| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KT968832 |
Definition |
Pseudomonas phage YMC11/11/R1836, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; Pseudomonas virus PA1KOR. |
DB of origin |
PVOG |
Length |
37714 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
64.24 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALP47988.1 | KT968832_p54 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 32820 | 33059 |
| ALP47990.1 | KT968832_p56 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 33264 | 35471 |
| ALP47941.1 | KT968832_p7 | DNA transposition protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 4770 | 5522 |
| ALP47967.1 | KT968832_p33 | hypothetical protein | phrog_17406 | unknown function | unknown function | 1 | 18114 | 18278 |
| ALP47971.1 | KT968832_p37 | hypothetical protein | phrog_10291 | unknown function | unknown function | -1 | 19280 | 19396 |
| ALP47950.1 | KT968832_p16 | hypothetical protein | phrog_3223 | unknown function | unknown function | 1 | 8464 | 8670 |
| ALP47944.1 | KT968832_p10 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 6267 | 6680 |
| ALP47958.1 | KT968832_p24 | hypothetical protein | phrog_4057 | unknown function | unknown function | 1 | 11430 | 11672 |
| ALP47976.1 | KT968832_p42 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 22194 | 22370 |
| ALP47952.1 | KT968832_p18 | hypothetical protein | phrog_4093 | unknown function | unknown function | 1 | 9013 | 9309 |
| ALP47936.1 | KT968832_p2 | Ner-like protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1167 | 1520 |
| ALP47939.1 | KT968832_p5 | hypothetical protein | phrog_4468 | unknown function | unknown function | 1 | 2436 | 2690 |
| ALP47935.1 | KT968832_p1 | c repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 304 | 1026 |
| ALP47980.1 | KT968832_p46 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 23459 | 24229 |
| ALP47959.1 | KT968832_p25 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 11669 | 12070 |
| ALP47977.1 | KT968832_p43 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 22367 | 22783 |
| ALP47984.1 | KT968832_p50 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28416 | 29372 |
| ALP47966.1 | KT968832_p32 | hypothetical protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 17534 | 18001 |
| ALP47937.1 | KT968832_p3 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1523 | 1957 |
| ALP47948.1 | KT968832_p14 | hypothetical protein | phrog_4367 | unknown function | unknown function | 1 | 7870 | 8178 |
| ALP47947.1 | KT968832_p13 | host nuclease inhibitor protein | phrog_6755 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7491 | 7868 |
| ALP47953.1 | KT968832_p19 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 9306 | 9713 |
| ALP47946.1 | KT968832_p12 | hypothetical protein | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6971 | 7489 |
| ALP47991.1 | KT968832_p57 | hypothetical protein | phrog_2875 | virion structural protein | head and packaging | 1 | 35480 | 36619 |
| ALP47981.1 | KT968832_p47 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 24233 | 24718 |
| ALP47973.1 | KT968832_p39 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | 1 | 20484 | 20882 |
| ALP47972.1 | KT968832_p38 | hypothetical protein | phrog_328 | head maturation protease | head and packaging | 1 | 19368 | 20474 |
| ALP47951.1 | KT968832_p17 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 8673 | 8942 |
| ALP47989.1 | KT968832_p55 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 33056 | 33274 |
| ALP47954.1 | KT968832_p20 | hypothetical protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 9739 | 10149 |
| ALP47979.1 | KT968832_p45 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 23247 | 23426 |
| ALP47993.1 | KT968832_p59 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 36988 | 37212 |
| ALP47985.1 | KT968832_p51 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 29374 | 30297 |
| ALP47943.1 | KT968832_p9 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 6151 | 6267 |
| ALP47968.1 | KT968832_p34 | hypothetical protein | phrog_9439 | unknown function | unknown function | 1 | 18275 | 18694 |
| ALP47956.1 | KT968832_p22 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 10592 | 11014 |
| ALP47975.1 | KT968832_p41 | hypothetical protein | phrog_7976 | unknown function | unknown function | 1 | 21830 | 22132 |
| ALP47942.1 | KT968832_p8 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 5519 | 6166 |
| ALP47945.1 | KT968832_p11 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 6661 | 6954 |
| ALP47986.1 | KT968832_p52 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 30297 | 32000 |
| ALP47961.1 | KT968832_p27 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 12181 | 12369 |
| ALP47965.1 | KT968832_p31 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 16248 | 17534 |
| ALP47969.1 | KT968832_p35 | hypothetical protein | phrog_26475 | unknown function | unknown function | 1 | 18775 | 18930 |
| ALP47949.1 | KT968832_p15 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 8181 | 8462 |
| ALP47974.1 | KT968832_p40 | major head subunit protein | phrog_371 | major head protein | head and packaging | 1 | 20910 | 21818 |
| ALP47983.1 | KT968832_p49 | tail component protein | phrog_24 | tail length tape measure protein | tail | 1 | 24849 | 28409 |
| ALP47938.1 | KT968832_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1970 | 2437 |
| ALP47960.1 | KT968832_p26 | hypothetical protein | phrog_8661 | unknown function | unknown function | 1 | 12057 | 12176 |
| ALP47940.1 | KT968832_p6 | transposase A | phrog_310 | transposase | integration and excision | 1 | 2698 | 4755 |
| ALP47963.1 | KT968832_p29 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 12875 | 14650 |
| ALP47957.1 | KT968832_p23 | structural protein | phrog_873 | endolysin | head and packaging | 1 | 11014 | 11430 |
| ALP47978.1 | KT968832_p44 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 22780 | 23259 |
| ALP47955.1 | KT968832_p21 | hypothetical protein | phrog_3648 | unknown function | unknown function | 1 | 10252 | 10599 |
| ALP47987.1 | KT968832_p53 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 31990 | 32811 |
| ALP47992.1 | KT968832_p58 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 36640 | 36909 |
| ALP47964.1 | KT968832_p30 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 14662 | 16248 |
| ALP47970.1 | KT968832_p36 | hypothetical protein | phrog_3865 | unknown function | unknown function | 1 | 18927 | 19148 |
| ALP47962.1 | KT968832_p28 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12378 | 12878 |
| ALP47982.1 | KT968832_p48 | hypothetical protein | phrog_10839 | unknown function | unknown function | 1 | 24718 | 24846 |