Genomic map of Salmonella phage fSE1C (KT962832)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KT962832
Definition
Salmonella phage fSE1C, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; Salmonella virus f18SE; Salmonella phage f18SE.
DB of origin
PVOG
Length
41720
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
49.73
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ALN97440.1 KT962832_p1 DNA-binding protein phrog_63 anti-repressor Ant transcription regulation 1 3 638
ALN97465.1 KT962832_p26 hypothetical protein phrog_2359 holin lysis -1 15679 16005
ALN97443.1 KT962832_p4 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 2255 2650
ALN97490.1 KT962832_p51 hypothetical protein phrog_313 Tail assembly chaperone tail -1 39403 39819
ALN97460.1 KT962832_p21 hypothetical protein phrog_1402 unknown function unknown function -1 14222 14401
ALN97477.1 KT962832_p38 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 24168 24794
ALN97455.1 KT962832_p16 hypothetical protein phrog_6095 amidase lysis 1 9393 10043
ALN97470.1 KT962832_p31 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 18671 18856
ALN97469.1 KT962832_p30 hypothetical protein phrog_625 unknown function unknown function -1 17598 17873
ALN97474.1 KT962832_p35 hypothetical protein phrog_3127 unknown function unknown function 1 21696 22220
ALN97478.1 KT962832_p39 DNA polymerase family A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 24852 27950
ALN97480.1 KT962832_p41 hypothetical protein phrog_4879 unknown function unknown function 1 28356 28547
ALN97467.1 KT962832_p28 hypothetical protein phrog_4947 unknown function unknown function -1 16480 16851
ALN97484.1 KT962832_p45 tailspike protein phrog_1819 tail spike protein tail -1 30720 32750
ALN97441.1 KT962832_p2 tail protein phrog_290 minor tail protein tail -1 667 1836
ALN97466.1 KT962832_p27 hypothetical protein phrog_1040 peptidase HslV family other -1 16040 16474
ALN97475.1 KT962832_p36 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 22289 22810
ALN97481.1 KT962832_p42 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 28544 29968
ALN97461.1 KT962832_p22 hypothetical protein phrog_4684 unknown function unknown function -1 14398 14553
ALN97450.1 KT962832_p11 major capsid protein phrog_247 major head protein head and packaging -1 5059 6108
ALN97452.1 KT962832_p13 hypothetical protein phrog_2536 Rz-like spanin lysis -1 7007 7393
ALN97492.1 KT962832_p53 hypothetical protein phrog_2452 unknown function unknown function 1 41363 41593
ALN97463.1 KT962832_p24 lysozyme phrog_7 endolysin lysis -1 14921 15409
ALN97486.1 KT962832_p47 hypothetical protein phrog_396 minor tail protein tail -1 35698 36213
ALN97451.1 KT962832_p12 scaffold protein phrog_206 head scaffolding protein head and packaging -1 6112 6813
ALN97485.1 KT962832_p46 tail fiber protein phrog_469 tail protein tail -1 32787 35345
ALN97482.1 KT962832_p43 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 29965 30450
ALN97476.1 KT962832_p37 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 22794 24086
ALN97445.1 KT962832_p6 hypothetical protein phrog_3614 unknown function unknown function -1 3006 3611
ALN97453.1 KT962832_p14 hypothetical protein phrog_3945 Hoc-like head decoration head and packaging -1 7712 8170
ALN97458.1 KT962832_p19 terminase small subunit protein phrog_3064 terminase head and packaging -1 12816 13361
ALN97456.1 KT962832_p17 portal protein phrog_145 portal protein head and packaging -1 10076 11542
ALN97479.1 KT962832_p40 restriction endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 28037 28324
ALN97459.1 KT962832_p20 hypothetical protein phrog_10134 unknown function unknown function -1 13456 13686
ALN97487.1 KT962832_p48 hypothetical protein phrog_384 virion structural protein head and packaging -1 36210 36710
ALN97444.1 KT962832_p5 hypothetical protein phrog_161 head closure Hc1 connector -1 2647 2928
ALN97468.1 KT962832_p29 EaA protein phrog_924 unknown function unknown function -1 17410 17601
ALN97472.1 KT962832_p33 primase-helicase phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 19143 21329
ALN97464.1 KT962832_p25 holin-like class I phrog_2508 holin lysis -1 15390 15677
ALN97483.1 KT962832_p44 hypothetical protein phrog_5915 unknown function unknown function 1 30447 30602
ALN97471.1 KT962832_p32 uvsX-like protein phrog_5169 unknown function unknown function 1 18853 19086
ALN97447.1 KT962832_p8 hypothetical protein phrog_4451 unknown function unknown function -1 4127 4315
ALN97488.1 KT962832_p49 tape measure protein phrog_1538 tail length tape measure protein tail -1 36712 39045
ALN97491.1 KT962832_p52 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 40236 41366
ALN97462.1 KT962832_p23 hypothetical protein phrog_2180 unknown function unknown function -1 14550 14735
ALN97473.1 KT962832_p34 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 21344 21562
ALN97448.1 KT962832_p9 major tail protein phrog_4069 Hoc-like head decoration head and packaging -1 4352 4702
ALN97449.1 KT962832_p10 head protein phrog_4366 head fiber protein head and packaging -1 4714 4998
ALN97446.1 KT962832_p7 hypothetical protein phrog_477 head-tail adaptor Ad1 connector -1 3614 4123
ALN97442.1 KT962832_p3 hypothetical protein phrog_179 tail terminator connector -1 1836 2255
ALN97489.1 KT962832_p50 hypothetical protein phrog_4557 unknown function unknown function -1 39038 39397
ALN97454.1 KT962832_p15 head morphogenesis protein phrog_241 head morphogenesis head and packaging -1 8173 9216
ALN97457.1 KT962832_p18 terminase large subunit phrog_2 terminase large subunit head and packaging -1 11555 12826