Genomic map of Clostridium phage HM T (KU517658)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KU517658
Definition
Clostridium phage HM T, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
38039
Host Name
Clostridium saccharoperbutylacetonicum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
29.02
Number of singletons
17
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AMB17452.1 KU517658_p40 hypothetical protein phrog_28838 unknown function unknown function 1 30123 31787
AMB17457.1 KU517658_p45 hypothetical protein phrog_9492 unknown function unknown function 1 34795 35205
AMB17421.1 KU517658_p9 transcriptional regulator phrog_6499 transcriptional regulator transcription regulation 1 6091 6522
AMB17427.1 KU517658_p15 replisome organizer phrog_19658 replication initiation protein DNA, RNA and nucleotide metabolism 1 7994 8833
AMB17450.1 KU517658_p38 tail protein phrog_33 distal tail protein Dit tail 1 27625 28326
AMB17447.1 KU517658_p35 hypothetical protein phrog_2115 tail protein tail 1 23843 24199
AMB17443.1 KU517658_p31 head-tail adaptor phrog_25 head closure Hc1 connector 1 22112 22450
AMB17437.1 KU517658_p25 hypothetical protein phrog_1066 unknown function unknown function 1 16615 16986
AMB17441.1 KU517658_p29 capsid protein phrog_10 major head protein head and packaging 1 20571 21824
AMB17423.1 KU517658_p11 hypothetical protein singleton unknown function unknown function 1 6776 6985
AMB17448.1 KU517658_p36 hypothetical protein singleton unknown function unknown function 1 24268 24396
AMB17442.1 KU517658_p30 DNA-packaging protein phrog_5223 neck protein connector 1 21834 22115
AMB17414.1 KU517658_p2 Zn peptidase phrog_87 metallo-protease other -1 1731 2228
AMB17433.1 KU517658_p21 hypothetical protein singleton unknown function unknown function 1 13376 13561
AMB17458.1 KU517658_p46 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 35321 36094
AMB17432.1 KU517658_p20 sigma factor singleton unknown function unknown function 1 12758 13150
AMB17424.1 KU517658_p12 hypothetical protein singleton unknown function unknown function 1 7166 7357
AMB17431.1 KU517658_p19 restriction endonuclease singleton unknown function unknown function 1 10220 12583
AMB17440.1 KU517658_p28 peptidase phrog_94 head maturation protease head and packaging 1 19817 20581
AMB17460.1 KU517658_p48 beta-lactamase-inhibitor protein BLIP phrog_6148 beta-lactamase-inhibitor protein BLIP moron, auxiliary metabolic gene and host takeover 1 36855 37547
AMB17436.1 KU517658_p24 hypothetical protein singleton unknown function unknown function 1 16327 16515
AMB17419.1 KU517658_p7 DNA-binding protein phrog_8 transcriptional regulator transcription regulation -1 5345 5683
AMB17425.1 KU517658_p13 RNA polymerase phrog_7199 RNA polymerase DNA, RNA and nucleotide metabolism 1 7449 7631
AMB17446.1 KU517658_p34 major tail protein phrog_88 major tail protein tail 1 23212 23790
AMB17444.1 KU517658_p32 hypothetical protein phrog_78 tail terminator connector 1 22462 22812
AMB17435.1 KU517658_p23 secreted metalloprotease singleton unknown function unknown function 1 14650 16137
AMB17422.1 KU517658_p10 hypothetical protein singleton unknown function unknown function 1 6579 6743
AMB17455.1 KU517658_p43 hypothetical protein phrog_22121 unknown function unknown function 1 32615 34504
AMB17417.1 KU517658_p5 hypothetical protein phrog_9699 unknown function unknown function -1 4221 5018
AMB17416.1 KU517658_p4 hypothetical protein singleton unknown function unknown function 1 3357 4073
AMB17434.1 KU517658_p22 integrase family protein phrog_216 integrase integration and excision 1 13577 14182
AMB17459.1 KU517658_p47 rubrerythrin singleton unknown function unknown function -1 36188 36589
AMB17413.1 KU517658_p1 DNA invertase Pin-like site-specific recombinase phrog_95 integrase integration and excision -1 15 1628
AMB17418.1 KU517658_p6 hypothetical protein singleton unknown function unknown function -1 4976 5122
AMB17453.1 KU517658_p41 hypothetical protein phrog_24451 unknown function unknown function 1 31799 32131
AMB17430.1 KU517658_p18 hypothetical protein singleton unknown function unknown function 1 9838 10083
AMB17426.1 KU517658_p14 hypothetical protein singleton unknown function unknown function 1 7655 7918
AMB17429.1 KU517658_p17 MarR family transcriptional regulator singleton unknown function unknown function 1 9569 9724
AMB17439.1 KU517658_p27 portal protein phrog_12 portal protein head and packaging 1 18663 19817
AMB17449.1 KU517658_p37 tail tape measure protein phrog_1272 tail length tape measure protein tail 1 24414 27623
AMB17454.1 KU517658_p42 hypothetical protein singleton unknown function unknown function 1 32133 32282
AMB17445.1 KU517658_p33 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 22812 23195
AMB17456.1 KU517658_p44 hypothetical protein phrog_2429 involved in bacteriocin production or immunity moron, auxiliary metabolic gene and host takeover 1 34584 34787
AMB17428.1 KU517658_p16 hypothetical protein phrog_15215 unknown function unknown function 1 8826 9542
AMB17451.1 KU517658_p39 minor structural protein phrog_33972 tail protein tail 1 28326 30107
AMB17438.1 KU517658_p26 terminase phrog_9 terminase large subunit head and packaging 1 16983 18647
AMB17415.1 KU517658_p3 hypothetical protein singleton unknown function unknown function 1 2405 3340
AMB17420.1 KU517658_p8 HTH-type transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 5846 6058