Genomic map of Pseudomonas phage phi1 (KT887557)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KT887557
Definition
Pseudomonas phage phi1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
57218
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
69
%GC
57.49
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ALY08182.1 KT887557_p59 HNH endonuclease family protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 50408 50929
ALY08155.1 KT887557_p32 hypothetical protein phrog_319 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism -1 29346 29933
ALY08173.1 KT887557_p50 hypothetical protein phrog_13871 unknown function unknown function 1 44480 44869
ALY08145.1 KT887557_p22 terminase small subunit phrog_83 terminase small subunit head and packaging -1 23254 23634
ALY08139.1 KT887557_p16 head-tail adapter protein phrog_25 head closure Hc1 connector -1 16515 16856
ALY08130.1 KT887557_p7 protein of unknown function DUF1833 phrog_396 minor tail protein tail -1 9485 9847
ALY08141.1 KT887557_p18 major capsid protein phrog_10 major head protein head and packaging -1 17936 19123
ALY08142.1 KT887557_p19 ATP-dependent Clp protease proteolytic subunit phrog_1684 head maturation protease head and packaging -1 19120 20010
ALY08167.1 KT887557_p44 hypothetical protein phrog_7788 unknown function unknown function 1 39535 39741
ALY08160.1 KT887557_p37 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation -1 34193 34657
ALY08154.1 KT887557_p31 hypothetical protein singleton unknown function unknown function -1 29086 29145
ALY08189.1 KT887557_p66 hypothetical protein phrog_24413 unknown function unknown function 1 53678 53890
ALY08131.1 KT887557_p8 alkanesulfonate transport protein phrog_384 virion structural protein head and packaging -1 9960 10439
ALY08127.1 KT887557_p4 hypothetical protein singleton unknown function unknown function 1 1976 3337
ALY08192.1 KT887557_p69 site-specific recombinase phrog_1 integrase integration and excision 1 55970 57187
ALY08132.1 KT887557_p9 tail tape measure protein phrog_2854 tail length tape measure protein tail -1 10436 12964
ALY08186.1 KT887557_p63 HNH endonuclease family protein singleton unknown function unknown function 1 52489 52749
ALY08168.1 KT887557_p45 hypothetical protein phrog_25313 unknown function unknown function 1 39885 40067
ALY08157.1 KT887557_p34 hypothetical protein phrog_4405 unknown function unknown function -1 30450 30932
ALY08149.1 KT887557_p26 protein of unknown function DUF754 phrog_217 holin lysis -1 25373 25657
ALY08170.1 KT887557_p47 Ydd phrog_12644 unknown function unknown function 1 41119 41763
ALY08184.1 KT887557_p61 hypothetical protein phrog_4887 unknown function unknown function 1 51201 51482
ALY08136.1 KT887557_p13 Flp pilus assembly protein phrog_78 tail terminator connector -1 14256 14621
ALY08166.1 KT887557_p43 hypothetical protein phrog_9139 unknown function unknown function 1 39318 39524
ALY08133.1 KT887557_p10 hypothetical protein phrog_337 tail protein tail -1 13013 13267
ALY08187.1 KT887557_p64 hypothetical protein phrog_7427 unknown function unknown function 1 52794 53111
ALY08177.1 KT887557_p54 recombination protein bet phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 46799 47545
ALY08172.1 KT887557_p49 hypothetical protein phrog_24413 unknown function unknown function 1 43358 43582
ALY08151.1 KT887557_p28 hypothetical protein phrog_32732 unknown function unknown function -1 26367 26792
ALY08188.1 KT887557_p65 hypothetical protein phrog_5315 unknown function unknown function 1 53264 53410
ALY08134.1 KT887557_p11 hypothetical protein phrog_1749 tail assembly chaperone tail -1 13291 13650
ALY08171.1 KT887557_p48 hypothetical protein phrog_16342 unknown function unknown function 1 42687 43100
ALY08174.1 KT887557_p51 hypothetical protein phrog_20457 unknown function unknown function 1 44976 45140
ALY08175.1 KT887557_p52 hypothetical protein phrog_25120 unknown function unknown function 1 45290 45685
ALY08183.1 KT887557_p60 C repressor phrog_36186 unknown function unknown function 1 50932 51201
ALY08165.1 KT887557_p42 NAD-dependent DNA ligase phrog_3989 unknown function unknown function 1 36489 37139
ALY08153.1 KT887557_p30 NinG protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism -1 28203 28844
ALY08191.1 KT887557_p68 hypothetical protein phrog_8538 unknown function unknown function 1 55234 55689
ALY08135.1 KT887557_p12 major tail protein phrog_158 major tail protein tail -1 13660 14181
ALY08179.1 KT887557_p56 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 48152 48598
ALY08161.1 KT887557_p38 hypothetical protein phrog_9797 unknown function unknown function 1 34801 35061
ALY08125.1 KT887557_p2 lipoprotein phrog_3580 unknown function unknown function -1 407 667
ALY08152.1 KT887557_p29 hypothetical protein phrog_3412 unknown function unknown function -1 27293 27874
ALY08164.1 KT887557_p41 repressor phrog_4 transcriptional repressor transcription regulation 1 35596 36459
ALY08137.1 KT887557_p14 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 14624 15118
ALY08169.1 KT887557_p46 hypothetical protein phrog_4433 unknown function unknown function 1 40170 41006
ALY08156.1 KT887557_p33 ATP-dependent Clp protease ATP-binding subunit phrog_12435 protease other -1 30177 30374
ALY08150.1 KT887557_p27 hypothetical protein phrog_198 holin lysis -1 25650 26018
ALY08147.1 KT887557_p24 hypothetical protein phrog_9736 unknown function unknown function -1 24663 25022
ALY08178.1 KT887557_p55 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism 1 47529 48155
ALY08138.1 KT887557_p15 S-adenosyl-L-methionine-dependent methyltransferase phrog_6564 methyltransferase other -1 15111 15728
ALY08148.1 KT887557_p25 hypothetical protein phrog_1046 unknown function unknown function -1 25140 25373
ALY08129.1 KT887557_p6 tail fiber protein phrog_469 tail protein tail -1 6372 9101
ALY08163.1 KT887557_p40 Cro/Cl family transcriptional regulator phrog_35 transcriptional repressor transcription regulation -1 35371 35586
ALY08185.1 KT887557_p62 Lar family protein phrog_3592 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 52016 52369
ALY08143.1 KT887557_p20 portal protein phrog_12 portal protein head and packaging -1 20142 21350
ALY08126.1 KT887557_p3 lysozyme phrog_7 endolysin lysis -1 1029 1463
ALY08181.1 KT887557_p58 hypothetical protein phrog_17089 unknown function unknown function 1 49424 49648
ALY08162.1 KT887557_p39 hypothetical protein phrog_9767 unknown function unknown function -1 34994 35338
ALY08124.1 KT887557_p1 hypothetical protein phrog_3944 unknown function unknown function -1 108 371
ALY08176.1 KT887557_p53 major outer membrane lipoprotein phrog_1376 unknown function unknown function 1 45727 46791
ALY08159.1 KT887557_p36 hypothetical protein phrog_11351 unknown function unknown function -1 33790 33996
ALY08146.1 KT887557_p23 endonuclease phrog_6050 HNH endonuclease DNA, RNA and nucleotide metabolism -1 23848 24018
ALY08128.1 KT887557_p5 structural protein 2 singleton unknown function unknown function -1 3385 5412
ALY08180.1 KT887557_p57 hypothetical protein phrog_12813 unknown function unknown function 1 48662 49261
ALY08144.1 KT887557_p21 terminase family protein phrog_9 terminase large subunit head and packaging -1 21561 23252
ALY08190.1 KT887557_p67 hypothetical protein phrog_4029 unknown function unknown function 1 54366 54917
ALY08158.1 KT887557_p35 replication protein P phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 31075 32904
ALY08140.1 KT887557_p17 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector -1 16872 17192