| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KT266805 |
Definition |
Roseobacter phage RDJL Phi 2, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Xiamenvirus; Roseobacter virus RDJL2. |
DB of origin |
PVOG |
Length |
63513 |
Host Name |
Roseobacter denitrificans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
76 |
%GC |
57.29 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AKQ75860.1 | KT266805_p70 | glycoside hydrolase | phrog_2913 | glycoside hydrolase | other | 1 | 55867 | 56487 |
| AKQ75825.1 | KT266805_p35 | hypothetical protein | phrog_33630 | unknown function | unknown function | -1 | 24382 | 24636 |
| AKQ75794.1 | KT266805_p4 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 1060 | 2331 |
| AKQ75865.1 | KT266805_p75 | hypothetical protein | phrog_35163 | unknown function | unknown function | 1 | 63006 | 63245 |
| AKQ75853.1 | KT266805_p63 | capsid related protein | phrog_1005 | major head protein | head and packaging | 1 | 47756 | 48790 |
| AKQ75819.1 | KT266805_p29 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 20725 | 21366 |
| AKQ75806.1 | KT266805_p16 | hypothetical protein | phrog_11422 | unknown function | unknown function | -1 | 10278 | 11039 |
| AKQ75832.1 | KT266805_p42 | hypothetical protein | phrog_32511 | unknown function | unknown function | 1 | 30362 | 30592 |
| AKQ75798.1 | KT266805_p8 | hypothetical protein | phrog_37268 | unknown function | unknown function | -1 | 5490 | 6140 |
| AKQ75795.1 | KT266805_p5 | ribonucleotide reductase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 2952 | 4712 |
| AKQ75807.1 | KT266805_p17 | hypothetical protein | phrog_34628 | unknown function | unknown function | -1 | 11032 | 11232 |
| AKQ75830.1 | KT266805_p40 | membrane spanning protein TolA | phrog_32389 | unknown function | unknown function | -1 | 27260 | 27718 |
| AKQ75856.1 | KT266805_p66 | structural protein | phrog_179 | tail terminator | connector | 1 | 49925 | 50341 |
| AKQ75816.1 | KT266805_p26 | hypothetical protein | phrog_38812 | unknown function | unknown function | -1 | 18482 | 18733 |
| AKQ75841.1 | KT266805_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36114 | 37169 |
| AKQ75822.1 | KT266805_p32 | transcriptional regulator CtrA | phrog_31800 | transcriptional regulator | transcription regulation | -1 | 22252 | 22707 |
| AKQ75811.1 | KT266805_p21 | hypothetical protein | phrog_38356 | unknown function | unknown function | -1 | 13875 | 14312 |
| AKQ75796.1 | KT266805_p6 | hypothetical protein | phrog_29108 | unknown function | unknown function | -1 | 4796 | 5083 |
| AKQ75805.1 | KT266805_p15 | Cof hydrolase | phrog_38514 | unknown function | unknown function | -1 | 9134 | 10180 |
| AKQ75840.1 | KT266805_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35383 | 35622 |
| AKQ75859.1 | KT266805_p69 | tail tape measure protein | phrog_38390 | tail length tape measure protein | tail | 1 | 52777 | 55866 |
| AKQ75821.1 | KT266805_p31 | hypothetical protein | phrog_35341 | unknown function | unknown function | -1 | 22037 | 22255 |
| AKQ75803.1 | KT266805_p13 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 7787 | 8257 |
| AKQ75815.1 | KT266805_p25 | hypothetical protein | phrog_2855 | unknown function | unknown function | -1 | 18230 | 18466 |
| AKQ75861.1 | KT266805_p71 | gene transfer agent | phrog_778 | tail assembly protein | tail | 1 | 56484 | 57389 |
| AKQ75862.1 | KT266805_p72 | cell wall peptidase | phrog_329 | minor tail protein | tail | 1 | 57481 | 57807 |
| AKQ75846.1 | KT266805_p56 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 42221 | 43666 |
| AKQ75843.1 | KT266805_p53 | hypothetical protein | phrog_4044 | terminase small subunit | head and packaging | 1 | 38075 | 38647 |
| AKQ75850.1 | KT266805_p60 | hypothetical protein | phrog_1530 | DNA methyltransferase | other | 1 | 45704 | 46102 |
| AKQ75804.1 | KT266805_p14 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 8254 | 9144 |
| AKQ75847.1 | KT266805_p57 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 43666 | 44262 |
| AKQ75823.1 | KT266805_p33 | ATPase | phrog_31864 | unknown function | unknown function | -1 | 23101 | 24045 |
| AKQ75833.1 | KT266805_p43 | hypothetical protein | phrog_34904 | unknown function | unknown function | 1 | 30589 | 30831 |
| AKQ75813.1 | KT266805_p23 | hypothetical protein | phrog_6247 | DNA topoisomerase | DNA, RNA and nucleotide metabolism | -1 | 14723 | 15646 |
| AKQ75849.1 | KT266805_p59 | head morphogenesis protein | phrog_3517 | head morphogenesis | head and packaging | 1 | 44650 | 45612 |
| AKQ75814.1 | KT266805_p24 | DNA polymerase A domain protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 15710 | 18226 |
| AKQ75791.1 | KT266805_p1 | hypothetical protein | phrog_739 | Rz-like spanin | lysis | 1 | 1 | 432 |
| AKQ75793.1 | KT266805_p3 | hypothetical protein | phrog_6420 | unknown function | unknown function | 1 | 695 | 1015 |
| AKQ75837.1 | KT266805_p47 | hypothetical protein | phrog_28846 | unknown function | unknown function | 1 | 33772 | 34143 |
| AKQ75854.1 | KT266805_p64 | hypothetical protein | phrog_32158 | unknown function | unknown function | 1 | 48864 | 49514 |
| AKQ75842.1 | KT266805_p52 | hypothetical protein | phrog_17001 | endolysin | lysis | 1 | 37228 | 37905 |
| AKQ75855.1 | KT266805_p65 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 49518 | 49928 |
| AKQ75834.1 | KT266805_p44 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 30828 | 31190 |
| AKQ75858.1 | KT266805_p68 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 51965 | 52411 |
| AKQ75797.1 | KT266805_p7 | hypothetical protein | phrog_26036 | unknown function | unknown function | -1 | 5244 | 5480 |
| AKQ75808.1 | KT266805_p18 | hypothetical protein | phrog_38698 | unknown function | unknown function | -1 | 11324 | 11632 |
| AKQ75851.1 | KT266805_p61 | hypothetical protein | phrog_24785 | unknown function | unknown function | 1 | 46104 | 47213 |
| AKQ75866.1 | KT266805_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63293 | 63448 |
| AKQ75857.1 | KT266805_p67 | major capsid protein | phrog_290 | minor tail protein | tail | 1 | 50359 | 51879 |
| AKQ75792.1 | KT266805_p2 | hypothetical protein | phrog_812 | Rz-like spanin | lysis | 1 | 413 | 688 |
| AKQ75836.1 | KT266805_p46 | hypothetical protein | phrog_30970 | unknown function | unknown function | 1 | 31885 | 32217 |
| AKQ75863.1 | KT266805_p73 | gene transfer agent | phrog_4271 | tail protein | tail | 1 | 57811 | 61893 |
| AKQ75848.1 | KT266805_p58 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 44275 | 44649 |
| AKQ75818.1 | KT266805_p28 | hypothetical protein | phrog_36992 | unknown function | unknown function | 1 | 20338 | 20640 |
| AKQ75831.1 | KT266805_p41 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 27887 | 30295 |
| AKQ75835.1 | KT266805_p45 | hypothetical protein | phrog_31323 | unknown function | unknown function | 1 | 31386 | 31766 |
| AKQ75817.1 | KT266805_p27 | hypothetical protein | phrog_1250 | unknown function | unknown function | -1 | 19139 | 20170 |
| AKQ75812.1 | KT266805_p22 | hypothetical protein | phrog_25001 | unknown function | unknown function | 1 | 14398 | 14670 |
| AKQ75802.1 | KT266805_p12 | dihydrofolate reductase | phrog_13578 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 7272 | 7796 |
| AKQ75809.1 | KT266805_p19 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 11728 | 13266 |
| AKQ75799.1 | KT266805_p9 | hypothetical protein | phrog_14596 | unknown function | unknown function | 1 | 6336 | 6557 |
| AKQ75820.1 | KT266805_p30 | exonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 21501 | 22037 |
| AKQ75844.1 | KT266805_p54 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 38651 | 40009 |
| AKQ75826.1 | KT266805_p36 | hypothetical protein | phrog_32083 | unknown function | unknown function | -1 | 24629 | 24913 |
| AKQ75827.1 | KT266805_p37 | CRISPR/Cas system-associated protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 24910 | 26352 |
| AKQ75864.1 | KT266805_p74 | ribonuclease III | phrog_15388 | unknown function | unknown function | 1 | 61903 | 62997 |
| AKQ75852.1 | KT266805_p62 | hypothetical protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 47292 | 47717 |
| AKQ75839.1 | KT266805_p49 | endonuclease V | phrog_1183 | endonuclease V N-glycosylase UV repair enzyme | DNA, RNA and nucleotide metabolism | 1 | 35024 | 35386 |
| AKQ75845.1 | KT266805_p55 | N-acyl-L-homoserine lactone synthetase | singleton | unknown function | unknown function | -1 | 40325 | 40879 |
| AKQ75801.1 | KT266805_p11 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 6833 | 7297 |
| AKQ75800.1 | KT266805_p10 | hypothetical protein | phrog_34896 | unknown function | unknown function | 1 | 6557 | 6832 |
| AKQ75829.1 | KT266805_p39 | hypothetical protein | phrog_30481 | unknown function | unknown function | -1 | 26613 | 26822 |
| AKQ75828.1 | KT266805_p38 | hypothetical protein | phrog_3848 | unknown function | unknown function | -1 | 26353 | 26613 |
| AKQ75810.1 | KT266805_p20 | hydrolase of HD superfamily | phrog_318 | deoxyribonucleoside 5' monophosphate phosphatase | other | -1 | 13270 | 13863 |
| AKQ75824.1 | KT266805_p34 | hypothetical protein | phrog_30993 | unknown function | unknown function | -1 | 24051 | 24389 |
| AKQ75838.1 | KT266805_p48 | hypothetical protein | phrog_3230 | unknown function | unknown function | 1 | 34288 | 34827 |