| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KT962832 |
Definition |
Salmonella phage fSE1C, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; Salmonella virus f18SE; Salmonella phage f18SE. |
DB of origin |
PVOG |
Length |
41720 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
49.73 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALN97440.1 | KT962832_p1 | DNA-binding protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 3 | 638 |
| ALN97465.1 | KT962832_p26 | hypothetical protein | phrog_2359 | holin | lysis | -1 | 15679 | 16005 |
| ALN97443.1 | KT962832_p4 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 2255 | 2650 |
| ALN97490.1 | KT962832_p51 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 39403 | 39819 |
| ALN97460.1 | KT962832_p21 | hypothetical protein | phrog_1402 | unknown function | unknown function | -1 | 14222 | 14401 |
| ALN97477.1 | KT962832_p38 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 24168 | 24794 |
| ALN97455.1 | KT962832_p16 | hypothetical protein | phrog_6095 | amidase | lysis | 1 | 9393 | 10043 |
| ALN97470.1 | KT962832_p31 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 18671 | 18856 |
| ALN97469.1 | KT962832_p30 | hypothetical protein | phrog_625 | unknown function | unknown function | -1 | 17598 | 17873 |
| ALN97474.1 | KT962832_p35 | hypothetical protein | phrog_3127 | unknown function | unknown function | 1 | 21696 | 22220 |
| ALN97478.1 | KT962832_p39 | DNA polymerase family A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 24852 | 27950 |
| ALN97480.1 | KT962832_p41 | hypothetical protein | phrog_4879 | unknown function | unknown function | 1 | 28356 | 28547 |
| ALN97467.1 | KT962832_p28 | hypothetical protein | phrog_4947 | unknown function | unknown function | -1 | 16480 | 16851 |
| ALN97484.1 | KT962832_p45 | tailspike protein | phrog_1819 | tail spike protein | tail | -1 | 30720 | 32750 |
| ALN97441.1 | KT962832_p2 | tail protein | phrog_290 | minor tail protein | tail | -1 | 667 | 1836 |
| ALN97466.1 | KT962832_p27 | hypothetical protein | phrog_1040 | peptidase HslV family | other | -1 | 16040 | 16474 |
| ALN97475.1 | KT962832_p36 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22289 | 22810 |
| ALN97481.1 | KT962832_p42 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 28544 | 29968 |
| ALN97461.1 | KT962832_p22 | hypothetical protein | phrog_4684 | unknown function | unknown function | -1 | 14398 | 14553 |
| ALN97450.1 | KT962832_p11 | major capsid protein | phrog_247 | major head protein | head and packaging | -1 | 5059 | 6108 |
| ALN97452.1 | KT962832_p13 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | -1 | 7007 | 7393 |
| ALN97492.1 | KT962832_p53 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 41363 | 41593 |
| ALN97463.1 | KT962832_p24 | lysozyme | phrog_7 | endolysin | lysis | -1 | 14921 | 15409 |
| ALN97486.1 | KT962832_p47 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 35698 | 36213 |
| ALN97451.1 | KT962832_p12 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 6112 | 6813 |
| ALN97485.1 | KT962832_p46 | tail fiber protein | phrog_469 | tail protein | tail | -1 | 32787 | 35345 |
| ALN97482.1 | KT962832_p43 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29965 | 30450 |
| ALN97476.1 | KT962832_p37 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 22794 | 24086 |
| ALN97445.1 | KT962832_p6 | hypothetical protein | phrog_3614 | unknown function | unknown function | -1 | 3006 | 3611 |
| ALN97453.1 | KT962832_p14 | hypothetical protein | phrog_3945 | Hoc-like head decoration | head and packaging | -1 | 7712 | 8170 |
| ALN97458.1 | KT962832_p19 | terminase small subunit protein | phrog_3064 | terminase | head and packaging | -1 | 12816 | 13361 |
| ALN97456.1 | KT962832_p17 | portal protein | phrog_145 | portal protein | head and packaging | -1 | 10076 | 11542 |
| ALN97479.1 | KT962832_p40 | restriction endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28037 | 28324 |
| ALN97459.1 | KT962832_p20 | hypothetical protein | phrog_10134 | unknown function | unknown function | -1 | 13456 | 13686 |
| ALN97487.1 | KT962832_p48 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 36210 | 36710 |
| ALN97444.1 | KT962832_p5 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 2647 | 2928 |
| ALN97468.1 | KT962832_p29 | EaA protein | phrog_924 | unknown function | unknown function | -1 | 17410 | 17601 |
| ALN97472.1 | KT962832_p33 | primase-helicase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 19143 | 21329 |
| ALN97464.1 | KT962832_p25 | holin-like class I | phrog_2508 | holin | lysis | -1 | 15390 | 15677 |
| ALN97483.1 | KT962832_p44 | hypothetical protein | phrog_5915 | unknown function | unknown function | 1 | 30447 | 30602 |
| ALN97471.1 | KT962832_p32 | uvsX-like protein | phrog_5169 | unknown function | unknown function | 1 | 18853 | 19086 |
| ALN97447.1 | KT962832_p8 | hypothetical protein | phrog_4451 | unknown function | unknown function | -1 | 4127 | 4315 |
| ALN97488.1 | KT962832_p49 | tape measure protein | phrog_1538 | tail length tape measure protein | tail | -1 | 36712 | 39045 |
| ALN97491.1 | KT962832_p52 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40236 | 41366 |
| ALN97462.1 | KT962832_p23 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 14550 | 14735 |
| ALN97473.1 | KT962832_p34 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 21344 | 21562 |
| ALN97448.1 | KT962832_p9 | major tail protein | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 4352 | 4702 |
| ALN97449.1 | KT962832_p10 | head protein | phrog_4366 | head fiber protein | head and packaging | -1 | 4714 | 4998 |
| ALN97446.1 | KT962832_p7 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 3614 | 4123 |
| ALN97442.1 | KT962832_p3 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 1836 | 2255 |
| ALN97489.1 | KT962832_p50 | hypothetical protein | phrog_4557 | unknown function | unknown function | -1 | 39038 | 39397 |
| ALN97454.1 | KT962832_p15 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | -1 | 8173 | 9216 |
| ALN97457.1 | KT962832_p18 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 11555 | 12826 |