Genomic map of Roseobacter phage RDJL Phi 2 (KT266805)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KT266805
Definition
Roseobacter phage RDJL Phi 2, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Xiamenvirus; Roseobacter virus RDJL2.
DB of origin
PVOG
Length
63513
Host Name
Roseobacter denitrificans
Host domain
Bacteria
Is prophage?
undef
Number of proteins
76
%GC
57.29
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AKQ75860.1 KT266805_p70 glycoside hydrolase phrog_2913 glycoside hydrolase other 1 55867 56487
AKQ75825.1 KT266805_p35 hypothetical protein phrog_33630 unknown function unknown function -1 24382 24636
AKQ75794.1 KT266805_p4 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 1060 2331
AKQ75865.1 KT266805_p75 hypothetical protein phrog_35163 unknown function unknown function 1 63006 63245
AKQ75853.1 KT266805_p63 capsid related protein phrog_1005 major head protein head and packaging 1 47756 48790
AKQ75819.1 KT266805_p29 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 20725 21366
AKQ75806.1 KT266805_p16 hypothetical protein phrog_11422 unknown function unknown function -1 10278 11039
AKQ75832.1 KT266805_p42 hypothetical protein phrog_32511 unknown function unknown function 1 30362 30592
AKQ75798.1 KT266805_p8 hypothetical protein phrog_37268 unknown function unknown function -1 5490 6140
AKQ75795.1 KT266805_p5 ribonucleotide reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 2952 4712
AKQ75807.1 KT266805_p17 hypothetical protein phrog_34628 unknown function unknown function -1 11032 11232
AKQ75830.1 KT266805_p40 membrane spanning protein TolA phrog_32389 unknown function unknown function -1 27260 27718
AKQ75856.1 KT266805_p66 structural protein phrog_179 tail terminator connector 1 49925 50341
AKQ75816.1 KT266805_p26 hypothetical protein phrog_38812 unknown function unknown function -1 18482 18733
AKQ75841.1 KT266805_p51 hypothetical protein singleton unknown function unknown function 1 36114 37169
AKQ75822.1 KT266805_p32 transcriptional regulator CtrA phrog_31800 transcriptional regulator transcription regulation -1 22252 22707
AKQ75811.1 KT266805_p21 hypothetical protein phrog_38356 unknown function unknown function -1 13875 14312
AKQ75796.1 KT266805_p6 hypothetical protein phrog_29108 unknown function unknown function -1 4796 5083
AKQ75805.1 KT266805_p15 Cof hydrolase phrog_38514 unknown function unknown function -1 9134 10180
AKQ75840.1 KT266805_p50 hypothetical protein singleton unknown function unknown function 1 35383 35622
AKQ75859.1 KT266805_p69 tail tape measure protein phrog_38390 tail length tape measure protein tail 1 52777 55866
AKQ75821.1 KT266805_p31 hypothetical protein phrog_35341 unknown function unknown function -1 22037 22255
AKQ75803.1 KT266805_p13 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 7787 8257
AKQ75815.1 KT266805_p25 hypothetical protein phrog_2855 unknown function unknown function -1 18230 18466
AKQ75861.1 KT266805_p71 gene transfer agent phrog_778 tail assembly protein tail 1 56484 57389
AKQ75862.1 KT266805_p72 cell wall peptidase phrog_329 minor tail protein tail 1 57481 57807
AKQ75846.1 KT266805_p56 hypothetical protein phrog_113 portal protein head and packaging 1 42221 43666
AKQ75843.1 KT266805_p53 hypothetical protein phrog_4044 terminase small subunit head and packaging 1 38075 38647
AKQ75850.1 KT266805_p60 hypothetical protein phrog_1530 DNA methyltransferase other 1 45704 46102
AKQ75804.1 KT266805_p14 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 8254 9144
AKQ75847.1 KT266805_p57 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 43666 44262
AKQ75823.1 KT266805_p33 ATPase phrog_31864 unknown function unknown function -1 23101 24045
AKQ75833.1 KT266805_p43 hypothetical protein phrog_34904 unknown function unknown function 1 30589 30831
AKQ75813.1 KT266805_p23 hypothetical protein phrog_6247 DNA topoisomerase DNA, RNA and nucleotide metabolism -1 14723 15646
AKQ75849.1 KT266805_p59 head morphogenesis protein phrog_3517 head morphogenesis head and packaging 1 44650 45612
AKQ75814.1 KT266805_p24 DNA polymerase A domain protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 15710 18226
AKQ75791.1 KT266805_p1 hypothetical protein phrog_739 Rz-like spanin lysis 1 1 432
AKQ75793.1 KT266805_p3 hypothetical protein phrog_6420 unknown function unknown function 1 695 1015
AKQ75837.1 KT266805_p47 hypothetical protein phrog_28846 unknown function unknown function 1 33772 34143
AKQ75854.1 KT266805_p64 hypothetical protein phrog_32158 unknown function unknown function 1 48864 49514
AKQ75842.1 KT266805_p52 hypothetical protein phrog_17001 endolysin lysis 1 37228 37905
AKQ75855.1 KT266805_p65 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 49518 49928
AKQ75834.1 KT266805_p44 hypothetical protein phrog_2072 unknown function unknown function 1 30828 31190
AKQ75858.1 KT266805_p68 hypothetical protein phrog_313 Tail assembly chaperone tail 1 51965 52411
AKQ75797.1 KT266805_p7 hypothetical protein phrog_26036 unknown function unknown function -1 5244 5480
AKQ75808.1 KT266805_p18 hypothetical protein phrog_38698 unknown function unknown function -1 11324 11632
AKQ75851.1 KT266805_p61 hypothetical protein phrog_24785 unknown function unknown function 1 46104 47213
AKQ75866.1 KT266805_p76 hypothetical protein singleton unknown function unknown function 1 63293 63448
AKQ75857.1 KT266805_p67 major capsid protein phrog_290 minor tail protein tail 1 50359 51879
AKQ75792.1 KT266805_p2 hypothetical protein phrog_812 Rz-like spanin lysis 1 413 688
AKQ75836.1 KT266805_p46 hypothetical protein phrog_30970 unknown function unknown function 1 31885 32217
AKQ75863.1 KT266805_p73 gene transfer agent phrog_4271 tail protein tail 1 57811 61893
AKQ75848.1 KT266805_p58 hypothetical protein phrog_161 head closure Hc1 connector 1 44275 44649
AKQ75818.1 KT266805_p28 hypothetical protein phrog_36992 unknown function unknown function 1 20338 20640
AKQ75831.1 KT266805_p41 integrase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 27887 30295
AKQ75835.1 KT266805_p45 hypothetical protein phrog_31323 unknown function unknown function 1 31386 31766
AKQ75817.1 KT266805_p27 hypothetical protein phrog_1250 unknown function unknown function -1 19139 20170
AKQ75812.1 KT266805_p22 hypothetical protein phrog_25001 unknown function unknown function 1 14398 14670
AKQ75802.1 KT266805_p12 dihydrofolate reductase phrog_13578 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 7272 7796
AKQ75809.1 KT266805_p19 hypothetical protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 11728 13266
AKQ75799.1 KT266805_p9 hypothetical protein phrog_14596 unknown function unknown function 1 6336 6557
AKQ75820.1 KT266805_p30 exonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 21501 22037
AKQ75844.1 KT266805_p54 terminase large subunit phrog_2 terminase large subunit head and packaging 1 38651 40009
AKQ75826.1 KT266805_p36 hypothetical protein phrog_32083 unknown function unknown function -1 24629 24913
AKQ75827.1 KT266805_p37 CRISPR/Cas system-associated protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 24910 26352
AKQ75864.1 KT266805_p74 ribonuclease III phrog_15388 unknown function unknown function 1 61903 62997
AKQ75852.1 KT266805_p62 hypothetical protein phrog_673 head scaffolding protein head and packaging 1 47292 47717
AKQ75839.1 KT266805_p49 endonuclease V phrog_1183 endonuclease V N-glycosylase UV repair enzyme DNA, RNA and nucleotide metabolism 1 35024 35386
AKQ75845.1 KT266805_p55 N-acyl-L-homoserine lactone synthetase singleton unknown function unknown function -1 40325 40879
AKQ75801.1 KT266805_p11 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism -1 6833 7297
AKQ75800.1 KT266805_p10 hypothetical protein phrog_34896 unknown function unknown function 1 6557 6832
AKQ75829.1 KT266805_p39 hypothetical protein phrog_30481 unknown function unknown function -1 26613 26822
AKQ75828.1 KT266805_p38 hypothetical protein phrog_3848 unknown function unknown function -1 26353 26613
AKQ75810.1 KT266805_p20 hydrolase of HD superfamily phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other -1 13270 13863
AKQ75824.1 KT266805_p34 hypothetical protein phrog_30993 unknown function unknown function -1 24051 24389
AKQ75838.1 KT266805_p48 hypothetical protein phrog_3230 unknown function unknown function 1 34288 34827