| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KU517658 |
Definition |
Clostridium phage HM T, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
38039 |
Host Name |
Clostridium saccharoperbutylacetonicum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
29.02 |
Number of singletons |
17 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AMB17452.1 | KU517658_p40 | hypothetical protein | phrog_28838 | unknown function | unknown function | 1 | 30123 | 31787 |
| AMB17457.1 | KU517658_p45 | hypothetical protein | phrog_9492 | unknown function | unknown function | 1 | 34795 | 35205 |
| AMB17421.1 | KU517658_p9 | transcriptional regulator | phrog_6499 | transcriptional regulator | transcription regulation | 1 | 6091 | 6522 |
| AMB17427.1 | KU517658_p15 | replisome organizer | phrog_19658 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 7994 | 8833 |
| AMB17450.1 | KU517658_p38 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 27625 | 28326 |
| AMB17447.1 | KU517658_p35 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 23843 | 24199 |
| AMB17443.1 | KU517658_p31 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 22112 | 22450 |
| AMB17437.1 | KU517658_p25 | hypothetical protein | phrog_1066 | unknown function | unknown function | 1 | 16615 | 16986 |
| AMB17441.1 | KU517658_p29 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 20571 | 21824 |
| AMB17423.1 | KU517658_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6776 | 6985 |
| AMB17448.1 | KU517658_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24268 | 24396 |
| AMB17442.1 | KU517658_p30 | DNA-packaging protein | phrog_5223 | neck protein | connector | 1 | 21834 | 22115 |
| AMB17414.1 | KU517658_p2 | Zn peptidase | phrog_87 | metallo-protease | other | -1 | 1731 | 2228 |
| AMB17433.1 | KU517658_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13376 | 13561 |
| AMB17458.1 | KU517658_p46 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 35321 | 36094 |
| AMB17432.1 | KU517658_p20 | sigma factor | singleton | unknown function | unknown function | 1 | 12758 | 13150 |
| AMB17424.1 | KU517658_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7166 | 7357 |
| AMB17431.1 | KU517658_p19 | restriction endonuclease | singleton | unknown function | unknown function | 1 | 10220 | 12583 |
| AMB17440.1 | KU517658_p28 | peptidase | phrog_94 | head maturation protease | head and packaging | 1 | 19817 | 20581 |
| AMB17460.1 | KU517658_p48 | beta-lactamase-inhibitor protein BLIP | phrog_6148 | beta-lactamase-inhibitor protein BLIP | moron, auxiliary metabolic gene and host takeover | 1 | 36855 | 37547 |
| AMB17436.1 | KU517658_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16327 | 16515 |
| AMB17419.1 | KU517658_p7 | DNA-binding protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 5345 | 5683 |
| AMB17425.1 | KU517658_p13 | RNA polymerase | phrog_7199 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 7449 | 7631 |
| AMB17446.1 | KU517658_p34 | major tail protein | phrog_88 | major tail protein | tail | 1 | 23212 | 23790 |
| AMB17444.1 | KU517658_p32 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 22462 | 22812 |
| AMB17435.1 | KU517658_p23 | secreted metalloprotease | singleton | unknown function | unknown function | 1 | 14650 | 16137 |
| AMB17422.1 | KU517658_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6579 | 6743 |
| AMB17455.1 | KU517658_p43 | hypothetical protein | phrog_22121 | unknown function | unknown function | 1 | 32615 | 34504 |
| AMB17417.1 | KU517658_p5 | hypothetical protein | phrog_9699 | unknown function | unknown function | -1 | 4221 | 5018 |
| AMB17416.1 | KU517658_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3357 | 4073 |
| AMB17434.1 | KU517658_p22 | integrase family protein | phrog_216 | integrase | integration and excision | 1 | 13577 | 14182 |
| AMB17459.1 | KU517658_p47 | rubrerythrin | singleton | unknown function | unknown function | -1 | 36188 | 36589 |
| AMB17413.1 | KU517658_p1 | DNA invertase Pin-like site-specific recombinase | phrog_95 | integrase | integration and excision | -1 | 15 | 1628 |
| AMB17418.1 | KU517658_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4976 | 5122 |
| AMB17453.1 | KU517658_p41 | hypothetical protein | phrog_24451 | unknown function | unknown function | 1 | 31799 | 32131 |
| AMB17430.1 | KU517658_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9838 | 10083 |
| AMB17426.1 | KU517658_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7655 | 7918 |
| AMB17429.1 | KU517658_p17 | MarR family transcriptional regulator | singleton | unknown function | unknown function | 1 | 9569 | 9724 |
| AMB17439.1 | KU517658_p27 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 18663 | 19817 |
| AMB17449.1 | KU517658_p37 | tail tape measure protein | phrog_1272 | tail length tape measure protein | tail | 1 | 24414 | 27623 |
| AMB17454.1 | KU517658_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32133 | 32282 |
| AMB17445.1 | KU517658_p33 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 22812 | 23195 |
| AMB17456.1 | KU517658_p44 | hypothetical protein | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 34584 | 34787 |
| AMB17428.1 | KU517658_p16 | hypothetical protein | phrog_15215 | unknown function | unknown function | 1 | 8826 | 9542 |
| AMB17451.1 | KU517658_p39 | minor structural protein | phrog_33972 | tail protein | tail | 1 | 28326 | 30107 |
| AMB17438.1 | KU517658_p26 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 16983 | 18647 |
| AMB17415.1 | KU517658_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2405 | 3340 |
| AMB17420.1 | KU517658_p8 | HTH-type transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 5846 | 6058 |