| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KR537872 |
Definition |
Stenotrophomonas phage vB_SmaS-DLP_1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus. |
DB of origin |
PVOG |
Length |
42887 |
Host Name |
Stenotrophomonas maltophilia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
53.71 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AKI28823.1 | KR537872_p29 | hypothetical protein | phrog_11184 | unknown function | unknown function | -1 | 26805 | 27161 |
| AKI28804.1 | KR537872_p10 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6353 | 7072 |
| AKI28795.1 | KR537872_p8 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 3705 | 5210 |
| AKI28812.1 | KR537872_p6 | small terminase subunit | phrog_5334 | terminase small subunit | head and packaging | 1 | 1627 | 2115 |
| AKI28809.1 | KR537872_p32 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 29817 | 30344 |
| AKI28788.1 | KR537872_p26 | central tail hub | phrog_1101 | tail protein | tail | 1 | 21174 | 23615 |
| AKI28793.1 | KR537872_p7 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 2096 | 3691 |
| AKI28814.1 | KR537872_p16 | minor tail protein | phrog_179 | tail terminator | connector | 1 | 9904 | 10359 |
| AKI28834.1 | KR537872_p45 | hypothetical protein | phrog_22104 | unknown function | unknown function | 1 | 38003 | 38224 |
| AKI28833.1 | KR537872_p53 | hypothetical protein | phrog_9844 | unknown function | unknown function | 1 | 40454 | 40687 |
| AKI28815.1 | KR537872_p35 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 31999 | 32439 |
| AKI28811.1 | KR537872_p48 | Vsr endonuclease | phrog_824 | unknown function | unknown function | 1 | 38924 | 39415 |
| AKI28787.1 | KR537872_p21 | tape measure protein | phrog_3336 | tail length tape measure protein | tail | 1 | 13173 | 16700 |
| AKI28831.1 | KR537872_p1 | hypothetical protein | phrog_462 | lipoprotein | other | 1 | 1 | 255 |
| AKI28837.1 | KR537872_p56 | hypothetical protein | phrog_6168 | unknown function | unknown function | 1 | 41874 | 42083 |
| AKI28800.1 | KR537872_p23 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 17663 | 18628 |
| AKI28789.1 | KR537872_p38 | replicative primase helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 33389 | 35710 |
| AKI28798.1 | KR537872_p9 | F-like head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 5222 | 6316 |
| AKI28802.1 | KR537872_p25 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 20346 | 21170 |
| AKI28805.1 | KR537872_p34 | RecA | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31228 | 31944 |
| AKI28835.1 | KR537872_p47 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 38706 | 38927 |
| AKI28806.1 | KR537872_p57 | hypothetical protein | phrog_7597 | unknown function | unknown function | 1 | 42167 | 42739 |
| AKI28818.1 | KR537872_p12 | hypothetical protein | phrog_9062 | unknown function | unknown function | 1 | 8122 | 8526 |
| AKI28801.1 | KR537872_p22 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 16701 | 17663 |
| AKI28810.1 | KR537872_p14 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 9005 | 9523 |
| AKI28838.1 | KR537872_p37 | transcriptional regulator | phrog_13059 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33193 | 33399 |
| AKI28813.1 | KR537872_p54 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 40983 | 41450 |
| AKI28797.1 | KR537872_p31 | RecB exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 28814 | 29911 |
| AKI28792.1 | KR537872_p30 | dead box helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 27166 | 28821 |
| AKI28803.1 | KR537872_p33 | hypothetical protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30423 | 31169 |
| AKI28841.1 | KR537872_p41 | hypothetical protein | phrog_23937 | unknown function | unknown function | 1 | 37055 | 37234 |
| AKI28826.1 | KR537872_p51 | hypothetical protein | phrog_14000 | unknown function | unknown function | 1 | 39855 | 40154 |
| AKI28819.1 | KR537872_p13 | hypothetical protein | phrog_10405 | virion structural protein | head and packaging | 1 | 8592 | 8993 |
| AKI28832.1 | KR537872_p44 | hypothetical protein | phrog_10560 | unknown function | unknown function | 1 | 37678 | 37920 |
| AKI28816.1 | KR537872_p20 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 12733 | 13167 |
| AKI28791.1 | KR537872_p24 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 18634 | 20346 |
| AKI28824.1 | KR537872_p19 | tail chaperonin | phrog_3817 | tail chaperonin | tail | 1 | 12408 | 12764 |
| AKI28790.1 | KR537872_p27 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 23616 | 25667 |
| AKI28821.1 | KR537872_p15 | head-tail joining protein | phrog_161 | head closure Hc1 | connector | 1 | 9527 | 9907 |
| AKI28836.1 | KR537872_p49 | hypothetical protein | phrog_8564 | unknown function | unknown function | 1 | 39403 | 39618 |
| AKI28829.1 | KR537872_p5 | Rz1 | phrog_1275 | Rz-like spanin | lysis | 1 | 1288 | 1569 |
| AKI28828.1 | KR537872_p52 | hypothetical protein | phrog_14614 | endolysin | lysis | 1 | 40171 | 40461 |
| AKI28839.1 | KR537872_p39 | hypothetical protein | phrog_25386 | unknown function | unknown function | 1 | 35862 | 36062 |
| AKI28840.1 | KR537872_p43 | hypothetical protein | phrog_20489 | unknown function | unknown function | 1 | 37524 | 37703 |
| AKI28808.1 | KR537872_p3 | endolysin | phrog_1259 | baseplate hub subunit and tail lysozyme | tail | 1 | 511 | 1056 |
| AKI28822.1 | KR537872_p46 | hypothetical protein | phrog_11401 | unknown function | unknown function | 1 | 38271 | 38645 |
| AKI28830.1 | KR537872_p2 | holin | phrog_1356 | holin | lysis | 1 | 252 | 518 |
| AKI28842.1 | KR537872_p50 | hypothetical protein | phrog_13844 | unknown function | unknown function | 1 | 39615 | 39794 |
| AKI28843.1 | KR537872_p40 | hypothetical protein | phrog_20574 | unknown function | unknown function | 1 | 36107 | 36256 |
| AKI28817.1 | KR537872_p18 | tail chaperonin | phrog_313 | Tail assembly chaperone | tail | 1 | 11971 | 12399 |
| AKI28794.1 | KR537872_p17 | major tail tube protein | phrog_290 | minor tail protein | tail | 1 | 10372 | 11907 |
| AKI28825.1 | KR537872_p4 | Rz | phrog_1026 | Rz-like spanin | lysis | 1 | 1068 | 1373 |
| AKI28796.1 | KR537872_p28 | replicative clamp | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 25679 | 26821 |
| AKI28807.1 | KR537872_p36 | MazG | phrog_229 | MazG-like pyrophosphatase | other | -1 | 32516 | 33073 |
| AKI28827.1 | KR537872_p42 | hypothetical protein | phrog_10287 | unknown function | unknown function | 1 | 37231 | 37527 |
| AKI28799.1 | KR537872_p11 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 7075 | 8052 |
| AKI28820.1 | KR537872_p55 | hypothetical protein | phrog_9241 | unknown function | unknown function | 1 | 41456 | 41839 |