Genomic map of Clostridium phage CDSH1 (KU057941)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KU057941
Definition
Clostridium phage CDSH1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
41619
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
30.81
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ALY06977.1 KU057941_p34 hypothetical protein phrog_738 unknown function unknown function -1 30747 30899
ALY06969.1 KU057941_p26 hypothetical protein phrog_6775 unknown function unknown function 1 25750 26580
ALY06980.1 KU057941_p37 Cro/C1-type transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 34792 35145
ALY06960.1 KU057941_p17 tail tape measure phrog_1272 tail length tape measure protein tail 1 11271 16574
ALY06986.1 KU057941_p43 hypothetical protein phrog_5442 unknown function unknown function 1 37424 37735
ALY06948.1 KU057941_p5 hypothetical protein phrog_1233 unknown function unknown function 1 4656 4982
ALY06981.1 KU057941_p38 hypothetical protein phrog_6407 unknown function unknown function 1 35318 35500
ALY06995.1 KU057941_p52 hypothetical protein phrog_27502 unknown function unknown function 1 40742 40873
ALY06959.1 KU057941_p16 hypothetical protein phrog_7974 unknown function unknown function 1 10524 11165
ALY06949.1 KU057941_p6 hypothetical protein phrog_419 unknown function unknown function 1 4998 5279
ALY06968.1 KU057941_p25 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 25359 25571
ALY06972.1 KU057941_p29 hypothetical protein phrog_4021 unknown function unknown function -1 27888 28169
ALY06976.1 KU057941_p33 hypothetical protein phrog_5134 unknown function unknown function -1 30166 30294
ALY06996.1 KU057941_p53 recombinase/resolvase phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 1 40995 41591
ALY06962.1 KU057941_p19 tail endopeptidase phrog_8687 tail protein with peptidase activity other 1 17465 19558
ALY06984.1 KU057941_p41 hypothetical protein phrog_1029 unknown function unknown function 1 36494 37207
ALY06965.1 KU057941_p22 tail protein phrog_7809 tail fiber protein tail 1 22304 24154
ALY06946.1 KU057941_p3 portal protein phrog_533 portal protein head and packaging 1 2018 3430
ALY06993.1 KU057941_p50 sigma70/sigmaF-like protein phrog_36 transcriptional regulator transcription regulation 1 39199 39771
ALY06956.1 KU057941_p13 hypothetical protein phrog_3099 unknown function unknown function 1 8624 9424
ALY06973.1 KU057941_p30 hypothetical protein phrog_4741 unknown function unknown function -1 28313 28645
ALY06953.1 KU057941_p10 hypothetical protein phrog_3366 unknown function unknown function 1 7405 7839
ALY06967.1 KU057941_p24 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 24504 25310
ALY06978.1 KU057941_p35 DNAse/helicase phrog_5173 unknown function unknown function 1 31419 33584
ALY06950.1 KU057941_p7 scaffolding protein phrog_194 head scaffolding protein head and packaging 1 5411 5983
ALY06992.1 KU057941_p49 hypothetical protein phrog_7197 unknown function unknown function 1 39014 39187
ALY06954.1 KU057941_p11 minor capsid protein phrog_556 minor head protein head and packaging 1 7846 8193
ALY06964.1 KU057941_p21 tail fiber protein phrog_9525 tail fiber protein tail 1 19833 22304
ALY06985.1 KU057941_p42 hypothetical protein phrog_2065 unknown function unknown function 1 37263 37427
ALY06958.1 KU057941_p15 hypothetical protein phrog_706 unknown function unknown function 1 9844 10452
ALY06945.1 KU057941_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 695 2017
ALY06957.1 KU057941_p14 hypothetical protein phrog_4450 unknown function unknown function 1 9482 9844
ALY06987.1 KU057941_p44 hypothetical protein phrog_2569 unknown function unknown function 1 37781 37930
ALY06955.1 KU057941_p12 hypothetical protein phrog_3266 tail completion connector 1 8190 8621
ALY06991.1 KU057941_p48 hypothetical protein phrog_1310 unknown function unknown function 1 38665 39030
ALY06994.1 KU057941_p51 integrase phrog_216 integrase integration and excision 1 39949 40557
ALY06944.1 KU057941_p1 terminase small subunit phrog_509 terminase small subunit head and packaging 1 1 708
ALY06970.1 KU057941_p27 hypothetical protein phrog_6809 unknown function unknown function 1 26659 27165
ALY06963.1 KU057941_p20 hypothetical protein phrog_6130 unknown function unknown function 1 19585 19827
ALY06988.1 KU057941_p45 hypothetical protein phrog_3221 unknown function unknown function 1 37961 38134
ALY06952.1 KU057941_p9 head-tail connector protein phrog_541 head-tail adaptor connector 1 7071 7403
ALY06947.1 KU057941_p4 minor capsid protein phrog_581 minor head protein head and packaging 1 3431 4654
ALY06983.1 KU057941_p40 replication terminator-like protein phrog_997 replication terminator DNA, RNA and nucleotide metabolism 1 36067 36471
ALY06990.1 KU057941_p47 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 38247 38573
ALY06974.1 KU057941_p31 CobQ/CobB/MinD/ParA nucleotide binding domain protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 28646 29455
ALY06989.1 KU057941_p46 hypothetical protein phrog_6827 unknown function unknown function 1 38134 38250
ALY06982.1 KU057941_p39 hypothetical protein phrog_4206 unknown function unknown function 1 35567 35992
ALY06966.1 KU057941_p23 holin phrog_4884 holin lysis 1 24240 24503
ALY06971.1 KU057941_p28 hypothetical protein phrog_4337 unknown function unknown function 1 27185 27655
ALY06975.1 KU057941_p32 hypothetical protein phrog_2329 unknown function unknown function -1 29744 29926
ALY06951.1 KU057941_p8 coat protein phrog_247 major head protein head and packaging 1 5994 7067
ALY06979.1 KU057941_p36 hypothetical protein phrog_6335 unknown function unknown function 1 33631 33978
ALY06961.1 KU057941_p18 tail protein phrog_33 distal tail protein Dit tail 1 16695 17429