| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KU197013 |
Definition |
Xanthomonas phage XAJ24, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Pradovirus; Xanthomonas virus XAJ24. |
DB of origin |
NUCCORE |
Length |
44862 |
Host Name |
Xanthomonas arboricola |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
58.2 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AMW36091.1 | KU197013_p28 | DNA dependent RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 16336 | 18834 |
| AMW36098.1 | KU197013_p37 | endonuclease VII | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 24299 | 24733 |
| AMW36090.1 | KU197013_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16145 | 16336 |
| AMW36078.1 | KU197013_p13 | hypothetical protein | phrog_13079 | unknown function | unknown function | 1 | 4978 | 5424 |
| AMW36115.1 | KU197013_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1159 | 1272 |
| AMW36081.1 | KU197013_p16 | helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 6753 | 7934 |
| AMW36111.1 | KU197013_p51 | endolysin | phrog_7 | endolysin | lysis | 1 | 43266 | 43817 |
| AMW36119.1 | KU197013_p32 | hypothetical protein | phrog_449 | head-tail adaptor | connector | 1 | 19958 | 21496 |
| AMW36072.1 | KU197013_p7 | hypothetical protein | phrog_17163 | unknown function | unknown function | 1 | 3060 | 3188 |
| AMW36095.1 | KU197013_p34 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 22335 | 23336 |
| AMW36120.1 | KU197013_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41567 | 43006 |
| AMW36069.1 | KU197013_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1912 | 2091 |
| AMW36070.1 | KU197013_p5 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2337 | 2852 |
| AMW36097.1 | KU197013_p36 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23675 | 24289 |
| AMW36096.1 | KU197013_p35 | hypothetical protein | phrog_18075 | unknown function | unknown function | 1 | 23409 | 23621 |
| AMW36079.1 | KU197013_p14 | hypothetical protein | phrog_22192 | unknown function | unknown function | 1 | 5421 | 5672 |
| AMW36076.1 | KU197013_p11 | hypothetical protein | phrog_18386 | unknown function | unknown function | 1 | 4220 | 4561 |
| AMW36086.1 | KU197013_p22 | DNA exonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 13131 | 13520 |
| AMW36102.1 | KU197013_p41 | internal virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30478 | 35382 |
| AMW36084.1 | KU197013_p20 | hypothetical protein | phrog_6234 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 12047 | 12202 |
| AMW36089.1 | KU197013_p26 | ATP dependent DNA lygase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 15246 | 16148 |
| AMW36099.1 | KU197013_p38 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24730 | 27234 |
| AMW36088.1 | KU197013_p25 | hypothetical protein | phrog_14849 | unknown function | unknown function | 1 | 14938 | 15249 |
| AMW36082.1 | KU197013_p17 | hypothetical protein | phrog_22988 | unknown function | unknown function | 1 | 7931 | 8248 |
| AMW36068.1 | KU197013_p3 | hypothetical protein | phrog_15315 | unknown function | unknown function | 1 | 1619 | 1864 |
| AMW36108.1 | KU197013_p47 | terminase small subunit | phrog_891 | terminase small subunit | head and packaging | 1 | 39477 | 39764 |
| AMW36080.1 | KU197013_p15 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 5789 | 6610 |
| AMW36101.1 | KU197013_p40 | internal virion protein | phrog_3883 | internal virion protein | head and packaging | 1 | 28277 | 30466 |
| AMW36071.1 | KU197013_p6 | hypothetical protein | phrog_4927 | unknown function | unknown function | 1 | 2852 | 3058 |
| AMW36094.1 | KU197013_p33 | scaffold protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 21493 | 22314 |
| AMW36075.1 | KU197013_p10 | hypothetical protein | phrog_17604 | unknown function | unknown function | 1 | 3930 | 4220 |
| AMW36093.1 | KU197013_p31 | hypothetical protein | phrog_6529 | unknown function | unknown function | 1 | 19609 | 19956 |
| AMW36085.1 | KU197013_p21 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 12202 | 13134 |
| AMW36073.1 | KU197013_p8 | hypothetical protein | phrog_18127 | unknown function | unknown function | 1 | 3169 | 3399 |
| AMW36087.1 | KU197013_p24 | hypothetical protein | phrog_5033 | endolysin; inhibits RNA polymerase | lysis | 1 | 14393 | 14941 |
| AMW36105.1 | KU197013_p44 | tail fiber protein | phrog_4176 | tail fiber protein | tail | 1 | 37758 | 38705 |
| AMW36106.1 | KU197013_p45 | tail fiber protein | phrog_4950 | tail fiber protein | tail | 1 | 38702 | 39283 |
| AMW36107.1 | KU197013_p46 | holin | phrog_14453 | holin | lysis | 1 | 39296 | 39496 |
| AMW36117.1 | KU197013_p23 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 13517 | 14383 |
| AMW36112.1 | KU197013_p52 | i-spanin | phrog_5151 | Rz-like spanin | lysis | 1 | 43796 | 44119 |
| AMW36100.1 | KU197013_p39 | internal virion protein | phrog_11550 | internal virion protein | head and packaging | 1 | 27234 | 28109 |
| AMW36074.1 | KU197013_p9 | hypothetical protein | phrog_18653 | unknown function | unknown function | 1 | 3392 | 3937 |
| AMW36116.1 | KU197013_p18 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 8286 | 10763 |
| AMW36092.1 | KU197013_p29 | hypothetical protein | phrog_5112 | unknown function | unknown function | 1 | 18948 | 19151 |
| AMW36113.1 | KU197013_p53 | o-spanin | phrog_456 | Rz-like spanin | lysis | 1 | 44079 | 44315 |
| AMW36109.1 | KU197013_p48 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 39757 | 41565 |
| AMW36110.1 | KU197013_p50 | hypothetical protein | phrog_15619 | unknown function | unknown function | 1 | 43017 | 43262 |
| AMW36077.1 | KU197013_p12 | hypothetical protein | phrog_3543 | unknown function | unknown function | 1 | 4558 | 4899 |
| AMW36104.1 | KU197013_p43 | tail fiber protein | phrog_12940 | tail fiber protein | tail | 1 | 36562 | 37761 |
| AMW36103.1 | KU197013_p42 | tail fiber protein | phrog_2710 | tail fiber protein | tail | 1 | 35444 | 36562 |
| AMW36114.1 | KU197013_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 77 | 247 |
| AMW36118.1 | KU197013_p30 | hypothetical protein | phrog_6472 | unknown function | unknown function | 1 | 19255 | 19605 |
| AMW36083.1 | KU197013_p19 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 11163 | 12047 |