| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KU052488 |
Definition |
Lactobacillus phage SA-C12, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tybeckvirinae; Lenusvirus; Lactobacillus virus SAC12. |
DB of origin |
NUCCORE |
Length |
79099 |
Host Name |
Lactobacillus brevis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
121 |
%GC |
37.49 |
Number of singletons |
17 |
Number of paralogs |
6 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALY06840.1 | KU052488_p18 | structural protein | phrog_1217 | tail protein | tail | -1 | 22367 | 22744 |
| ALY06886.1 | KU052488_p65 | hypothetical protein | phrog_22698 | unknown function | unknown function | -1 | 46792 | 47229 |
| ALY06842.1 | KU052488_p20 | head-tail joining protein | phrog_25 | head closure Hc1 | connector | -1 | 23189 | 23611 |
| ALY06935.1 | KU052488_p114 | hypothetical protein | phrog_25186 | unknown function | unknown function | 1 | 73120 | 73350 |
| ALY06924.1 | KU052488_p103 | hypothetical protein | phrog_918 | unknown function | unknown function | 1 | 67102 | 67347 |
| ALY06907.1 | KU052488_p86 | hypothetical protein | phrog_24710 | unknown function | unknown function | -1 | 58291 | 58581 |
| ALY06925.1 | KU052488_p104 | hypothetical protein | phrog_11757 | unknown function | unknown function | 1 | 67415 | 67795 |
| ALY06848.1 | KU052488_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30017 | 30187 |
| ALY06851.1 | KU052488_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30814 | 31008 |
| ALY06881.1 | KU052488_p60 | hypothetical protein | phrog_17627 | unknown function | unknown function | -1 | 44260 | 44496 |
| ALY06905.1 | KU052488_p84 | hypothetical protein | phrog_26623 | unknown function | unknown function | -1 | 57607 | 58002 |
| ALY06826.1 | KU052488_p4 | holin | phrog_13404 | holin | lysis | -1 | 2153 | 2554 |
| ALY06936.1 | KU052488_p115 | hypothetical protein | phrog_22425 | unknown function | unknown function | 1 | 73331 | 73570 |
| ALY06930.1 | KU052488_p109 | lysozyme | phrog_14545 | unknown function | unknown function | 1 | 70201 | 70524 |
| ALY06857.1 | KU052488_p35 | hypothetical protein | phrog_18814 | unknown function | unknown function | 1 | 33553 | 33732 |
| ALY06877.1 | KU052488_p56 | hypothetical protein | phrog_3784 | unknown function | unknown function | -1 | 42517 | 42948 |
| ALY06834.1 | KU052488_p12 | minor structural protein | phrog_4798 | tail protein | tail | -1 | 11034 | 13418 |
| ALY06897.1 | KU052488_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50921 | 51097 |
| ALY06858.1 | KU052488_p36 | hypothetical protein | phrog_9246 | unknown function | unknown function | 1 | 33744 | 34097 |
| ALY06933.1 | KU052488_p112 | hypothetical protein | phrog_26567 | unknown function | unknown function | 1 | 71848 | 72114 |
| ALY06869.1 | KU052488_p48 | hypothetical protein | phrog_16248 | unknown function | unknown function | -1 | 39274 | 39528 |
| ALY06883.1 | KU052488_p62 | hypothetical protein | phrog_25564 | unknown function | unknown function | -1 | 45148 | 45396 |
| ALY06838.1 | KU052488_p16 | tail assembly chaperone | phrog_1346 | tail protein | tail | -1 | 21239 | 21649 |
| ALY06831.1 | KU052488_p9 | hypothetical protein | phrog_1401 | unknown function | unknown function | -1 | 5907 | 6329 |
| ALY06926.1 | KU052488_p105 | hypothetical protein | phrog_19275 | unknown function | unknown function | 1 | 67797 | 68129 |
| ALY06860.1 | KU052488_p38 | NAD-dependent DNA ligase Zn finger domain protein | phrog_1494 | unknown function | unknown function | 1 | 34576 | 34788 |
| ALY06891.1 | KU052488_p70 | hypothetical protein | phrog_1048 | unknown function | unknown function | -1 | 48890 | 49168 |
| ALY06937.1 | KU052488_p116 | hypothetical protein | phrog_22812 | unknown function | unknown function | 1 | 73614 | 73910 |
| ALY06854.1 | KU052488_p32 | hypothetical protein | phrog_26511 | unknown function | unknown function | -1 | 32282 | 32557 |
| ALY06835.1 | KU052488_p13 | minor structural protein | phrog_202 | distal tail protein Dit | tail | -1 | 13458 | 15242 |
| ALY06892.1 | KU052488_p71 | hypothetical protein | phrog_26175 | unknown function | unknown function | -1 | 49362 | 49691 |
| ALY06910.1 | KU052488_p89 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59621 | 60259 |
| ALY06824.1 | KU052488_p2 | hypothetical protein | phrog_13351 | unknown function | unknown function | -1 | 866 | 1111 |
| ALY06916.1 | KU052488_p95 | SSB protein | phrog_2367 | unknown function | unknown function | 1 | 61963 | 62931 |
| ALY06837.1 | KU052488_p15 | metallo-peptidase family M12B protein | phrog_36529 | unknown function | unknown function | -1 | 21034 | 21300 |
| ALY06865.1 | KU052488_p44 | hypothetical protein | phrog_28448 | unknown function | unknown function | -1 | 37429 | 37815 |
| ALY06828.1 | KU052488_p6 | glycosylhydrlase LysM domain protein | phrog_291 | endolysin | lysis | -1 | 2840 | 4225 |
| ALY06845.1 | KU052488_p23 | major capsid protein | phrog_13042 | major head protein | head and packaging | -1 | 24521 | 26710 |
| ALY06888.1 | KU052488_p67 | deoxyribonuclease NucA/NucB | phrog_4019 | unknown function | unknown function | -1 | 47544 | 47870 |
| ALY06932.1 | KU052488_p111 | hypothetical protein | phrog_4602 | transglycosylase | other | 1 | 71159 | 71764 |
| ALY06870.1 | KU052488_p49 | hypothetical protein | phrog_27864 | unknown function | unknown function | -1 | 39560 | 39895 |
| ALY06847.1 | KU052488_p25 | terminase | phrog_9 | terminase large subunit | head and packaging | -1 | 28275 | 30023 |
| ALY06871.1 | KU052488_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40081 | 40335 |
| ALY06912.1 | KU052488_p91 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60569 | 60916 |
| ALY06889.1 | KU052488_p68 | hypothetical protein | phrog_98 | unknown function | unknown function | -1 | 47872 | 48264 |
| ALY06890.1 | KU052488_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48517 | 48801 |
| ALY06887.1 | KU052488_p66 | hypothetical protein | phrog_17195 | unknown function | unknown function | -1 | 47319 | 47516 |
| ALY06929.1 | KU052488_p108 | MazF family toxin-antitoxin system protein | phrog_1936 | MazF-like growth inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 69839 | 70204 |
| ALY06903.1 | KU052488_p82 | hypothetical protein | phrog_13292 | unknown function | unknown function | -1 | 56971 | 57171 |
| ALY06855.1 | KU052488_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32652 | 32915 |
| ALY06856.1 | KU052488_p34 | hypothetical protein | phrog_13887 | unknown function | unknown function | 1 | 32890 | 33510 |
| ALY06849.1 | KU052488_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30156 | 30428 |
| ALY06829.1 | KU052488_p7 | tail protein CHO binding protein | phrog_5499 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | -1 | 4320 | 4859 |
| ALY06913.1 | KU052488_p92 | hypothetical protein | phrog_15790 | unknown function | unknown function | 1 | 60897 | 61139 |
| ALY06833.1 | KU052488_p11 | tail fiber protein | phrog_7660 | tail fiber protein | tail | -1 | 6567 | 11006 |
| ALY06830.1 | KU052488_p8 | hypothetical protein | phrog_4440 | tail fiber protein | tail | -1 | 4865 | 5890 |
| ALY06832.1 | KU052488_p10 | hypothetical protein | phrog_11075 | unknown function | unknown function | -1 | 6344 | 6574 |
| ALY06941.1 | KU052488_p120 | DNA polymerase III alpha subunit | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 74927 | 77530 |
| ALY06879.1 | KU052488_p58 | hypothetical protein | phrog_419 | unknown function | unknown function | -1 | 43680 | 44066 |
| ALY06911.1 | KU052488_p90 | hypothetical protein | phrog_26955 | unknown function | unknown function | 1 | 60296 | 60697 |
| ALY06825.1 | KU052488_p3 | site-specific recombinase phage integrase | phrog_1 | integrase | integration and excision | -1 | 1122 | 2096 |
| ALY06864.1 | KU052488_p43 | hypothetical protein | phrog_27074 | unknown function | unknown function | -1 | 36961 | 37416 |
| ALY06901.1 | KU052488_p80 | hypothetical protein | phrog_4680 | unknown function | unknown function | -1 | 55546 | 56181 |
| ALY06861.1 | KU052488_p40 | NADH dehydrogenase domain protein | phrog_24500 | unknown function | unknown function | 1 | 34983 | 35216 |
| ALY06843.1 | KU052488_p21 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | -1 | 23624 | 23917 |
| ALY06918.1 | KU052488_p97 | hypothetical protein | phrog_23339 | unknown function | unknown function | 1 | 64015 | 64218 |
| ALY06902.1 | KU052488_p81 | deoxynucleoside kinase | phrog_761 | thymidylate kinase | other | -1 | 56267 | 56971 |
| ALY06876.1 | KU052488_p55 | hypothetical protein | phrog_15366 | unknown function | unknown function | -1 | 41889 | 42464 |
| ALY06895.1 | KU052488_p74 | pseudomurein endo-isopeptidase | phrog_7591 | unknown function | unknown function | -1 | 50165 | 50446 |
| ALY06850.1 | KU052488_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30611 | 30787 |
| ALY06872.1 | KU052488_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40503 | 40649 |
| ALY06841.1 | KU052488_p19 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 22744 | 23205 |
| ALY06882.1 | KU052488_p61 | hypothetical protein | phrog_22959 | unknown function | unknown function | -1 | 44447 | 44767 |
| ALY06906.1 | KU052488_p85 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58014 | 58397 |
| ALY06900.1 | KU052488_p79 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 53964 | 55568 |
| ALY06915.1 | KU052488_p94 | hypothetical protein | phrog_14233 | unknown function | unknown function | 1 | 61564 | 61896 |
| ALY06943.1 | KU052488_p39 | hypothetical protein | phrog_1494 | unknown function | unknown function | 1 | 34785 | 34973 |
| ALY06931.1 | KU052488_p110 | hypothetical protein | phrog_5083 | unknown function | unknown function | 1 | 70527 | 71075 |
| ALY06852.1 | KU052488_p30 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | -1 | 31072 | 31575 |
| ALY06921.1 | KU052488_p100 | nicotinamide mononucleotide transporter | phrog_1880 | PnuC-like nicotinamide mononucleotide transport | moron, auxiliary metabolic gene and host takeover | 1 | 65650 | 66414 |
| ALY06875.1 | KU052488_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41615 | 41746 |
| ALY06862.1 | KU052488_p41 | hypothetical protein | phrog_26589 | unknown function | unknown function | -1 | 36135 | 36446 |
| ALY06859.1 | KU052488_p37 | sensor protein | phrog_98 | unknown function | unknown function | 1 | 34124 | 34579 |
| ALY06914.1 | KU052488_p93 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 61142 | 61579 |
| ALY06942.1 | KU052488_p121 | DNA-binding protein | phrog_20695 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 77888 | 79054 |
| ALY06917.1 | KU052488_p96 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 62964 | 64025 |
| ALY06938.1 | KU052488_p117 | hypothetical protein | phrog_14203 | unknown function | unknown function | 1 | 73914 | 74201 |
| ALY06846.1 | KU052488_p24 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 26820 | 28133 |
| ALY06898.1 | KU052488_p77 | single-stranded-DNA-specific exonuclease | phrog_2484 | RecJ-like ssDNA exonuclease | DNA, RNA and nucleotide metabolism | -1 | 51180 | 52925 |
| ALY06866.1 | KU052488_p45 | hypothetical protein | phrog_20607 | unknown function | unknown function | -1 | 37833 | 38147 |
| ALY06894.1 | KU052488_p73 | hypothetical protein | phrog_7591 | unknown function | unknown function | -1 | 49924 | 50154 |
| ALY06885.1 | KU052488_p64 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 45868 | 46719 |
| ALY06934.1 | KU052488_p113 | hypothetical protein | phrog_22118 | unknown function | unknown function | 1 | 72264 | 72575 |
| ALY06927.1 | KU052488_p106 | methyltransferase | phrog_954 | DNA methyltransferase | other | 1 | 68162 | 68647 |
| ALY06908.1 | KU052488_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58762 | 58968 |
| ALY06940.1 | KU052488_p119 | TraG-like protein | phrog_17034 | unknown function | unknown function | 1 | 74509 | 74835 |
| ALY06853.1 | KU052488_p31 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 31580 | 32032 |
| ALY06863.1 | KU052488_p42 | hypothetical protein | phrog_14183 | unknown function | unknown function | -1 | 36439 | 36897 |
| ALY06896.1 | KU052488_p75 | hypothetical protein | phrog_24165 | unknown function | unknown function | -1 | 50448 | 50966 |
| ALY06923.1 | KU052488_p102 | NrdH family redoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 66809 | 67129 |
| ALY06868.1 | KU052488_p47 | hypothetical protein | phrog_8645 | unknown function | unknown function | -1 | 38962 | 39210 |
| ALY06844.1 | KU052488_p22 | hypothetical protein | phrog_341 | major tail protein | tail | -1 | 23952 | 24401 |
| ALY06899.1 | KU052488_p78 | hypothetical protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 52928 | 53830 |
| ALY06878.1 | KU052488_p57 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 42952 | 43563 |
| ALY06893.1 | KU052488_p72 | hypothetical protein | phrog_7591 | unknown function | unknown function | -1 | 49621 | 49908 |
| ALY06867.1 | KU052488_p46 | hypothetical protein | phrog_10700 | unknown function | unknown function | -1 | 38308 | 38625 |
| ALY06939.1 | KU052488_p118 | hypothetical protein | phrog_15801 | unknown function | unknown function | 1 | 74140 | 74508 |
| ALY06922.1 | KU052488_p101 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66530 | 66748 |
| ALY06904.1 | KU052488_p83 | hypothetical protein | phrog_26884 | unknown function | unknown function | -1 | 57185 | 57463 |
| ALY06928.1 | KU052488_p107 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 68647 | 69771 |
| ALY06836.1 | KU052488_p14 | tail tape measure protein | phrog_167 | tail length tape measure protein | tail | -1 | 15301 | 20961 |
| ALY06880.1 | KU052488_p59 | hypothetical protein | phrog_23755 | unknown function | unknown function | -1 | 44072 | 44263 |
| ALY06884.1 | KU052488_p63 | hypothetical protein | phrog_17062 | unknown function | unknown function | -1 | 45386 | 45790 |
| ALY06873.1 | KU052488_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41072 | 41323 |
| ALY06919.1 | KU052488_p98 | hypothetical protein | phrog_24137 | unknown function | unknown function | 1 | 64202 | 64408 |
| ALY06823.1 | KU052488_p1 | DNA polymerase III alpha subunit | singleton | unknown function | unknown function | 1 | 51 | 830 |
| ALY06874.1 | KU052488_p53 | hypothetical protein | phrog_38242 | unknown function | unknown function | -1 | 41176 | 41517 |
| ALY06827.1 | KU052488_p5 | holin | phrog_1009 | unknown function | unknown function | -1 | 2541 | 2837 |
| ALY06909.1 | KU052488_p88 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58988 | 59173 |
| ALY06839.1 | KU052488_p17 | major tail protein | phrog_88 | major tail protein | tail | -1 | 21738 | 22349 |
| ALY06920.1 | KU052488_p99 | DNA polymerase | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 64405 | 65631 |