| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KR935215 |
Definition |
Rhodobacter phage RcSpartan, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Titanvirus; Rhodobacter virus RcSpartan. |
DB of origin |
PVOG |
Length |
44194 |
Host Name |
Rhodobacter capsulatus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
54.88 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AKU43206.1 | KR935215_p23 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 18885 | 19673 |
| AKU43192.1 | KR935215_p9 | minor capsid protein | phrog_241 | head morphogenesis | head and packaging | 1 | 5171 | 6220 |
| AKU43214.1 | KR935215_p31 | exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 28525 | 29442 |
| AKU43237.1 | KR935215_p54 | hypothetical protein | phrog_474 | phosphofructokinase | other | 1 | 41253 | 41549 |
| AKU43202.1 | KR935215_p19 | tail chaperonin | phrog_3817 | tail chaperonin | tail | 1 | 13228 | 13596 |
| AKU43204.1 | KR935215_p21 | tapemeasure | phrog_3336 | tail length tape measure protein | tail | 1 | 13983 | 17144 |
| AKU43189.1 | KR935215_p6 | terminase small subunit | phrog_33410 | terminase small subunit | head and packaging | 1 | 1417 | 2001 |
| AKU43217.1 | KR935215_p34 | recombinase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 30837 | 31520 |
| AKU43198.1 | KR935215_p15 | head-to-tail joining protein | phrog_161 | head closure Hc1 | connector | 1 | 9612 | 10028 |
| AKU43191.1 | KR935215_p8 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 3603 | 5174 |
| AKU43205.1 | KR935215_p22 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 17137 | 18888 |
| AKU43199.1 | KR935215_p16 | minor tail protein | phrog_179 | tail terminator | connector | 1 | 10030 | 10473 |
| AKU43242.1 | KR935215_p59 | hypothetical protein | phrog_9241 | unknown function | unknown function | 1 | 42704 | 43105 |
| AKU43224.1 | KR935215_p41 | hypothetical protein | phrog_38097 | unknown function | unknown function | 1 | 36091 | 36324 |
| AKU43234.1 | KR935215_p51 | hypothetical protein | phrog_29405 | unknown function | unknown function | 1 | 40097 | 40450 |
| AKU43215.1 | KR935215_p32 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 29444 | 29941 |
| AKU43243.1 | KR935215_p60 | hypothetical protein | phrog_32365 | unknown function | unknown function | 1 | 43092 | 43250 |
| AKU43241.1 | KR935215_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42385 | 42690 |
| AKU43193.1 | KR935215_p10 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6266 | 6985 |
| AKU43230.1 | KR935215_p47 | HTH DNA binding protein | phrog_31496 | transcriptional regulator | transcription regulation | 1 | 37693 | 38304 |
| AKU43231.1 | KR935215_p48 | hypothetical protein | phrog_29311 | unknown function | unknown function | 1 | 38666 | 39319 |
| AKU43188.1 | KR935215_p5 | hypothetical protein | phrog_37499 | unknown function | unknown function | 1 | 1186 | 1359 |
| AKU43212.1 | KR935215_p29 | replicative clamp | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 25639 | 26868 |
| AKU43235.1 | KR935215_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40475 | 40753 |
| AKU43223.1 | KR935215_p40 | hypothetical protein | phrog_30401 | unknown function | unknown function | 1 | 35324 | 36031 |
| AKU43210.1 | KR935215_p27 | hypothetical protein | phrog_19311 | unknown function | unknown function | 1 | 22388 | 23596 |
| AKU43190.1 | KR935215_p7 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1982 | 3589 |
| AKU43222.1 | KR935215_p39 | hypothetical protein | phrog_34033 | unknown function | unknown function | 1 | 35165 | 35311 |
| AKU43200.1 | KR935215_p17 | major tail tube | phrog_290 | minor tail protein | tail | 1 | 10492 | 12705 |
| AKU43228.1 | KR935215_p45 | hypothetical protein | phrog_29142 | unknown function | unknown function | 1 | 37272 | 37526 |
| AKU43209.1 | KR935215_p26 | tail protein | phrog_1101 | tail protein | tail | 1 | 20120 | 22387 |
| AKU43233.1 | KR935215_p50 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | 1 | 39516 | 40100 |
| AKU43221.1 | KR935215_p38 | hypothetical protein | phrog_9154 | unknown function | unknown function | 1 | 34870 | 35085 |
| AKU43203.1 | KR935215_p20 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 13544 | 13978 |
| AKU43185.1 | KR935215_p2 | peptidase M15 | phrog_17373 | peptidase | other | 1 | 255 | 911 |
| AKU43226.1 | KR935215_p43 | hypothetical protein | phrog_38604 | unknown function | unknown function | 1 | 36588 | 36809 |
| AKU43197.1 | KR935215_p14 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 9098 | 9610 |
| AKU43194.1 | KR935215_p11 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 7004 | 7984 |
| AKU43219.1 | KR935215_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32267 | 32464 |
| AKU43216.1 | KR935215_p33 | hypothetical protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29999 | 30817 |
| AKU43240.1 | KR935215_p57 | hypothetical protein | phrog_18992 | unknown function | unknown function | 1 | 42107 | 42373 |
| AKU43186.1 | KR935215_p3 | hypothetical protein | phrog_33202 | unknown function | unknown function | 1 | 908 | 1006 |
| AKU43196.1 | KR935215_p13 | hypothetical protein | phrog_28344 | unknown function | unknown function | 1 | 8468 | 9085 |
| AKU43211.1 | KR935215_p28 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 23593 | 25629 |
| AKU43195.1 | KR935215_p12 | hypothetical protein | phrog_9062 | unknown function | unknown function | 1 | 8050 | 8454 |
| AKU43187.1 | KR935215_p4 | hypothetical protein | phrog_34183 | unknown function | unknown function | 1 | 993 | 1229 |
| AKU43201.1 | KR935215_p18 | tail chaperonin | phrog_313 | Tail assembly chaperone | tail | 1 | 12791 | 13210 |
| AKU43184.1 | KR935215_p1 | hypothetical protein | phrog_36946 | unknown function | unknown function | 1 | 1 | 258 |
| AKU43239.1 | KR935215_p56 | hypothetical protein | phrog_29030 | unknown function | unknown function | 1 | 41784 | 42026 |
| AKU43218.1 | KR935215_p35 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 31598 | 32110 |
| AKU43220.1 | KR935215_p37 | replicative primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 32457 | 34769 |
| AKU43236.1 | KR935215_p53 | nuclease | phrog_824 | unknown function | unknown function | 1 | 40750 | 41250 |
| AKU43227.1 | KR935215_p44 | hypothetical protein | phrog_9437 | unknown function | unknown function | 1 | 36920 | 37222 |
| AKU43213.1 | KR935215_p30 | DEAD box helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 26883 | 28532 |
| AKU43229.1 | KR935215_p46 | hypothetical protein | phrog_31936 | unknown function | unknown function | 1 | 37523 | 37696 |
| AKU43207.1 | KR935215_p24 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 19684 | 19905 |
| AKU43232.1 | KR935215_p49 | hypothetical protein | phrog_29760 | unknown function | unknown function | 1 | 39316 | 39519 |
| AKU43225.1 | KR935215_p42 | hypothetical protein | phrog_37117 | unknown function | unknown function | 1 | 36373 | 36588 |
| AKU43238.1 | KR935215_p55 | hypothetical protein | phrog_34105 | unknown function | unknown function | 1 | 41536 | 41787 |
| AKU43244.1 | KR935215_p61 | hypothetical protein | phrog_7597 | unknown function | unknown function | 1 | 43358 | 44017 |
| AKU43208.1 | KR935215_p25 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 19902 | 20117 |