetical protein phrog_4499 unknown function unknown function 1 5012 5326
AKO61524.1 KR422353_p123 hypothetical protein phrog_11166 unknown function unknown function -1 84909 85094
AKO61529.1 KR422353_p128 hypothetical protein phrog_5236 unknown function unknown function -1 86416 86619
AKO61534.1 KR422353_p133 aerobic ribonucleoside diphosphate reductase large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 90314 92749
AKO61525.1 KR422353_p124 hypothetical protein phrog_5116 unknown function unknown function -1 85091 85261
AKO61468.1 KR422353_p67 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 31964 32461
AKO61476.1 KR422353_p75 hypothetical protein phrog_3497 unknown function unknown function 1 37295 37732
AKO61551.1 KR422353_p150 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism 1 101381 101824
AKO61527.1 KR422353_p126 Sir2-like protein phrog_2162 Sir2 (NAD-dependent deacetylase) DNA, RNA and nucleotide metabolism -1 85415 86233
AKO61460.1 KR422353_p59 hypothetical protein phrog_4718 unknown function unknown function 1 26988 27191
AKO61442.1 KR422353_p41 hypothetical protein phrog_4731 unknown function unknown function 1 17465 17791
AKO61483.1 KR422353_p82 hypothetical protein phrog_3907 tail terminator connector 1 42801 43286
AKO61519.1 KR422353_p118 H-N-H-endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 79672 80184
AKO61484.1 KR422353_p83 major tail protein phrog_3575 major tail protein tail 1 43313 44707
AKO61477.1 KR422353_p76 portal protein phrog_12 portal protein head and packaging 1 37732 38949
AKO61494.1 KR422353_p93 hypothetical protein phrog_1361 unknown function unknown function 1 58710 58973
AKO61462.1 KR422353_p61 DNA-binding protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 27771 28178
AKO61500.1 KR422353_p99 exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 62880 64676
AKO61481.1 KR422353_p80 hypothetical protein phrog_442 head-tail adaptor connector 1 41518 42030
AKO61459.1 KR422353_p58 hypothetical protein phrog_4263 unknown function unknown function -1 25120 25866
AKO61464.1 KR422353_p63 DNA transfer protein phrog_1745 DNA transfer protein other 1 28558 30228
AKO61471.1 KR422353_p70 hypothetical protein phrog_6369 unknown function unknown function -1 32850 32957
AKO61544.1 KR422353_p143 hypothetical protein phrog_4586 unknown function unknown function 1 98016 98252
AKO61548.1 KR422353_p147 hypothetical protein phrog_1479 unknown function unknown function 1 100370 100687
AKO61520.1 KR422353_p119 helicase phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism -1 80177 82963
AKO61545.1 KR422353_p144 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism 1 98281 98982
AKO61493.1 KR422353_p92 tail fiber protein phrog_1419 tail protein tail 1 56262 58709
AKO61423.1 KR422353_p22 hypothetical protein phrog_812 Rz-like spanin lysis 1 8798 9046
AKO61504.1 KR422353_p103 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 66984 68336
AKO61410.1 KR422353_p9 hypothetical protein phrog_4760 unknown function unknown function 1 3538 3831
AKO61432.1 KR422353_p31 hypothetical protein phrog_6798 unknown function unknown function 1 13099 13476
AKO61420.1 KR422353_p19 hypothetical protein phrog_5468 unknown function unknown function 1 7089 7487
AKO61523.1 KR422353_p122 hypothetical protein phrog_1818 unknown function unknown function -1 84416 84931
AKO61487.1 KR422353_p86 hypothetical protein phrog_3914 tail assembly chaperone tail 1 46074 46442
AKO61470.1 KR422353_p69 hypothetical protein phrog_5851 unknown function unknown function -1 32659 32853
AKO61530.1 KR422353_p129 hypothetical protein phrog_11748 unknown function unknown function -1 86616 86975
AKO61522.1 KR422353_p121 hypothetical protein phrog_2502 unknown function unknown function -1 83985 84413
AKO61495.1 KR422353_p94 tail fiber protein phrog_6921 tail fiber protein tail 1 58984 60726
AKO61474.1 KR422353_p73 hypothetical protein phrog_3802 terminase small subunit head and packaging 1 35382 35864
AKO61482.1 KR422353_p81 hypothetical protein phrog_3725 tail completion or Neck1 protein connector 1 42030 42797
AKO61536.1 KR422353_p135 aerobic ribonucleoside-diphosphate reductase small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 93375 94520
AKO61537.1 KR422353_p136 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism 1 94517 95050
AKO61453.1 KR422353_p52 hypothetical protein phrog_6973 unknown function unknown function -1 23443 23637
AKO61465.1 KR422353_p64 hypothetical protein phrog_8297 unknown function unknown function 1 30285 30542
AKO61499.1 KR422353_p98 D14 protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 62394 62876
AKO61404.1 KR422353_p3 hypothetical protein phrog_6060 anti-termination protein Q-like transcription regulation 1 1006 1191
AKO61430.1 KR422353_p29 hypothetical protein phrog_4328 unknown function unknown function 1 12203 12634
AKO61424.1 KR422353_p23 deoxynucleoside-5-monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other 1 9046 9798
AKO61488.1 KR422353_p87 pore forming tail tip protein phrog_3779 tail length tape measure protein tail 1 46526 50206
AKO61425.1 KR422353_p24 ATP-dependent Clp protease phrog_1827 ATP-dependent protease other 1 9811 10392
AKO61445.1 KR422353_p44 hypothetical protein phrog_4905 unknown function unknown function 1 18497 18868
AKO61441.1 KR422353_p40 hypothetical protein phrog_4804 unknown function unknown function 1 17230 17475
AKO61448.1 KR422353_p47 hypothetical protein phrog_9887 unknown function unknown function 1 19569 19859
AKO61405.1 KR422353_p4 hypothetical protein phrog_14410 unknown function unknown function 1 1688 1891
AKO61436.1 KR422353_p35 serine/threonine protein phosphatase phrog_547 phosphoesterase other 1 14879 15469
AKO61489.1 KR422353_p88 hypothetical protein phrog_1302 distal tail protein tail 1 50316 50930
AKO61467.1 KR422353_p66 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other 1 31054 31788
AKO61512.1 KR422353_p111 NAD-dependent DNA ligase, subunit A phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 76158 77129
AKO61547.1 KR422353_p146 hypothetical protein phrog_1491 tail fiber protein tail 1 99289 99927
AKO61514.1 KR422353_p113 hypothetical protein phrog_3696 unknown function unknown function -1 77576 77872
AKO61421.1 KR422353_p20 hypothetical protein phrog_4243 unknown function unknown function 1 7642 8322
AKO61498.1 KR422353_p97 flap endonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 61519 62394
AKO61550.1 KR422353_p149 hypothetical protein phrog_5077 unknown function unknown function 1 101211 101381
AKO61505.1 KR422353_p104 hypothetical protein phrog_4386 unknown function unknown function -1 68333 68830
AKO61475.1 KR422353_p74 terminase large subunit phrog_2 terminase large subunit head and packaging 1 35864 37180
AKO61531.1 KR422353_p130 anaerobic ribonucleoside-triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 87074 88948
AKO61433.1 KR422353_p32 hypothetical protein phrog_7354 major head protein head and packaging 1 13481 13726
AKO61552.1 KR422353_p151 hypothetical protein phrog_200 lipoprotein other 1 102768 103715
AKO61412.1 KR422353_p11 hypothetical protein phrog_3909 unknown function unknown function 1 4325 4519
AKO61532.1 KR422353_p131 phosphate starvation-inducible protein phrog_170 PhoH-like phosphate starvation-inducible other 1 89301 90053
AKO61439.1 KR422353_p38 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16419 16955
AKO61422.1 KR422353_p21 hypothetical protein phrog_739 Rz-like spanin lysis 1 8319 8762
AKO61444.1 KR422353_p43 hypothetical protein phrog_4215 unknown function unknown function 1 18088 18549
AKO61406.1 KR422353_p5 hypothetical protein phrog_2210 unknown function unknown function 1 2362 2535
AKO61466.1 KR422353_p65 hypothetical protein phrog_4576 unknown function unknown function 1 30581 30973
AKO61473.1 KR422353_p72 receptor-binding tail protein phrog_4815 receptor binding tail protein tail 1 33614 35371
AKO61513.1 KR422353_p112 hypothetical protein phrog_4053 transcriptional regulator transcription regulation -1 77217 77525
AKO61427.1 KR422353_p26 lysozyme phrog_465 endolysin lysis 1 11220 11633
AKO61461.1 KR422353_p60 hypothetical protein phrog_3747 unknown function unknown function 1 27421 27672
AKO61434.1 KR422353_p33 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other 1 13729 14592
AKO61458.1 KR422353_p57 hypothetical protein phrog_23458 unknown function unknown function -1 24890 25003
AKO61503.1 KR422353_p102 hypothetical protein phrog_4258 unknown function unknown function -1 66479 66763
AKO61538.1 KR422353_p137 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 95050 95889
AKO61416.1 KR422353_p15 hypothetical protein phrog_2855 unknown function unknown function 1 5872 6153
AKO61508.1 KR422353_p107 H-N-H-endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 72340 72873
AKO61469.1 KR422353_p68 hypothetical protein phrog_6447 membrane protein moron, auxiliary metabolic gene and host takeover -1 32448 32666
AKO61429.1 KR422353_p28 hypothetical protein phrog_5944 unknown function unknown function 1 11711 12127
AKO61542.1 KR422353_p141 hypothetical protein phrog_4516 unknown function unknown function 1 97180 97695
AKO61450.1 KR422353_p49 hypothetical protein phrog_5799 unknown function unknown function 1 20080 20265
AKO61492.1 KR422353_p91 tail protein phrog_1084 unknown function unknown function 1 55840 56262
AKO61496.1 KR422353_p95 hypothetical protein phrog_5592 unknown function unknown function -1 60850 61098
AKO61540.1 KR422353_p139 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism 1 96264 96740
AKO61440.1 KR422353_p39 membrane protein phrog_4984 unknown function unknown function 1 16952 17233
AKO61509.1 KR422353_p108 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 72870 74336
AKO61438.1 KR422353_p37 hypothetical protein phrog_3880 unknown function unknown function 1 16147 16422
AKO61546.1 KR422353_p145 hypothetical protein phrog_5252 unknown function unknown function 1 99053 99235
AKO61411.1 KR422353_p10 hypothetical protein phrog_9814 unknown function unknown function 1 3831 4037
AKO61526.1 KR422353_p125 hypothetical protein phrog_5116 unknown function unknown function -1 85252 85437
AKO61528.1 KR422353_p127 hypothetical protein phrog_5827 unknown function unknown function -1 86226 86447
AKO61517.1 KR422353_p116 D2 protein phrog_3611 helicase DNA, RNA and nucleotide metabolism -1 78682 79386
AKO61403.1 KR422353_p2 hypothetical protein phrog_10617 unknown function unknown function 1 808 996
AKO61485.1 KR422353_p84 minor tail protein phrog_3889 base plate tail tube protein tail 1 44712 45611
AKO61419.1 KR422353_p18 hypothetical protein phrog_5265 unknown function unknown function 1 6749 7033
AKO61463.1 KR422353_p62 hypothetical protein phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover 1 28270 28467
AKO61418.1 KR422353_p17 hypothetical protein phrog_5792 unknown function unknown function 1 6444 6752
AKO61543.1 KR422353_p142 hypothetical protein phrog_2380 unknown function unknown function 1 97759 97974
AKO61446.1 KR422353_p45 hypothetical protein phrog_6933 unknown function unknown function 1 18925 19128
AKO61502.1 KR422353_p101 D11 protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 65713 66486
AKO61518.1 KR422353_p117 hypothetical protein phrog_5291 unknown function unknown function -1 79455 79688
AKO61479.1 KR422353_p78 prohead protease phrog_80 head maturation protease head and packaging 1 39435 40067
AKO61549.1 KR422353_p148 spore cortex-lytic enzyme precursor phrog_938 endolysin lysis 1 100693 101142
AKO61407.1 KR422353_p6 hypothetical protein phrog_5598 unknown function unknown function 1 2784 3035
AKO61413.1 KR422353_p12 acetyltransferase-like protein phrog_1209 unknown function unknown function 1 4562 4930
AKO61506.1 KR422353_p105 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 68823 71390
AKO61480.1 KR422353_p79 major head protein precursor phrog_10 major head protein head and packaging 1 40085 41458
AKO61437.1 KR422353_p36 hypothetical protein phrog_4979 unknown function unknown function 1 15637 16068
AKO61535.1 KR422353_p134 H-N-H-endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 92851 93366
AKO61435.1 KR422353_p34 hypothetical protein phrog_14979 unknown function unknown function 1 14592 14879
AKO61501.1 KR422353_p100 exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 64699 65592
AKO61521.1 KR422353_p120 hypothetical protein phrog_2502 unknown function unknown function -1 83583 83975
AKO61497.1 KR422353_p96 deoxyUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 61076 61522
AKO61415.1 KR422353_p14 hypothetical protein phrog_5021 unknown function unknown function 1 5448 5795
AKO61457.1 KR422353_p56 hypothetical protein phrog_5145 unknown function unknown function -1 24542 24772
AKO61516.1 KR422353_p115 hypothetical protein phrog_643 transcriptional regulator transcription regulation -1 78426 78689
AKO61507.1 KR422353_p106 DNA replication primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 71453 72343
AKO61478.1 KR422353_p77 tail protein phrog_2973 Hoc-like head decoration head and packaging 1 38946 39431
AKO61491.1 KR422353_p90 tail protein phrog_3890 straight fibre tail protein tail 1 53776 55833
AKO61409.1 KR422353_p8 hypothetical protein phrog_15108 unknown function unknown function 1 3302 3469
AKO61447.1 KR422353_p46 hypothetical protein phrog_4605 unknown function unknown function 1 19088 19576
AKO61539.1 KR422353_p138 hypothetical protein phrog_5321 unknown function unknown function 1 95983 96264