Genomic map of Pseudomonas phage YMC11/11/R1836 (KT968832)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KT968832
Definition
Pseudomonas phage YMC11/11/R1836, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; Pseudomonas virus PA1KOR.
DB of origin
PVOG
Length
37714
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
64.24
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ALP47988.1 KT968832_p54 hypothetical protein phrog_1180 tail assembly chaperone tail 1 32820 33059
ALP47990.1 KT968832_p56 hypothetical protein phrog_1101 tail protein tail 1 33264 35471
ALP47941.1 KT968832_p7 DNA transposition protein phrog_296 DNA transposition protein integration and excision 1 4770 5522
ALP47967.1 KT968832_p33 hypothetical protein phrog_17406 unknown function unknown function 1 18114 18278
ALP47971.1 KT968832_p37 hypothetical protein phrog_10291 unknown function unknown function -1 19280 19396
ALP47950.1 KT968832_p16 hypothetical protein phrog_3223 unknown function unknown function 1 8464 8670
ALP47944.1 KT968832_p10 hypothetical protein phrog_2119 unknown function unknown function 1 6267 6680
ALP47958.1 KT968832_p24 hypothetical protein phrog_4057 unknown function unknown function 1 11430 11672
ALP47976.1 KT968832_p42 hypothetical protein phrog_3376 unknown function unknown function 1 22194 22370
ALP47952.1 KT968832_p18 hypothetical protein phrog_4093 unknown function unknown function 1 9013 9309
ALP47936.1 KT968832_p2 Ner-like protein phrog_769 transcriptional repressor transcription regulation 1 1167 1520
ALP47939.1 KT968832_p5 hypothetical protein phrog_4468 unknown function unknown function 1 2436 2690
ALP47935.1 KT968832_p1 c repressor phrog_4 transcriptional repressor transcription regulation -1 304 1026
ALP47980.1 KT968832_p46 hypothetical protein phrog_807 major tail protein with Ig-like domain tail 1 23459 24229
ALP47959.1 KT968832_p25 hypothetical protein phrog_2975 Rz-like spanin lysis 1 11669 12070
ALP47977.1 KT968832_p43 hypothetical protein phrog_195 head-tail adaptor connector 1 22367 22783
ALP47984.1 KT968832_p50 hypothetical protein phrog_687 structural protein head and packaging 1 28416 29372
ALP47966.1 KT968832_p32 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 17534 18001
ALP47937.1 KT968832_p3 hypothetical protein phrog_2345 transcriptional regulator transcription regulation 1 1523 1957
ALP47948.1 KT968832_p14 hypothetical protein phrog_4367 unknown function unknown function 1 7870 8178
ALP47947.1 KT968832_p13 host nuclease inhibitor protein phrog_6755 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 7491 7868
ALP47953.1 KT968832_p19 hypothetical protein phrog_286 unknown function unknown function 1 9306 9713
ALP47946.1 KT968832_p12 hypothetical protein phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6971 7489
ALP47991.1 KT968832_p57 hypothetical protein phrog_2875 virion structural protein head and packaging 1 35480 36619
ALP47981.1 KT968832_p47 hypothetical protein phrog_1442 tail assembly chaperone tail 1 24233 24718
ALP47973.1 KT968832_p39 hypothetical protein phrog_1731 virion structural protein head and packaging 1 20484 20882
ALP47972.1 KT968832_p38 hypothetical protein phrog_328 head maturation protease head and packaging 1 19368 20474
ALP47951.1 KT968832_p17 hypothetical protein phrog_3652 unknown function unknown function 1 8673 8942
ALP47989.1 KT968832_p55 hypothetical protein phrog_1196 tail assembly chaperone tail 1 33056 33274
ALP47954.1 KT968832_p20 hypothetical protein phrog_836 late transcriptional activator transcription regulation 1 9739 10149
ALP47979.1 KT968832_p45 hypothetical protein phrog_3129 unknown function unknown function 1 23247 23426
ALP47993.1 KT968832_p59 hypothetical protein phrog_2623 unknown function unknown function 1 36988 37212
ALP47985.1 KT968832_p51 hypothetical protein phrog_687 structural protein head and packaging 1 29374 30297
ALP47943.1 KT968832_p9 hypothetical protein phrog_3765 unknown function unknown function 1 6151 6267
ALP47968.1 KT968832_p34 hypothetical protein phrog_9439 unknown function unknown function 1 18275 18694
ALP47956.1 KT968832_p22 hypothetical protein phrog_1024 unknown function unknown function 1 10592 11014
ALP47975.1 KT968832_p41 hypothetical protein phrog_7976 unknown function unknown function 1 21830 22132
ALP47942.1 KT968832_p8 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 5519 6166
ALP47945.1 KT968832_p11 hypothetical protein phrog_2043 unknown function unknown function 1 6661 6954
ALP47986.1 KT968832_p52 hypothetical protein phrog_1082 tail assembly protein tail 1 30297 32000
ALP47961.1 KT968832_p27 hypothetical protein phrog_1103 unknown function unknown function 1 12181 12369
ALP47965.1 KT968832_p31 virion morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 16248 17534
ALP47969.1 KT968832_p35 hypothetical protein phrog_26475 unknown function unknown function 1 18775 18930
ALP47949.1 KT968832_p15 hypothetical protein phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 8181 8462
ALP47974.1 KT968832_p40 major head subunit protein phrog_371 major head protein head and packaging 1 20910 21818
ALP47983.1 KT968832_p49 tail component protein phrog_24 tail length tape measure protein tail 1 24849 28409
ALP47938.1 KT968832_p4 hypothetical protein singleton unknown function unknown function -1 1970 2437
ALP47960.1 KT968832_p26 hypothetical protein phrog_8661 unknown function unknown function 1 12057 12176
ALP47940.1 KT968832_p6 transposase A phrog_310 transposase integration and excision 1 2698 4755
ALP47963.1 KT968832_p29 hypothetical protein phrog_38 terminase large subunit head and packaging 1 12875 14650
ALP47957.1 KT968832_p23 structural protein phrog_873 endolysin head and packaging 1 11014 11430
ALP47978.1 KT968832_p44 hypothetical protein phrog_209 portal protein head and packaging 1 22780 23259
ALP47955.1 KT968832_p21 hypothetical protein phrog_3648 unknown function unknown function 1 10252 10599
ALP47987.1 KT968832_p53 hypothetical protein phrog_778 tail assembly protein tail 1 31990 32811
ALP47992.1 KT968832_p58 hypothetical protein phrog_2432 unknown function unknown function 1 36640 36909
ALP47964.1 KT968832_p30 portal protein phrog_113 portal protein head and packaging 1 14662 16248
ALP47970.1 KT968832_p36 hypothetical protein phrog_3865 unknown function unknown function 1 18927 19148
ALP47962.1 KT968832_p28 hypothetical protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 12378 12878
ALP47982.1 KT968832_p48 hypothetical protein phrog_10839 unknown function unknown function 1 24718 24846