Genomic map of Stenotrophomonas phage vB_SmaS-DLP_1 (KR537872)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KR537872
Definition
Stenotrophomonas phage vB_SmaS-DLP_1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus.
DB of origin
PVOG
Length
42887
Host Name
Stenotrophomonas maltophilia
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
53.71
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AKI28823.1 KR537872_p29 hypothetical protein phrog_11184 unknown function unknown function -1 26805 27161
AKI28804.1 KR537872_p10 scaffold protein phrog_206 head scaffolding protein head and packaging 1 6353 7072
AKI28795.1 KR537872_p8 portal protein phrog_145 portal protein head and packaging 1 3705 5210
AKI28812.1 KR537872_p6 small terminase subunit phrog_5334 terminase small subunit head and packaging 1 1627 2115
AKI28809.1 KR537872_p32 hypothetical protein phrog_1934 unknown function unknown function -1 29817 30344
AKI28788.1 KR537872_p26 central tail hub phrog_1101 tail protein tail 1 21174 23615
AKI28793.1 KR537872_p7 large terminase subunit phrog_2 terminase large subunit head and packaging 1 2096 3691
AKI28814.1 KR537872_p16 minor tail protein phrog_179 tail terminator connector 1 9904 10359
AKI28834.1 KR537872_p45 hypothetical protein phrog_22104 unknown function unknown function 1 38003 38224
AKI28833.1 KR537872_p53 hypothetical protein phrog_9844 unknown function unknown function 1 40454 40687
AKI28815.1 KR537872_p35 hypothetical protein phrog_2480 unknown function unknown function -1 31999 32439
AKI28811.1 KR537872_p48 Vsr endonuclease phrog_824 unknown function unknown function 1 38924 39415
AKI28787.1 KR537872_p21 tape measure protein phrog_3336 tail length tape measure protein tail 1 13173 16700
AKI28831.1 KR537872_p1 hypothetical protein phrog_462 lipoprotein other 1 1 255
AKI28837.1 KR537872_p56 hypothetical protein phrog_6168 unknown function unknown function 1 41874 42083
AKI28800.1 KR537872_p23 hypothetical protein phrog_687 structural protein head and packaging 1 17663 18628
AKI28789.1 KR537872_p38 replicative primase helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism 1 33389 35710
AKI28798.1 KR537872_p9 F-like head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 5222 6316
AKI28802.1 KR537872_p25 hypothetical protein phrog_778 tail assembly protein tail 1 20346 21170
AKI28805.1 KR537872_p34 RecA phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31228 31944
AKI28835.1 KR537872_p47 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 38706 38927
AKI28806.1 KR537872_p57 hypothetical protein phrog_7597 unknown function unknown function 1 42167 42739
AKI28818.1 KR537872_p12 hypothetical protein phrog_9062 unknown function unknown function 1 8122 8526
AKI28801.1 KR537872_p22 hypothetical protein phrog_687 structural protein head and packaging 1 16701 17663
AKI28810.1 KR537872_p14 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 9005 9523
AKI28838.1 KR537872_p37 transcriptional regulator phrog_13059 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 33193 33399
AKI28813.1 KR537872_p54 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 40983 41450
AKI28797.1 KR537872_p31 RecB exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 28814 29911
AKI28792.1 KR537872_p30 dead box helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 27166 28821
AKI28803.1 KR537872_p33 hypothetical protein phrog_6015 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 30423 31169
AKI28841.1 KR537872_p41 hypothetical protein phrog_23937 unknown function unknown function 1 37055 37234
AKI28826.1 KR537872_p51 hypothetical protein phrog_14000 unknown function unknown function 1 39855 40154
AKI28819.1 KR537872_p13 hypothetical protein phrog_10405 virion structural protein head and packaging 1 8592 8993
AKI28832.1 KR537872_p44 hypothetical protein phrog_10560 unknown function unknown function 1 37678 37920
AKI28816.1 KR537872_p20 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 12733 13167
AKI28791.1 KR537872_p24 hypothetical protein phrog_1082 tail assembly protein tail 1 18634 20346
AKI28824.1 KR537872_p19 tail chaperonin phrog_3817 tail chaperonin tail 1 12408 12764
AKI28790.1 KR537872_p27 DNA polymerase phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 23616 25667
AKI28821.1 KR537872_p15 head-tail joining protein phrog_161 head closure Hc1 connector 1 9527 9907
AKI28836.1 KR537872_p49 hypothetical protein phrog_8564 unknown function unknown function 1 39403 39618
AKI28829.1 KR537872_p5 Rz1 phrog_1275 Rz-like spanin lysis 1 1288 1569
AKI28828.1 KR537872_p52 hypothetical protein phrog_14614 endolysin lysis 1 40171 40461
AKI28839.1 KR537872_p39 hypothetical protein phrog_25386 unknown function unknown function 1 35862 36062
AKI28840.1 KR537872_p43 hypothetical protein phrog_20489 unknown function unknown function 1 37524 37703
AKI28808.1 KR537872_p3 endolysin phrog_1259 baseplate hub subunit and tail lysozyme tail 1 511 1056
AKI28822.1 KR537872_p46 hypothetical protein phrog_11401 unknown function unknown function 1 38271 38645
AKI28830.1 KR537872_p2 holin phrog_1356 holin lysis 1 252 518
AKI28842.1 KR537872_p50 hypothetical protein phrog_13844 unknown function unknown function 1 39615 39794
AKI28843.1 KR537872_p40 hypothetical protein phrog_20574 unknown function unknown function 1 36107 36256
AKI28817.1 KR537872_p18 tail chaperonin phrog_313 Tail assembly chaperone tail 1 11971 12399
AKI28794.1 KR537872_p17 major tail tube protein phrog_290 minor tail protein tail 1 10372 11907
AKI28825.1 KR537872_p4 Rz phrog_1026 Rz-like spanin lysis 1 1068 1373
AKI28796.1 KR537872_p28 replicative clamp phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 25679 26821
AKI28807.1 KR537872_p36 MazG phrog_229 MazG-like pyrophosphatase other -1 32516 33073
AKI28827.1 KR537872_p42 hypothetical protein phrog_10287 unknown function unknown function 1 37231 37527
AKI28799.1 KR537872_p11 major capsid protein phrog_247 major head protein head and packaging 1 7075 8052
AKI28820.1 KR537872_p55 hypothetical protein phrog_9241 unknown function unknown function 1 41456 41839