| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KU885989 |
Definition |
Roseobacter phage RD-1410W1-01, partial genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Baltimorevirus; unclassified Baltimorevirus. |
DB of origin |
NUCCORE |
Length |
72674 |
Host Name |
Roseobacter denitrificans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
49.52 |
Number of singletons |
15 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANJ20764.1 | KU885989_p30 | hypothetical protein | phrog_7319 | unknown function | unknown function | 1 | 17778 | 17951 |
| ANJ20769.1 | KU885989_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21185 | 21388 |
| ANJ20735.1 | KU885989_p1 | virion protein | phrog_2125 | virion structural protein | head and packaging | -1 | 1 | 608 |
| ANJ20801.1 | KU885989_p67 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 60216 | 62921 |
| ANJ20754.1 | KU885989_p20 | hypothetical protein | phrog_28219 | unknown function | unknown function | 1 | 12290 | 12412 |
| ANJ20760.1 | KU885989_p26 | hypothetical protein | phrog_12776 | unknown function | unknown function | 1 | 14543 | 14764 |
| ANJ20792.1 | KU885989_p58 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41775 | 42770 |
| ANJ20782.1 | KU885989_p48 | rIIB-like protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 31639 | 33093 |
| ANJ20810.1 | KU885989_p76 | hypothetical protein | phrog_37731 | unknown function | unknown function | -1 | 71657 | 72247 |
| ANJ20800.1 | KU885989_p66 | virion protein | phrog_2646 | unknown function | unknown function | -1 | 59785 | 60204 |
| ANJ20780.1 | KU885989_p46 | hypothetical protein | phrog_2380 | unknown function | unknown function | 1 | 28779 | 29000 |
| ANJ20748.1 | KU885989_p14 | RNAP1 protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9939 | 10730 |
| ANJ20752.1 | KU885989_p18 | hypothetical protein | phrog_27133 | unknown function | unknown function | 1 | 11686 | 12075 |
| ANJ20763.1 | KU885989_p29 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 17416 | 17766 |
| ANJ20737.1 | KU885989_p3 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 2231 | 2932 |
| ANJ20803.1 | KU885989_p69 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 64290 | 65003 |
| ANJ20739.1 | KU885989_p5 | structural protein | phrog_12736 | virion structural protein | head and packaging | 1 | 3332 | 5593 |
| ANJ20793.1 | KU885989_p59 | DNA primase | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 42763 | 44955 |
| ANJ20775.1 | KU885989_p41 | hypothetical protein | phrog_18048 | unknown function | unknown function | 1 | 26923 | 27162 |
| ANJ20742.1 | KU885989_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7686 | 7931 |
| ANJ20743.1 | KU885989_p9 | hypothetical protein | phrog_14155 | unknown function | unknown function | 1 | 8184 | 8438 |
| ANJ20740.1 | KU885989_p6 | virion protein | phrog_6368 | unknown function | unknown function | 1 | 5625 | 6602 |
| ANJ20799.1 | KU885989_p65 | hypothetical protein | phrog_14527 | unknown function | unknown function | -1 | 57857 | 59773 |
| ANJ20789.1 | KU885989_p55 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 37593 | 38867 |
| ANJ20784.1 | KU885989_p50 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 33508 | 33882 |
| ANJ20809.1 | KU885989_p75 | hypothetical protein | phrog_5867 | endolysin | lysis | -1 | 71004 | 71657 |
| ANJ20804.1 | KU885989_p70 | major capsid protein | phrog_1357 | major head protein | head and packaging | -1 | 65132 | 66316 |
| ANJ20749.1 | KU885989_p15 | phosphate starvation protein PhoH | phrog_170 | PhoH-like phosphate starvation-inducible | other | 1 | 10727 | 11452 |
| ANJ20751.1 | KU885989_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11546 | 11701 |
| ANJ20802.1 | KU885989_p68 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 62924 | 64267 |
| ANJ20807.1 | KU885989_p73 | virion protein | phrog_1216 | portal protein | head and packaging | -1 | 68200 | 70491 |
| ANJ20756.1 | KU885989_p22 | hypothetical protein | phrog_18488 | unknown function | unknown function | 1 | 12596 | 12844 |
| ANJ20761.1 | KU885989_p27 | ATPase | phrog_1297 | ATPase | other | 1 | 14819 | 15997 |
| ANJ20777.1 | KU885989_p43 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 27751 | 28065 |
| ANJ20771.1 | KU885989_p37 | hypothetical protein | phrog_4368 | unknown function | unknown function | 1 | 21839 | 22345 |
| ANJ20765.1 | KU885989_p31 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 17962 | 19488 |
| ANJ20759.1 | KU885989_p25 | RNAP2 protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13272 | 14468 |
| ANJ20781.1 | KU885989_p47 | rIIA-like protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 29027 | 31618 |
| ANJ20791.1 | KU885989_p57 | DNA polymerase family A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 39160 | 41778 |
| ANJ20779.1 | KU885989_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28490 | 28696 |
| ANJ20808.1 | KU885989_p74 | hypothetical protein | phrog_27978 | unknown function | unknown function | -1 | 70700 | 70975 |
| ANJ20776.1 | KU885989_p42 | nucleoside triphosphate pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 27210 | 27770 |
| ANJ20768.1 | KU885989_p34 | hypothetical protein | phrog_1761 | unknown function | unknown function | 1 | 20980 | 21180 |
| ANJ20811.1 | KU885989_p77 | hypothetical protein | phrog_13075 | unknown function | unknown function | -1 | 72244 | 72549 |
| ANJ20796.1 | KU885989_p62 | endoribonuclease RusA | phrog_14238 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 46781 | 47527 |
| ANJ20766.1 | KU885989_p32 | metallophosphoesterase | phrog_20266 | metallo-phosphoesterase | other | 1 | 19541 | 20758 |
| ANJ20767.1 | KU885989_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20769 | 20990 |
| ANJ20738.1 | KU885989_p4 | virion protein | phrog_13099 | virion structural protein | head and packaging | 1 | 3006 | 3332 |
| ANJ20753.1 | KU885989_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12087 | 12293 |
| ANJ20750.1 | KU885989_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11439 | 11549 |
| ANJ20774.1 | KU885989_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24535 | 26913 |
| ANJ20805.1 | KU885989_p71 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 66357 | 67715 |
| ANJ20747.1 | KU885989_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9595 | 9933 |
| ANJ20746.1 | KU885989_p12 | hypothetical protein | phrog_4099 | unknown function | unknown function | 1 | 8958 | 9386 |
| ANJ20785.1 | KU885989_p51 | hypothetical protein | phrog_768 | DprA-like DNA recombination-mediator protein | DNA, RNA and nucleotide metabolism | 1 | 33879 | 34403 |
| ANJ20741.1 | KU885989_p7 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 6853 | 7194 |
| ANJ20790.1 | KU885989_p56 | hypothetical protein | phrog_6035 | unknown function | unknown function | 1 | 38864 | 39160 |
| ANJ20736.1 | KU885989_p2 | terminase subunit A | phrog_38 | terminase large subunit | head and packaging | -1 | 619 | 2238 |
| ANJ20755.1 | KU885989_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12409 | 12603 |
| ANJ20786.1 | KU885989_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34396 | 34746 |
| ANJ20772.1 | KU885989_p38 | hypothetical protein | phrog_4368 | unknown function | unknown function | 1 | 22350 | 22856 |
| ANJ20762.1 | KU885989_p28 | metallopeptidase domain containing protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16055 | 17335 |
| ANJ20757.1 | KU885989_p23 | hypothetical protein | phrog_13436 | unknown function | unknown function | 1 | 12831 | 13073 |
| ANJ20795.1 | KU885989_p61 | single-stranded DNA-binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 45771 | 46583 |
| ANJ20794.1 | KU885989_p60 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44966 | 45715 |
| ANJ20806.1 | KU885989_p72 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 67755 | 68144 |
| ANJ20773.1 | KU885989_p39 | virion protein | phrog_18179 | virion structural protein | head and packaging | 1 | 22877 | 24535 |
| ANJ20798.1 | KU885989_p64 | vRNAP protein | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 47737 | 57795 |
| ANJ20745.1 | KU885989_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8708 | 8911 |
| ANJ20758.1 | KU885989_p24 | hypothetical protein | phrog_14069 | unknown function | unknown function | 1 | 13078 | 13278 |
| ANJ20778.1 | KU885989_p44 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 28075 | 28500 |
| ANJ20788.1 | KU885989_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37261 | 37605 |
| ANJ20797.1 | KU885989_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47517 | 47684 |
| ANJ20783.1 | KU885989_p49 | HNH endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 33173 | 33511 |
| ANJ20787.1 | KU885989_p53 | class II ribonucleotide reductase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 34812 | 37211 |
| ANJ20770.1 | KU885989_p36 | virion protein | phrog_1627 | unknown function | unknown function | 1 | 21510 | 21842 |
| ANJ20744.1 | KU885989_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8503 | 8715 |