| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KR709303 |
Definition |
Staphylococcus phage 55-3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; Staphylococcus virus 55. |
DB of origin |
PVOG |
Length |
42309 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
35.64 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AKO62089.1 | KR709303_p52 | minor structural protein | phrog_287 | minor tail protein | tail | 1 | 30080 | 31978 |
| AKO62088.1 | KR709303_p51 | minor structural protein | phrog_663 | minor head protein | head and packaging | 1 | 28184 | 30067 |
| AKO62094.1 | KR709303_p57 | lysin | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 34831 | 36705 |
| AKO62049.1 | KR709303_p9 | hypothetical protein | phrog_1263 | unknown function | unknown function | 1 | 4705 | 4848 |
| AKO62043.1 | KR709303_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 1703 | 2164 |
| AKO62100.1 | KR709303_p63 | hypothetical protein | phrog_1529 | unknown function | unknown function | 1 | 40838 | 41038 |
| AKO62069.1 | KR709303_p32 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 14236 | 14442 |
| AKO62098.1 | KR709303_p61 | lysin | phrog_635 | endolysin | lysis | 1 | 38830 | 40275 |
| AKO62061.1 | KR709303_p24 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 11694 | 11879 |
| AKO62086.1 | KR709303_p49 | tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 24254 | 27223 |
| AKO62093.1 | KR709303_p56 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 34395 | 34694 |
| AKO62038.1 | KR709303_p10 | hypothetical protein | phrog_7948 | unknown function | unknown function | -1 | 4858 | 5511 |
| AKO62063.1 | KR709303_p26 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 12252 | 12494 |
| AKO62070.1 | KR709303_p33 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 14439 | 14612 |
| AKO62071.1 | KR709303_p34 | late transcriptional regulator LtrC | phrog_1058 | unknown function | unknown function | 1 | 14613 | 15014 |
| AKO62084.1 | KR709303_p47 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 23395 | 23889 |
| AKO62066.1 | KR709303_p29 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 13180 | 13428 |
| AKO62044.1 | KR709303_p4 | Cro/CI family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2186 | 2515 |
| AKO62045.1 | KR709303_p5 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2692 | 2940 |
| AKO62087.1 | KR709303_p50 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 27238 | 28173 |
| AKO62077.1 | KR709303_p40 | major capsid protein | phrog_544 | major head protein | head and packaging | 1 | 20127 | 20951 |
| AKO62091.1 | KR709303_p54 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 33801 | 34178 |
| AKO62056.1 | KR709303_p19 | replication initiation protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9327 | 10097 |
| AKO62078.1 | KR709303_p41 | transcriptional terminator | phrog_390 | Arc-like repressor | transcription regulation | 1 | 20968 | 21294 |
| AKO62082.1 | KR709303_p45 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 22349 | 22786 |
| AKO62052.1 | KR709303_p15 | single stranded DNA-binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7606 | 8157 |
| AKO62073.1 | KR709303_p36 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 15853 | 17061 |
| AKO62085.1 | KR709303_p48 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 23910 | 24251 |
| AKO62074.1 | KR709303_p37 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 17075 | 18493 |
| AKO62090.1 | KR709303_p53 | tail fiber protein | phrog_257 | minor tail protein | tail | 1 | 31978 | 33801 |
| AKO62099.1 | KR709303_p62 | hypothetical protein | phrog_4761 | unknown function | unknown function | 1 | 40542 | 40670 |
| AKO62048.1 | KR709303_p8 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 3934 | 4689 |
| AKO62083.1 | KR709303_p46 | hypothetical protein | phrog_238 | major tail protein | tail | 1 | 22773 | 23333 |
| AKO62040.1 | KR709303_p12 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6049 | 6309 |
| AKO62072.1 | KR709303_p35 | terminase small subunit | phrog_1595 | terminase small subunit | head and packaging | 1 | 15366 | 15860 |
| AKO62080.1 | KR709303_p43 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 21601 | 21936 |
| AKO62054.1 | KR709303_p17 | hypothetical protein | phrog_1902 | unknown function | unknown function | 1 | 8838 | 8987 |
| AKO62097.1 | KR709303_p60 | holin | phrog_962 | holin | lysis | 1 | 38412 | 38849 |
| AKO62064.1 | KR709303_p27 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 12508 | 12912 |
| AKO62042.1 | KR709303_p2 | hypothetical protein | phrog_4037 | unknown function | unknown function | -1 | 1186 | 1686 |
| AKO62053.1 | KR709303_p16 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8170 | 8841 |
| AKO62065.1 | KR709303_p28 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 12912 | 13187 |
| AKO62076.1 | KR709303_p39 | minor structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 19510 | 20106 |
| AKO62057.1 | KR709303_p20 | DNA replication protein DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10107 | 10886 |
| AKO62095.1 | KR709303_p58 | tail fiber protein | phrog_1125 | tail fiber protein | tail | 1 | 36718 | 37956 |
| AKO62060.1 | KR709303_p23 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11285 | 11689 |
| AKO62039.1 | KR709303_p11 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 5582 | 5803 |
| AKO62081.1 | KR709303_p44 | tail protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21923 | 22336 |
| AKO62055.1 | KR709303_p18 | hypothetical protein | phrog_1090 | unknown function | unknown function | -1 | 8980 | 9261 |
| AKO62051.1 | KR709303_p14 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6803 | 7576 |
| AKO62102.1 | KR709303_p65 | hypothetical protein | phrog_7090 | unknown function | unknown function | 1 | 41682 | 42065 |
| AKO62062.1 | KR709303_p25 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 11880 | 12248 |
| AKO62101.1 | KR709303_p64 | hypothetical protein | phrog_7919 | unknown function | unknown function | 1 | 41384 | 41695 |
| AKO62059.1 | KR709303_p22 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11054 | 11275 |
| AKO62079.1 | KR709303_p42 | head-tail connector protein | phrog_1161 | head-tail adaptor | connector | 1 | 21294 | 21608 |
| AKO62041.1 | KR709303_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 72 | 1121 |
| AKO62067.1 | KR709303_p30 | dimeric dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 13421 | 13957 |
| AKO62075.1 | KR709303_p38 | minor capsid protein | phrog_115 | minor head protein | head and packaging | 1 | 18450 | 19412 |
| AKO62050.1 | KR709303_p13 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6324 | 6803 |
| AKO62046.1 | KR709303_p6 | hypothetical protein | phrog_847 | anti-repressor Ant | transcription regulation | 1 | 2953 | 3396 |
| AKO62058.1 | KR709303_p21 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 10880 | 11041 |
| AKO62047.1 | KR709303_p7 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3747 | 3932 |
| AKO62068.1 | KR709303_p31 | hypothetical protein | phrog_2027 | unknown function | unknown function | 1 | 13994 | 14239 |
| AKO62096.1 | KR709303_p59 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 37961 | 38356 |
| AKO62092.1 | KR709303_p55 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 34182 | 34355 |