| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KT381864 |
Definition |
Thiobacimonas phage vB_ThpS-P1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
39591 |
Host Name |
Thiobacimonas profunda |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
66.73 |
Number of singletons |
15 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALF02084.1 | KT381864_p45 | hypothetical protein | phrog_13335 | unknown function | unknown function | -1 | 33560 | 33841 |
| ALF02076.1 | KT381864_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27975 | 28193 |
| ALF02054.1 | KT381864_p15 | hypothetical protein | phrog_195 | head-tail adaptor | connector | -1 | 14548 | 14976 |
| ALF02086.1 | KT381864_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34317 | 34751 |
| ALF02051.1 | KT381864_p12 | hypothetical protein | phrog_290 | minor tail protein | tail | -1 | 13030 | 13962 |
| ALF02061.1 | KT381864_p22 | hypothetical protein | phrog_113 | portal protein | head and packaging | -1 | 19306 | 20946 |
| ALF02071.1 | KT381864_p32 | N-acetylmuramoyl-L-alanine amidase | phrog_1794 | amidase | lysis | -1 | 25280 | 26146 |
| ALF02087.1 | KT381864_p48 | Cro/CI family transcriptional regulator | phrog_4 | transcriptional repressor | transcription regulation | 1 | 35049 | 35729 |
| ALF02072.1 | KT381864_p33 | hypothetical protein | phrog_836 | late transcriptional activator | transcription regulation | -1 | 26254 | 26643 |
| ALF02058.1 | KT381864_p19 | hypothetical protein | phrog_328 | head maturation protease | head and packaging | -1 | 16807 | 17850 |
| ALF02078.1 | KT381864_p39 | hypothetical protein | phrog_15963 | unknown function | unknown function | -1 | 28465 | 28845 |
| ALF02047.1 | KT381864_p8 | D-alanyl-D-alanine carboxypeptidase family protein | phrog_19487 | tail length tape measure protein | tail | -1 | 8819 | 12115 |
| ALF02083.1 | KT381864_p44 | ParB-like nuclease domain protein | phrog_3264 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 32647 | 33549 |
| ALF02053.1 | KT381864_p14 | hypothetical protein | phrog_209 | portal protein | head and packaging | -1 | 14117 | 14548 |
| ALF02067.1 | KT381864_p28 | hypothetical protein | phrog_436 | unknown function | unknown function | -1 | 23902 | 24198 |
| ALF02069.1 | KT381864_p30 | hypothetical protein | phrog_25396 | unknown function | unknown function | -1 | 24548 | 24865 |
| ALF02065.1 | KT381864_p26 | hypothetical protein | phrog_15183 | unknown function | unknown function | -1 | 23047 | 23343 |
| ALF02073.1 | KT381864_p34 | hypothetical protein | phrog_8252 | unknown function | unknown function | -1 | 26636 | 26902 |
| ALF02046.1 | KT381864_p7 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 8400 | 8822 |
| ALF02074.1 | KT381864_p35 | protein of unknown function DUF1018 | phrog_286 | unknown function | unknown function | -1 | 26899 | 27342 |
| ALF02081.1 | KT381864_p42 | hypothetical protein | phrog_296 | DNA transposition protein | integration and excision | -1 | 29760 | 30530 |
| ALF02066.1 | KT381864_p27 | terminase small subunit | phrog_426 | terminase small subunit | head and packaging | -1 | 23340 | 23900 |
| ALF02090.1 | KT381864_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36581 | 38005 |
| ALF02077.1 | KT381864_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28190 | 28426 |
| ALF02079.1 | KT381864_p40 | hypothetical protein | phrog_2119 | unknown function | unknown function | -1 | 28838 | 29209 |
| ALF02057.1 | KT381864_p18 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | -1 | 16376 | 16807 |
| ALF02052.1 | KT381864_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13959 | 14120 |
| ALF02040.1 | KT381864_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 172 | 324 |
| ALF02044.1 | KT381864_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7367 | 7759 |
| ALF02064.1 | KT381864_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22907 | 23047 |
| ALF02059.1 | KT381864_p20 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | -1 | 17977 | 18492 |
| ALF02070.1 | KT381864_p31 | hypothetical protein | phrog_17576 | unknown function | unknown function | -1 | 24874 | 25269 |
| ALF02060.1 | KT381864_p21 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | -1 | 18492 | 19313 |
| ALF02041.1 | KT381864_p2 | tail fiber protein | singleton | unknown function | unknown function | -1 | 318 | 3536 |
| ALF02089.1 | KT381864_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36373 | 36549 |
| ALF02048.1 | KT381864_p9 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | -1 | 12117 | 12359 |
| ALF02088.1 | KT381864_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36281 | 36421 |
| ALF02085.1 | KT381864_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33838 | 34320 |
| ALF02045.1 | KT381864_p6 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 7879 | 8403 |
| ALF02050.1 | KT381864_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12797 | 13000 |
| ALF02063.1 | KT381864_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22465 | 22725 |
| ALF02068.1 | KT381864_p29 | hypothetical protein | phrog_736 | unknown function | unknown function | -1 | 24195 | 24551 |
| ALF02055.1 | KT381864_p16 | hypothetical protein | phrog_27280 | unknown function | unknown function | -1 | 15069 | 15455 |
| ALF02082.1 | KT381864_p43 | hypothetical protein | phrog_310 | transposase | integration and excision | -1 | 30549 | 32654 |
| ALF02043.1 | KT381864_p4 | hypothetical protein | phrog_329 | minor tail protein | tail | -1 | 6894 | 7295 |
| ALF02056.1 | KT381864_p17 | major capsid protein | phrog_371 | major head protein | head and packaging | -1 | 15467 | 16360 |
| ALF02049.1 | KT381864_p10 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | -1 | 12461 | 12769 |
| ALF02062.1 | KT381864_p23 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 21056 | 22468 |
| ALF02080.1 | KT381864_p41 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | -1 | 29206 | 29763 |
| ALF02075.1 | KT381864_p36 | hypothetical protein | phrog_846 | unknown function | unknown function | -1 | 27358 | 27978 |
| ALF02091.1 | KT381864_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37995 | 38840 |
| ALF02042.1 | KT381864_p3 | tail component | phrog_31 | central tail fiber J | tail | -1 | 3547 | 6897 |