| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KU252585 |
Definition |
Gordonia phage Howe, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
53182 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
65.6 |
Number of singletons |
15 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALY07646.1 | KU252585_p12 | major tail protein | phrog_3884 | major tail protein | tail | 1 | 7820 | 8341 |
| ALY07692.1 | KU252585_p58 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41496 | 42002 |
| ALY07693.1 | KU252585_p59 | hypothetical protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41999 | 43018 |
| ALY07684.1 | KU252585_p50 | hypothetical protein | phrog_21001 | unknown function | unknown function | 1 | 38326 | 38745 |
| ALY07650.1 | KU252585_p15 | tail assembly chaperone | phrog_3860 | tail assembly chaperone | tail | 1 | 9045 | 9967 |
| ALY07635.1 | KU252585_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 14 | 346 |
| ALY07704.1 | KU252585_p70 | helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 47494 | 48747 |
| ALY07651.1 | KU252585_p17 | hypothetical protein | phrog_19756 | unknown function | unknown function | -1 | 9933 | 10460 |
| ALY07685.1 | KU252585_p51 | hypothetical protein | phrog_7723 | unknown function | unknown function | 1 | 38742 | 38969 |
| ALY07711.1 | KU252585_p77 | hypothetical protein | phrog_17450 | unknown function | unknown function | 1 | 51606 | 52001 |
| ALY07640.1 | KU252585_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 4904 | 5836 |
| ALY07709.1 | KU252585_p75 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 50324 | 51061 |
| ALY07649.1 | KU252585_p16 | tail assembly chaperone | phrog_3860 | tail assembly chaperone | tail | 1 | 9045 | 9698 |
| ALY07677.1 | KU252585_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34334 | 34783 |
| ALY07702.1 | KU252585_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46350 | 46568 |
| ALY07667.1 | KU252585_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28712 | 28855 |
| ALY07698.1 | KU252585_p64 | hypothetical protein | phrog_7793 | unknown function | unknown function | 1 | 44501 | 44614 |
| ALY07660.1 | KU252585_p26 | hypothetical protein | phrog_7719 | minor tail protein | tail | 1 | 22619 | 23656 |
| ALY07645.1 | KU252585_p11 | hypothetical protein | phrog_2595 | head-tail connector protein | connector | 1 | 7377 | 7817 |
| ALY07642.1 | KU252585_p8 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6280 | 6651 |
| ALY07639.1 | KU252585_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4490 | 4900 |
| ALY07657.1 | KU252585_p23 | hypothetical protein | phrog_38409 | unknown function | unknown function | 1 | 21098 | 21331 |
| ALY07665.1 | KU252585_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26976 | 28301 |
| ALY07658.1 | KU252585_p24 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 21328 | 21834 |
| ALY07670.1 | KU252585_p36 | integrase | phrog_1 | integrase | integration and excision | 1 | 30765 | 31682 |
| ALY07675.1 | KU252585_p41 | hypothetical protein | phrog_5316 | unknown function | unknown function | -1 | 33654 | 33884 |
| ALY07652.1 | KU252585_p18 | tape measure protein | phrog_7025 | tail length tape measure protein | tail | 1 | 10520 | 17068 |
| ALY07655.1 | KU252585_p21 | minor tail protein | phrog_2998 | endolysin | lysis | 1 | 19524 | 20633 |
| ALY07653.1 | KU252585_p19 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 17069 | 17905 |
| ALY07668.1 | KU252585_p34 | XRE family transcriptional regulator | phrog_2439 | transcriptional regulator | transcription regulation | -1 | 28949 | 29995 |
| ALY07706.1 | KU252585_p72 | hypothetical protein | phrog_14446 | unknown function | unknown function | 1 | 49160 | 49678 |
| ALY07644.1 | KU252585_p10 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 7051 | 7380 |
| ALY07689.1 | KU252585_p55 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 40090 | 40332 |
| ALY07679.1 | KU252585_p45 | immunity repressor | phrog_6288 | unknown function | unknown function | -1 | 35455 | 36354 |
| ALY07647.1 | KU252585_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8341 | 8514 |
| ALY07694.1 | KU252585_p60 | hypothetical protein | phrog_32096 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 43018 | 43305 |
| ALY07703.1 | KU252585_p69 | hypothetical protein | phrog_22834 | unknown function | unknown function | 1 | 46565 | 47497 |
| ALY07705.1 | KU252585_p71 | endonuclease | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48762 | 49163 |
| ALY07669.1 | KU252585_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29995 | 30615 |
| ALY07683.1 | KU252585_p49 | HTH DNA binding protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 37454 | 38329 |
| ALY07707.1 | KU252585_p73 | hypothetical protein | phrog_36536 | unknown function | unknown function | 1 | 49672 | 49965 |
| ALY07714.1 | KU252585_p80 | hypothetical protein | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52736 | 53092 |
| ALY07643.1 | KU252585_p9 | hypothetical protein | phrog_3881 | head-tail connector protein | connector | 1 | 6719 | 7039 |
| ALY07701.1 | KU252585_p67 | hypothetical protein | phrog_21138 | unknown function | unknown function | 1 | 45757 | 46353 |
| ALY07696.1 | KU252585_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44018 | 44236 |
| ALY07687.1 | KU252585_p53 | hypothetical protein | phrog_9213 | unknown function | unknown function | 1 | 39241 | 39459 |
| ALY07673.1 | KU252585_p39 | hypothetical protein | phrog_34494 | unknown function | unknown function | 1 | 32367 | 32549 |
| ALY07637.1 | KU252585_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 1915 | 3219 |
| ALY07708.1 | KU252585_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49962 | 50327 |
| ALY07663.1 | KU252585_p29 | endolysin | singleton | unknown function | unknown function | 1 | 24492 | 25715 |
| ALY07690.1 | KU252585_p56 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 40329 | 40643 |
| ALY07695.1 | KU252585_p61 | hypothetical protein | phrog_19094 | unknown function | unknown function | 1 | 43302 | 44021 |
| ALY07678.1 | KU252585_p44 | antitoxin | phrog_31673 | unknown function | unknown function | -1 | 34780 | 35391 |
| ALY07699.1 | KU252585_p65 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 44611 | 45450 |
| ALY07638.1 | KU252585_p4 | capsid maturation protease | phrog_2976 | head maturation protease | head and packaging | 1 | 3216 | 4487 |
| ALY07664.1 | KU252585_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25712 | 26899 |
| ALY07697.1 | KU252585_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44229 | 44504 |
| ALY07636.1 | KU252585_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 318 | 1901 |
| ALY07666.1 | KU252585_p32 | hypothetical protein | phrog_6153 | unknown function | unknown function | -1 | 28453 | 28665 |
| ALY07661.1 | KU252585_p27 | hypothetical protein | phrog_24626 | unknown function | unknown function | 1 | 23653 | 23889 |
| ALY07676.1 | KU252585_p42 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 33877 | 34200 |
| ALY07641.1 | KU252585_p7 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 5836 | 6276 |
| ALY07672.1 | KU252585_p38 | hypothetical protein | phrog_35716 | unknown function | unknown function | 1 | 32003 | 32341 |
| ALY07710.1 | KU252585_p76 | hypothetical protein | phrog_9543 | unknown function | unknown function | 1 | 51290 | 51619 |
| ALY07654.1 | KU252585_p20 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17902 | 19482 |
| ALY07713.1 | KU252585_p79 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 52326 | 52736 |
| ALY07662.1 | KU252585_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23889 | 24479 |
| ALY07700.1 | KU252585_p66 | hypothetical protein | phrog_10621 | unknown function | unknown function | 1 | 45450 | 45644 |
| ALY07680.1 | KU252585_p46 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 36582 | 36854 |
| ALY07682.1 | KU252585_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37012 | 37398 |
| ALY07686.1 | KU252585_p52 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 38966 | 39244 |
| ALY07648.1 | KU252585_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 8596 | 8943 |
| ALY07656.1 | KU252585_p22 | hypothetical protein | phrog_31213 | unknown function | unknown function | 1 | 20665 | 21045 |
| ALY07691.1 | KU252585_p57 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 40640 | 41503 |
| ALY07712.1 | KU252585_p78 | hypothetical protein | phrog_10381 | unknown function | unknown function | 1 | 52001 | 52309 |
| ALY07659.1 | KU252585_p25 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 21873 | 22619 |
| ALY07681.1 | KU252585_p47 | hypothetical protein | phrog_16839 | unknown function | unknown function | 1 | 36854 | 37015 |
| ALY07688.1 | KU252585_p54 | DNA methylase | phrog_111 | DNA methyltransferase | other | 1 | 39545 | 40093 |
| ALY07671.1 | KU252585_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31679 | 31846 |
| ALY07674.1 | KU252585_p40 | integrase | phrog_1 | integrase | integration and excision | 1 | 32549 | 33676 |