| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KU747973 |
Definition |
Pseudoalteromonas phage vB_PspS-H40/1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
45306 |
Host Name |
Pseudoalteromonas sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
73 |
%GC |
40.14 |
Number of singletons |
15 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANI22024.1 | KU747973_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7134 | 7736 |
| ANI22056.1 | KU747973_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26369 | 26551 |
| ANI22052.1 | KU747973_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25059 | 25415 |
| ANI22046.1 | KU747973_p29 | cas4-like nuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18687 | 19763 |
| ANI22087.1 | KU747973_p70 | hypothetical protein | phrog_791 | unknown function | unknown function | -1 | 41686 | 42306 |
| ANI22030.1 | KU747973_p13 | hypothetical protein | phrog_11651 | unknown function | unknown function | 1 | 9257 | 9466 |
| ANI22053.1 | KU747973_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25495 | 25869 |
| ANI22029.1 | KU747973_p12 | hypothetical protein | phrog_38632 | unknown function | unknown function | -1 | 8976 | 9164 |
| ANI22089.1 | KU747973_p72 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 44459 | 44860 |
| ANI22083.1 | KU747973_p66 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 39277 | 39672 |
| ANI22055.1 | KU747973_p38 | hypothetical protein | phrog_20926 | unknown function | unknown function | 1 | 26175 | 26372 |
| ANI22051.1 | KU747973_p34 | bifunctional DNA primase/polymerase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 22051 | 24444 |
| ANI22048.1 | KU747973_p31 | NTPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 20442 | 21224 |
| ANI22044.1 | KU747973_p27 | RNaseH-like domain protein | phrog_1770 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 16560 | 17066 |
| ANI22018.1 | KU747973_p1 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 5 | 508 |
| ANI22032.1 | KU747973_p15 | portal protein | phrog_146 | portal protein | head and packaging | -1 | 10536 | 11930 |
| ANI22023.1 | KU747973_p6 | hypothetical protein | phrog_1141 | tail fiber protein | tail | 1 | 6689 | 7132 |
| ANI22078.1 | KU747973_p61 | hypothetical protein | phrog_20960 | unknown function | unknown function | 1 | 37454 | 38008 |
| ANI22080.1 | KU747973_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38386 | 38556 |
| ANI22057.1 | KU747973_p40 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 26619 | 27011 |
| ANI22042.1 | KU747973_p25 | hypothetical protein | phrog_409 | transcriptional regulator | transcription regulation | -1 | 15984 | 16151 |
| ANI22026.1 | KU747973_p9 | hypothetical protein | phrog_28598 | unknown function | unknown function | -1 | 8265 | 8441 |
| ANI22079.1 | KU747973_p62 | hypothetical protein | phrog_18364 | unknown function | unknown function | 1 | 38015 | 38383 |
| ANI22070.1 | KU747973_p53 | hypothetical protein | phrog_31507 | unknown function | unknown function | 1 | 33812 | 34351 |
| ANI22081.1 | KU747973_p64 | hypothetical protein | phrog_786 | unknown function | unknown function | 1 | 38541 | 38924 |
| ANI22040.1 | KU747973_p23 | hypothetical protein | phrog_35941 | unknown function | unknown function | -1 | 15560 | 15784 |
| ANI22059.1 | KU747973_p42 | hypothetical protein | phrog_32526 | unknown function | unknown function | -1 | 28441 | 28779 |
| ANI22075.1 | KU747973_p58 | hypothetical protein | phrog_1273 | unknown function | unknown function | -1 | 36248 | 36502 |
| ANI22062.1 | KU747973_p45 | hypothetical protein | phrog_17613 | ATPase | other | 1 | 29435 | 30181 |
| ANI22085.1 | KU747973_p68 | hypothetical protein | phrog_1407 | major tail protein | tail | 1 | 40723 | 41235 |
| ANI22033.1 | KU747973_p16 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 11987 | 12922 |
| ANI22088.1 | KU747973_p71 | tail length tape-measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 42370 | 44457 |
| ANI22037.1 | KU747973_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13870 | 14031 |
| ANI22058.1 | KU747973_p41 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 27004 | 28437 |
| ANI22038.1 | KU747973_p21 | hypothetical protein | phrog_5434 | unknown function | unknown function | -1 | 14031 | 14492 |
| ANI22020.1 | KU747973_p3 | tail protein | phrog_469 | tail protein | tail | 1 | 925 | 3390 |
| ANI22071.1 | KU747973_p54 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 34383 | 35615 |
| ANI22061.1 | KU747973_p44 | hypothetical protein | phrog_35724 | unknown function | unknown function | 1 | 29112 | 29435 |
| ANI22036.1 | KU747973_p19 | DNA-binding protein | phrog_715 | MazG-like pyrophosphatase | other | -1 | 13435 | 13857 |
| ANI22049.1 | KU747973_p32 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 21234 | 21626 |
| ANI22035.1 | KU747973_p18 | hypothetical protein | phrog_37169 | unknown function | unknown function | -1 | 13104 | 13442 |
| ANI22041.1 | KU747973_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15784 | 15984 |
| ANI22072.1 | KU747973_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35671 | 35844 |
| ANI22060.1 | KU747973_p43 | hypothetical protein | phrog_33658 | unknown function | unknown function | 1 | 28882 | 29112 |
| ANI22090.1 | KU747973_p73 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 44860 | 45306 |
| ANI22082.1 | KU747973_p65 | hypothetical protein | phrog_797 | unknown function | unknown function | 1 | 38921 | 39277 |
| ANI22077.1 | KU747973_p60 | hypothetical protein | phrog_924 | unknown function | unknown function | 1 | 37209 | 37424 |
| ANI22086.1 | KU747973_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41225 | 41641 |
| ANI22050.1 | KU747973_p33 | transcriptional regulator | phrog_35 | transcriptional repressor | transcription regulation | 1 | 21778 | 22017 |
| ANI22066.1 | KU747973_p49 | hypothetical protein | phrog_766 | head decoration | head and packaging | 1 | 31699 | 32148 |
| ANI22064.1 | KU747973_p47 | hypothetical protein | phrog_4004 | unknown function | unknown function | 1 | 30328 | 30504 |
| ANI22065.1 | KU747973_p48 | coat protein | phrog_760 | unknown function | unknown function | 1 | 30560 | 31687 |
| ANI22022.1 | KU747973_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5892 | 6689 |
| ANI22027.1 | KU747973_p10 | peptidase | phrog_465 | endolysin | lysis | -1 | 8442 | 8834 |
| ANI22084.1 | KU747973_p67 | hypothetical protein | phrog_782 | unknown function | unknown function | 1 | 39669 | 40118 |
| ANI22021.1 | KU747973_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3377 | 5878 |
| ANI22054.1 | KU747973_p37 | hypothetical protein | phrog_2315 | unknown function | unknown function | 1 | 25871 | 26173 |
| ANI22076.1 | KU747973_p59 | hypothetical protein | phrog_23168 | unknown function | unknown function | 1 | 36619 | 37212 |
| ANI22031.1 | KU747973_p14 | minor head protein | phrog_758 | head morphogenesis | head and packaging | -1 | 9482 | 10555 |
| ANI22068.1 | KU747973_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33241 | 33435 |
| ANI22047.1 | KU747973_p30 | hypothetical protein | phrog_2300 | unknown function | unknown function | -1 | 19843 | 20376 |
| ANI22069.1 | KU747973_p52 | hypothetical protein | phrog_4770 | unknown function | unknown function | 1 | 33531 | 33812 |
| ANI22034.1 | KU747973_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12919 | 13107 |
| ANI22063.1 | KU747973_p46 | hypothetical protein | phrog_20358 | unknown function | unknown function | 1 | 30165 | 30344 |
| ANI22073.1 | KU747973_p56 | hypothetical protein | phrog_14264 | unknown function | unknown function | -1 | 35846 | 36037 |
| ANI22045.1 | KU747973_p28 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 17066 | 18700 |
| ANI22074.1 | KU747973_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36038 | 36244 |
| ANI22043.1 | KU747973_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16155 | 16454 |
| ANI22028.1 | KU747973_p11 | hypothetical protein | phrog_37909 | unknown function | unknown function | -1 | 8831 | 8983 |
| ANI22019.1 | KU747973_p2 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 508 | 921 |
| ANI22067.1 | KU747973_p50 | coat protein | phrog_771 | virion structural protein | head and packaging | 1 | 32159 | 33226 |
| ANI22025.1 | KU747973_p8 | hypothetical protein | phrog_9646 | unknown function | unknown function | -1 | 7748 | 8230 |
| ANI22039.1 | KU747973_p22 | DNA-methyltransferase | phrog_116 | DNA methyltransferase | other | -1 | 14496 | 15563 |