Genomic map of Rhodobacter phage RcSpartan (KR935215)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KR935215
Definition
Rhodobacter phage RcSpartan, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Titanvirus; Rhodobacter virus RcSpartan.
DB of origin
PVOG
Length
44194
Host Name
Rhodobacter capsulatus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
61
%GC
54.88
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AKU43206.1 KR935215_p23 hypothetical protein phrog_778 tail assembly protein tail 1 18885 19673
AKU43192.1 KR935215_p9 minor capsid protein phrog_241 head morphogenesis head and packaging 1 5171 6220
AKU43214.1 KR935215_p31 exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 28525 29442
AKU43237.1 KR935215_p54 hypothetical protein phrog_474 phosphofructokinase other 1 41253 41549
AKU43202.1 KR935215_p19 tail chaperonin phrog_3817 tail chaperonin tail 1 13228 13596
AKU43204.1 KR935215_p21 tapemeasure phrog_3336 tail length tape measure protein tail 1 13983 17144
AKU43189.1 KR935215_p6 terminase small subunit phrog_33410 terminase small subunit head and packaging 1 1417 2001
AKU43217.1 KR935215_p34 recombinase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 30837 31520
AKU43198.1 KR935215_p15 head-to-tail joining protein phrog_161 head closure Hc1 connector 1 9612 10028
AKU43191.1 KR935215_p8 portal protein phrog_145 portal protein head and packaging 1 3603 5174
AKU43205.1 KR935215_p22 hypothetical protein phrog_1082 tail assembly protein tail 1 17137 18888
AKU43199.1 KR935215_p16 minor tail protein phrog_179 tail terminator connector 1 10030 10473
AKU43242.1 KR935215_p59 hypothetical protein phrog_9241 unknown function unknown function 1 42704 43105
AKU43224.1 KR935215_p41 hypothetical protein phrog_38097 unknown function unknown function 1 36091 36324
AKU43234.1 KR935215_p51 hypothetical protein phrog_29405 unknown function unknown function 1 40097 40450
AKU43215.1 KR935215_p32 hypothetical protein phrog_1934 unknown function unknown function -1 29444 29941
AKU43243.1 KR935215_p60 hypothetical protein phrog_32365 unknown function unknown function 1 43092 43250
AKU43241.1 KR935215_p58 hypothetical protein singleton unknown function unknown function 1 42385 42690
AKU43193.1 KR935215_p10 scaffold protein phrog_206 head scaffolding protein head and packaging 1 6266 6985
AKU43230.1 KR935215_p47 HTH DNA binding protein phrog_31496 transcriptional regulator transcription regulation 1 37693 38304
AKU43231.1 KR935215_p48 hypothetical protein phrog_29311 unknown function unknown function 1 38666 39319
AKU43188.1 KR935215_p5 hypothetical protein phrog_37499 unknown function unknown function 1 1186 1359
AKU43212.1 KR935215_p29 replicative clamp phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 25639 26868
AKU43235.1 KR935215_p52 hypothetical protein singleton unknown function unknown function 1 40475 40753
AKU43223.1 KR935215_p40 hypothetical protein phrog_30401 unknown function unknown function 1 35324 36031
AKU43210.1 KR935215_p27 hypothetical protein phrog_19311 unknown function unknown function 1 22388 23596
AKU43190.1 KR935215_p7 terminase large subunit phrog_2 terminase large subunit head and packaging 1 1982 3589
AKU43222.1 KR935215_p39 hypothetical protein phrog_34033 unknown function unknown function 1 35165 35311
AKU43200.1 KR935215_p17 major tail tube phrog_290 minor tail protein tail 1 10492 12705
AKU43228.1 KR935215_p45 hypothetical protein phrog_29142 unknown function unknown function 1 37272 37526
AKU43209.1 KR935215_p26 tail protein phrog_1101 tail protein tail 1 20120 22387
AKU43233.1 KR935215_p50 nucleotide pyrophosphohydrolase phrog_229 MazG-like pyrophosphatase other 1 39516 40100
AKU43221.1 KR935215_p38 hypothetical protein phrog_9154 unknown function unknown function 1 34870 35085
AKU43203.1 KR935215_p20 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 13544 13978
AKU43185.1 KR935215_p2 peptidase M15 phrog_17373 peptidase other 1 255 911
AKU43226.1 KR935215_p43 hypothetical protein phrog_38604 unknown function unknown function 1 36588 36809
AKU43197.1 KR935215_p14 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 9098 9610
AKU43194.1 KR935215_p11 major capsid protein phrog_247 major head protein head and packaging 1 7004 7984
AKU43219.1 KR935215_p36 hypothetical protein singleton unknown function unknown function 1 32267 32464
AKU43216.1 KR935215_p33 hypothetical protein phrog_6015 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 29999 30817
AKU43240.1 KR935215_p57 hypothetical protein phrog_18992 unknown function unknown function 1 42107 42373
AKU43186.1 KR935215_p3 hypothetical protein phrog_33202 unknown function unknown function 1 908 1006
AKU43196.1 KR935215_p13 hypothetical protein phrog_28344 unknown function unknown function 1 8468 9085
AKU43211.1 KR935215_p28 DNA polymerase phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 23593 25629
AKU43195.1 KR935215_p12 hypothetical protein phrog_9062 unknown function unknown function 1 8050 8454
AKU43187.1 KR935215_p4 hypothetical protein phrog_34183 unknown function unknown function 1 993 1229
AKU43201.1 KR935215_p18 tail chaperonin phrog_313 Tail assembly chaperone tail 1 12791 13210
AKU43184.1 KR935215_p1 hypothetical protein phrog_36946 unknown function unknown function 1 1 258
AKU43239.1 KR935215_p56 hypothetical protein phrog_29030 unknown function unknown function 1 41784 42026
AKU43218.1 KR935215_p35 hypothetical protein phrog_2480 unknown function unknown function -1 31598 32110
AKU43220.1 KR935215_p37 replicative primase/helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism 1 32457 34769
AKU43236.1 KR935215_p53 nuclease phrog_824 unknown function unknown function 1 40750 41250
AKU43227.1 KR935215_p44 hypothetical protein phrog_9437 unknown function unknown function 1 36920 37222
AKU43213.1 KR935215_p30 DEAD box helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 26883 28532
AKU43229.1 KR935215_p46 hypothetical protein phrog_31936 unknown function unknown function 1 37523 37696
AKU43207.1 KR935215_p24 hypothetical protein phrog_1180 tail assembly chaperone tail 1 19684 19905
AKU43232.1 KR935215_p49 hypothetical protein phrog_29760 unknown function unknown function 1 39316 39519
AKU43225.1 KR935215_p42 hypothetical protein phrog_37117 unknown function unknown function 1 36373 36588
AKU43238.1 KR935215_p55 hypothetical protein phrog_34105 unknown function unknown function 1 41536 41787
AKU43244.1 KR935215_p61 hypothetical protein phrog_7597 unknown function unknown function 1 43358 44017
AKU43208.1 KR935215_p25 hypothetical protein phrog_1196 tail assembly chaperone tail 1 19902 20117