| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KR709302 |
Definition |
Staphylococcus phage 55-2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; Staphylococcus virus 55. |
DB of origin |
PVOG |
Length |
41898 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
63 |
%GC |
35.74 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AKO62026.1 | KR709302_p52 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 33368 | 33745 |
| AKO61986.1 | KR709302_p12 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6049 | 6309 |
| AKO61977.1 | KR709302_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 1703 | 2164 |
| AKO62004.1 | KR709302_p30 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 13803 | 14009 |
| AKO61975.1 | KR709302_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 72 | 1121 |
| AKO62024.1 | KR709302_p50 | minor structural protein | phrog_287 | minor tail protein | tail | 1 | 29647 | 31545 |
| AKO61993.1 | KR709302_p19 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 10450 | 10608 |
| AKO61984.1 | KR709302_p10 | hypothetical protein | phrog_7948 | unknown function | unknown function | -1 | 4858 | 5511 |
| AKO62014.1 | KR709302_p40 | head-tail connector protein | phrog_1161 | head-tail adaptor | connector | 1 | 20861 | 21175 |
| AKO61979.1 | KR709302_p5 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2692 | 2940 |
| AKO62015.1 | KR709302_p41 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 21168 | 21503 |
| AKO62030.1 | KR709302_p56 | tail fiber protein | phrog_1125 | tail fiber protein | tail | 1 | 36285 | 37523 |
| AKO62019.1 | KR709302_p45 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 22962 | 23456 |
| AKO62013.1 | KR709302_p39 | transcriptional terminator | phrog_390 | Arc-like repressor | transcription regulation | 1 | 20535 | 20861 |
| AKO62027.1 | KR709302_p53 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 33749 | 33922 |
| AKO61998.1 | KR709302_p24 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 11819 | 12061 |
| AKO62035.1 | KR709302_p61 | hypothetical protein | phrog_1529 | unknown function | unknown function | 1 | 40420 | 40605 |
| AKO61987.1 | KR709302_p13 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6324 | 6803 |
| AKO62020.1 | KR709302_p46 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 23525 | 23818 |
| AKO62032.1 | KR709302_p58 | holin | phrog_962 | holin | lysis | 1 | 37979 | 38416 |
| AKO62000.1 | KR709302_p26 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 12479 | 12754 |
| AKO61995.1 | KR709302_p21 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 10852 | 11256 |
| AKO61997.1 | KR709302_p23 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 11447 | 11815 |
| AKO62036.1 | KR709302_p62 | hypothetical protein | phrog_7919 | unknown function | unknown function | 1 | 40951 | 41262 |
| AKO62031.1 | KR709302_p57 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 37528 | 37923 |
| AKO62008.1 | KR709302_p34 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 15420 | 16628 |
| AKO62007.1 | KR709302_p33 | terminase small subunit | phrog_1595 | terminase small subunit | head and packaging | 1 | 14933 | 15427 |
| AKO62022.1 | KR709302_p48 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 26805 | 27740 |
| AKO62023.1 | KR709302_p49 | minor structural protein | phrog_663 | minor head protein | head and packaging | 1 | 27751 | 29634 |
| AKO61981.1 | KR709302_p7 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3747 | 3932 |
| AKO61991.1 | KR709302_p17 | replication initiation protein | phrog_1163 | unknown function | unknown function | 1 | 8834 | 9655 |
| AKO62034.1 | KR709302_p60 | hypothetical protein | phrog_4761 | unknown function | unknown function | 1 | 40109 | 40237 |
| AKO62017.1 | KR709302_p43 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 21916 | 22353 |
| AKO62018.1 | KR709302_p44 | hypothetical protein | phrog_238 | major tail protein | tail | 1 | 22340 | 22900 |
| AKO62006.1 | KR709302_p32 | late transcriptional regulator LtrC | phrog_1058 | unknown function | unknown function | 1 | 14180 | 14581 |
| AKO61989.1 | KR709302_p15 | single stranded DNA-binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7606 | 8157 |
| AKO61985.1 | KR709302_p11 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 5582 | 5803 |
| AKO61996.1 | KR709302_p22 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 11261 | 11446 |
| AKO61982.1 | KR709302_p8 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 3934 | 4689 |
| AKO62033.1 | KR709302_p59 | lysin | phrog_635 | endolysin | lysis | 1 | 38397 | 39842 |
| AKO62029.1 | KR709302_p55 | lysin | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 34398 | 36272 |
| AKO62005.1 | KR709302_p31 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 14006 | 14179 |
| AKO62010.1 | KR709302_p36 | minor capsid protein | phrog_115 | minor head protein | head and packaging | 1 | 18017 | 18979 |
| AKO62012.1 | KR709302_p38 | major capsid protein | phrog_544 | major head protein | head and packaging | 1 | 19694 | 20518 |
| AKO62021.1 | KR709302_p47 | tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 23821 | 26790 |
| AKO61980.1 | KR709302_p6 | hypothetical protein | phrog_847 | anti-repressor Ant | transcription regulation | 1 | 2953 | 3396 |
| AKO61978.1 | KR709302_p4 | Cro/CI family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2186 | 2515 |
| AKO61999.1 | KR709302_p25 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 12075 | 12479 |
| AKO62002.1 | KR709302_p28 | dimeric dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 12988 | 13524 |
| AKO62003.1 | KR709302_p29 | hypothetical protein | phrog_2027 | unknown function | unknown function | 1 | 13561 | 13806 |
| AKO62011.1 | KR709302_p37 | minor structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 19077 | 19673 |
| AKO61976.1 | KR709302_p2 | hypothetical protein | phrog_4037 | unknown function | unknown function | -1 | 1186 | 1686 |
| AKO62037.1 | KR709302_p63 | hypothetical protein | phrog_7090 | unknown function | unknown function | 1 | 41255 | 41632 |
| AKO61990.1 | KR709302_p16 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8170 | 8862 |
| AKO62001.1 | KR709302_p27 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 12747 | 12995 |
| AKO61988.1 | KR709302_p14 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6803 | 7576 |
| AKO62028.1 | KR709302_p54 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 33962 | 34261 |
| AKO62009.1 | KR709302_p35 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 16642 | 18060 |
| AKO62016.1 | KR709302_p42 | tail protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21490 | 21903 |
| AKO61994.1 | KR709302_p20 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 10621 | 10842 |
| AKO61992.1 | KR709302_p18 | DNA replication protein DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 9668 | 10453 |
| AKO62025.1 | KR709302_p51 | tail fiber protein | phrog_257 | minor tail protein | tail | 1 | 31545 | 33368 |
| AKO61983.1 | KR709302_p9 | hypothetical protein | phrog_1263 | unknown function | unknown function | 1 | 4705 | 4848 |