Genomic map of Staphylococcus phage 55-2 (KR709302)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KR709302
Definition
Staphylococcus phage 55-2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; Staphylococcus virus 55.
DB of origin
PVOG
Length
41898
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
35.74
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AKO62026.1 KR709302_p52 hypothetical protein phrog_300 tail fiber protein tail 1 33368 33745
AKO61986.1 KR709302_p12 hypothetical protein phrog_401 unknown function unknown function 1 6049 6309
AKO61977.1 KR709302_p3 hypothetical protein phrog_87 metallo-protease other -1 1703 2164
AKO62004.1 KR709302_p30 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 13803 14009
AKO61975.1 KR709302_p1 integrase phrog_1 integrase integration and excision -1 72 1121
AKO62024.1 KR709302_p50 minor structural protein phrog_287 minor tail protein tail 1 29647 31545
AKO61993.1 KR709302_p19 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 10450 10608
AKO61984.1 KR709302_p10 hypothetical protein phrog_7948 unknown function unknown function -1 4858 5511
AKO62014.1 KR709302_p40 head-tail connector protein phrog_1161 head-tail adaptor connector 1 20861 21175
AKO61979.1 KR709302_p5 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 2692 2940
AKO62015.1 KR709302_p41 head-tail adaptor phrog_25 head closure Hc1 connector 1 21168 21503
AKO62030.1 KR709302_p56 tail fiber protein phrog_1125 tail fiber protein tail 1 36285 37523
AKO62019.1 KR709302_p45 hypothetical protein phrog_183 tail chaperone protein tail 1 22962 23456
AKO62013.1 KR709302_p39 transcriptional terminator phrog_390 Arc-like repressor transcription regulation 1 20535 20861
AKO62027.1 KR709302_p53 hypothetical protein phrog_134 unknown function unknown function 1 33749 33922
AKO61998.1 KR709302_p24 hypothetical protein phrog_258 virulence associated other 1 11819 12061
AKO62035.1 KR709302_p61 hypothetical protein phrog_1529 unknown function unknown function 1 40420 40605
AKO61987.1 KR709302_p13 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6324 6803
AKO62020.1 KR709302_p46 hypothetical protein phrog_1404 tail protein tail 1 23525 23818
AKO62032.1 KR709302_p58 holin phrog_962 holin lysis 1 37979 38416
AKO62000.1 KR709302_p26 hypothetical protein phrog_1034 unknown function unknown function 1 12479 12754
AKO61995.1 KR709302_p21 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 10852 11256
AKO61997.1 KR709302_p23 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 11447 11815
AKO62036.1 KR709302_p62 hypothetical protein phrog_7919 unknown function unknown function 1 40951 41262
AKO62031.1 KR709302_p57 hypothetical protein phrog_1262 unknown function unknown function 1 37528 37923
AKO62008.1 KR709302_p34 terminase large subunit phrog_2 terminase large subunit head and packaging 1 15420 16628
AKO62007.1 KR709302_p33 terminase small subunit phrog_1595 terminase small subunit head and packaging 1 14933 15427
AKO62022.1 KR709302_p48 hypothetical protein phrog_33 distal tail protein Dit tail 1 26805 27740
AKO62023.1 KR709302_p49 minor structural protein phrog_663 minor head protein head and packaging 1 27751 29634
AKO61981.1 KR709302_p7 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 3747 3932
AKO61991.1 KR709302_p17 replication initiation protein phrog_1163 unknown function unknown function 1 8834 9655
AKO62034.1 KR709302_p60 hypothetical protein phrog_4761 unknown function unknown function 1 40109 40237
AKO62017.1 KR709302_p43 hypothetical protein phrog_176 tail terminator connector 1 21916 22353
AKO62018.1 KR709302_p44 hypothetical protein phrog_238 major tail protein tail 1 22340 22900
AKO62006.1 KR709302_p32 late transcriptional regulator LtrC phrog_1058 unknown function unknown function 1 14180 14581
AKO61989.1 KR709302_p15 single stranded DNA-binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7606 8157
AKO61985.1 KR709302_p11 hypothetical protein phrog_989 unknown function unknown function 1 5582 5803
AKO61996.1 KR709302_p22 hypothetical protein phrog_299 unknown function unknown function 1 11261 11446
AKO61982.1 KR709302_p8 antirepressor protein phrog_63 anti-repressor Ant transcription regulation 1 3934 4689
AKO62033.1 KR709302_p59 lysin phrog_635 endolysin lysis 1 38397 39842
AKO62029.1 KR709302_p55 lysin phrog_759 tail associated cell-wall hydrolase other 1 34398 36272
AKO62005.1 KR709302_p31 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 14006 14179
AKO62010.1 KR709302_p36 minor capsid protein phrog_115 minor head protein head and packaging 1 18017 18979
AKO62012.1 KR709302_p38 major capsid protein phrog_544 major head protein head and packaging 1 19694 20518
AKO62021.1 KR709302_p47 tape-measure protein phrog_58 tail length tape measure protein tail 1 23821 26790
AKO61980.1 KR709302_p6 hypothetical protein phrog_847 anti-repressor Ant transcription regulation 1 2953 3396
AKO61978.1 KR709302_p4 Cro/CI family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 2186 2515
AKO61999.1 KR709302_p25 hypothetical protein phrog_467 unknown function unknown function 1 12075 12479
AKO62002.1 KR709302_p28 dimeric dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 12988 13524
AKO62003.1 KR709302_p29 hypothetical protein phrog_2027 unknown function unknown function 1 13561 13806
AKO62011.1 KR709302_p37 minor structural protein phrog_194 head scaffolding protein head and packaging 1 19077 19673
AKO61976.1 KR709302_p2 hypothetical protein phrog_4037 unknown function unknown function -1 1186 1686
AKO62037.1 KR709302_p63 hypothetical protein phrog_7090 unknown function unknown function 1 41255 41632
AKO61990.1 KR709302_p16 hypothetical protein phrog_398 unknown function unknown function 1 8170 8862
AKO62001.1 KR709302_p27 hypothetical protein phrog_266 unknown function unknown function 1 12747 12995
AKO61988.1 KR709302_p14 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6803 7576
AKO62028.1 KR709302_p54 hypothetical protein phrog_276 unknown function unknown function 1 33962 34261
AKO62009.1 KR709302_p35 portal protein phrog_64 portal protein head and packaging 1 16642 18060
AKO62016.1 KR709302_p42 tail protein phrog_5 tail completion or Neck1 protein connector 1 21490 21903
AKO61994.1 KR709302_p20 hypothetical protein phrog_433 unknown function unknown function 1 10621 10842
AKO61992.1 KR709302_p18 DNA replication protein DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 9668 10453
AKO62025.1 KR709302_p51 tail fiber protein phrog_257 minor tail protein tail 1 31545 33368
AKO61983.1 KR709302_p9 hypothetical protein phrog_1263 unknown function unknown function 1 4705 4848