| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KT887557 |
Definition |
Pseudomonas phage phi1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
57218 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
57.49 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALY08182.1 | KT887557_p59 | HNH endonuclease family protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 50408 | 50929 |
| ALY08155.1 | KT887557_p32 | hypothetical protein | phrog_319 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | -1 | 29346 | 29933 |
| ALY08173.1 | KT887557_p50 | hypothetical protein | phrog_13871 | unknown function | unknown function | 1 | 44480 | 44869 |
| ALY08145.1 | KT887557_p22 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | -1 | 23254 | 23634 |
| ALY08139.1 | KT887557_p16 | head-tail adapter protein | phrog_25 | head closure Hc1 | connector | -1 | 16515 | 16856 |
| ALY08130.1 | KT887557_p7 | protein of unknown function DUF1833 | phrog_396 | minor tail protein | tail | -1 | 9485 | 9847 |
| ALY08141.1 | KT887557_p18 | major capsid protein | phrog_10 | major head protein | head and packaging | -1 | 17936 | 19123 |
| ALY08142.1 | KT887557_p19 | ATP-dependent Clp protease proteolytic subunit | phrog_1684 | head maturation protease | head and packaging | -1 | 19120 | 20010 |
| ALY08167.1 | KT887557_p44 | hypothetical protein | phrog_7788 | unknown function | unknown function | 1 | 39535 | 39741 |
| ALY08160.1 | KT887557_p37 | hypothetical protein | phrog_101 | CII-like transcriptional activator | transcription regulation | -1 | 34193 | 34657 |
| ALY08154.1 | KT887557_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29086 | 29145 |
| ALY08189.1 | KT887557_p66 | hypothetical protein | phrog_24413 | unknown function | unknown function | 1 | 53678 | 53890 |
| ALY08131.1 | KT887557_p8 | alkanesulfonate transport protein | phrog_384 | virion structural protein | head and packaging | -1 | 9960 | 10439 |
| ALY08127.1 | KT887557_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1976 | 3337 |
| ALY08192.1 | KT887557_p69 | site-specific recombinase | phrog_1 | integrase | integration and excision | 1 | 55970 | 57187 |
| ALY08132.1 | KT887557_p9 | tail tape measure protein | phrog_2854 | tail length tape measure protein | tail | -1 | 10436 | 12964 |
| ALY08186.1 | KT887557_p63 | HNH endonuclease family protein | singleton | unknown function | unknown function | 1 | 52489 | 52749 |
| ALY08168.1 | KT887557_p45 | hypothetical protein | phrog_25313 | unknown function | unknown function | 1 | 39885 | 40067 |
| ALY08157.1 | KT887557_p34 | hypothetical protein | phrog_4405 | unknown function | unknown function | -1 | 30450 | 30932 |
| ALY08149.1 | KT887557_p26 | protein of unknown function DUF754 | phrog_217 | holin | lysis | -1 | 25373 | 25657 |
| ALY08170.1 | KT887557_p47 | Ydd | phrog_12644 | unknown function | unknown function | 1 | 41119 | 41763 |
| ALY08184.1 | KT887557_p61 | hypothetical protein | phrog_4887 | unknown function | unknown function | 1 | 51201 | 51482 |
| ALY08136.1 | KT887557_p13 | Flp pilus assembly protein | phrog_78 | tail terminator | connector | -1 | 14256 | 14621 |
| ALY08166.1 | KT887557_p43 | hypothetical protein | phrog_9139 | unknown function | unknown function | 1 | 39318 | 39524 |
| ALY08133.1 | KT887557_p10 | hypothetical protein | phrog_337 | tail protein | tail | -1 | 13013 | 13267 |
| ALY08187.1 | KT887557_p64 | hypothetical protein | phrog_7427 | unknown function | unknown function | 1 | 52794 | 53111 |
| ALY08177.1 | KT887557_p54 | recombination protein bet | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46799 | 47545 |
| ALY08172.1 | KT887557_p49 | hypothetical protein | phrog_24413 | unknown function | unknown function | 1 | 43358 | 43582 |
| ALY08151.1 | KT887557_p28 | hypothetical protein | phrog_32732 | unknown function | unknown function | -1 | 26367 | 26792 |
| ALY08188.1 | KT887557_p65 | hypothetical protein | phrog_5315 | unknown function | unknown function | 1 | 53264 | 53410 |
| ALY08134.1 | KT887557_p11 | hypothetical protein | phrog_1749 | tail assembly chaperone | tail | -1 | 13291 | 13650 |
| ALY08171.1 | KT887557_p48 | hypothetical protein | phrog_16342 | unknown function | unknown function | 1 | 42687 | 43100 |
| ALY08174.1 | KT887557_p51 | hypothetical protein | phrog_20457 | unknown function | unknown function | 1 | 44976 | 45140 |
| ALY08175.1 | KT887557_p52 | hypothetical protein | phrog_25120 | unknown function | unknown function | 1 | 45290 | 45685 |
| ALY08183.1 | KT887557_p60 | C repressor | phrog_36186 | unknown function | unknown function | 1 | 50932 | 51201 |
| ALY08165.1 | KT887557_p42 | NAD-dependent DNA ligase | phrog_3989 | unknown function | unknown function | 1 | 36489 | 37139 |
| ALY08153.1 | KT887557_p30 | NinG protein | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28203 | 28844 |
| ALY08191.1 | KT887557_p68 | hypothetical protein | phrog_8538 | unknown function | unknown function | 1 | 55234 | 55689 |
| ALY08135.1 | KT887557_p12 | major tail protein | phrog_158 | major tail protein | tail | -1 | 13660 | 14181 |
| ALY08179.1 | KT887557_p56 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 48152 | 48598 |
| ALY08161.1 | KT887557_p38 | hypothetical protein | phrog_9797 | unknown function | unknown function | 1 | 34801 | 35061 |
| ALY08125.1 | KT887557_p2 | lipoprotein | phrog_3580 | unknown function | unknown function | -1 | 407 | 667 |
| ALY08152.1 | KT887557_p29 | hypothetical protein | phrog_3412 | unknown function | unknown function | -1 | 27293 | 27874 |
| ALY08164.1 | KT887557_p41 | repressor | phrog_4 | transcriptional repressor | transcription regulation | 1 | 35596 | 36459 |
| ALY08137.1 | KT887557_p14 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 14624 | 15118 |
| ALY08169.1 | KT887557_p46 | hypothetical protein | phrog_4433 | unknown function | unknown function | 1 | 40170 | 41006 |
| ALY08156.1 | KT887557_p33 | ATP-dependent Clp protease ATP-binding subunit | phrog_12435 | protease | other | -1 | 30177 | 30374 |
| ALY08150.1 | KT887557_p27 | hypothetical protein | phrog_198 | holin | lysis | -1 | 25650 | 26018 |
| ALY08147.1 | KT887557_p24 | hypothetical protein | phrog_9736 | unknown function | unknown function | -1 | 24663 | 25022 |
| ALY08178.1 | KT887557_p55 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 47529 | 48155 |
| ALY08138.1 | KT887557_p15 | S-adenosyl-L-methionine-dependent methyltransferase | phrog_6564 | methyltransferase | other | -1 | 15111 | 15728 |
| ALY08148.1 | KT887557_p25 | hypothetical protein | phrog_1046 | unknown function | unknown function | -1 | 25140 | 25373 |
| ALY08129.1 | KT887557_p6 | tail fiber protein | phrog_469 | tail protein | tail | -1 | 6372 | 9101 |
| ALY08163.1 | KT887557_p40 | Cro/Cl family transcriptional regulator | phrog_35 | transcriptional repressor | transcription regulation | -1 | 35371 | 35586 |
| ALY08185.1 | KT887557_p62 | Lar family protein | phrog_3592 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 52016 | 52369 |
| ALY08143.1 | KT887557_p20 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 20142 | 21350 |
| ALY08126.1 | KT887557_p3 | lysozyme | phrog_7 | endolysin | lysis | -1 | 1029 | 1463 |
| ALY08181.1 | KT887557_p58 | hypothetical protein | phrog_17089 | unknown function | unknown function | 1 | 49424 | 49648 |
| ALY08162.1 | KT887557_p39 | hypothetical protein | phrog_9767 | unknown function | unknown function | -1 | 34994 | 35338 |
| ALY08124.1 | KT887557_p1 | hypothetical protein | phrog_3944 | unknown function | unknown function | -1 | 108 | 371 |
| ALY08176.1 | KT887557_p53 | major outer membrane lipoprotein | phrog_1376 | unknown function | unknown function | 1 | 45727 | 46791 |
| ALY08159.1 | KT887557_p36 | hypothetical protein | phrog_11351 | unknown function | unknown function | -1 | 33790 | 33996 |
| ALY08146.1 | KT887557_p23 | endonuclease | phrog_6050 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23848 | 24018 |
| ALY08128.1 | KT887557_p5 | structural protein 2 | singleton | unknown function | unknown function | -1 | 3385 | 5412 |
| ALY08180.1 | KT887557_p57 | hypothetical protein | phrog_12813 | unknown function | unknown function | 1 | 48662 | 49261 |
| ALY08144.1 | KT887557_p21 | terminase family protein | phrog_9 | terminase large subunit | head and packaging | -1 | 21561 | 23252 |
| ALY08190.1 | KT887557_p67 | hypothetical protein | phrog_4029 | unknown function | unknown function | 1 | 54366 | 54917 |
| ALY08158.1 | KT887557_p35 | replication protein P | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | -1 | 31075 | 32904 |
| ALY08140.1 | KT887557_p17 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | -1 | 16872 | 17192 |