Genomic map of Roseobacter phage RD-1410W1-01 (KU885989)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KU885989
Definition
Roseobacter phage RD-1410W1-01, partial genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Baltimorevirus; unclassified Baltimorevirus.
DB of origin
NUCCORE
Length
72674
Host Name
Roseobacter denitrificans
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
49.52
Number of singletons
15
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ANJ20764.1 KU885989_p30 hypothetical protein phrog_7319 unknown function unknown function 1 17778 17951
ANJ20769.1 KU885989_p35 hypothetical protein singleton unknown function unknown function 1 21185 21388
ANJ20735.1 KU885989_p1 virion protein phrog_2125 virion structural protein head and packaging -1 1 608
ANJ20801.1 KU885989_p67 hypothetical protein phrog_2220 unknown function unknown function -1 60216 62921
ANJ20754.1 KU885989_p20 hypothetical protein phrog_28219 unknown function unknown function 1 12290 12412
ANJ20760.1 KU885989_p26 hypothetical protein phrog_12776 unknown function unknown function 1 14543 14764
ANJ20792.1 KU885989_p58 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 41775 42770
ANJ20782.1 KU885989_p48 rIIB-like protein phrog_2886 RIIB lysis inhibitor lysis 1 31639 33093
ANJ20810.1 KU885989_p76 hypothetical protein phrog_37731 unknown function unknown function -1 71657 72247
ANJ20800.1 KU885989_p66 virion protein phrog_2646 unknown function unknown function -1 59785 60204
ANJ20780.1 KU885989_p46 hypothetical protein phrog_2380 unknown function unknown function 1 28779 29000
ANJ20748.1 KU885989_p14 RNAP1 protein phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 9939 10730
ANJ20752.1 KU885989_p18 hypothetical protein phrog_27133 unknown function unknown function 1 11686 12075
ANJ20763.1 KU885989_p29 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 17416 17766
ANJ20737.1 KU885989_p3 hypothetical protein phrog_2109 unknown function unknown function -1 2231 2932
ANJ20803.1 KU885989_p69 hypothetical protein phrog_2130 unknown function unknown function -1 64290 65003
ANJ20739.1 KU885989_p5 structural protein phrog_12736 virion structural protein head and packaging 1 3332 5593
ANJ20793.1 KU885989_p59 DNA primase phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 42763 44955
ANJ20775.1 KU885989_p41 hypothetical protein phrog_18048 unknown function unknown function 1 26923 27162
ANJ20742.1 KU885989_p8 hypothetical protein singleton unknown function unknown function 1 7686 7931
ANJ20743.1 KU885989_p9 hypothetical protein phrog_14155 unknown function unknown function 1 8184 8438
ANJ20740.1 KU885989_p6 virion protein phrog_6368 unknown function unknown function 1 5625 6602
ANJ20799.1 KU885989_p65 hypothetical protein phrog_14527 unknown function unknown function -1 57857 59773
ANJ20789.1 KU885989_p55 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 37593 38867
ANJ20784.1 KU885989_p50 hypothetical protein phrog_2072 unknown function unknown function 1 33508 33882
ANJ20809.1 KU885989_p75 hypothetical protein phrog_5867 endolysin lysis -1 71004 71657
ANJ20804.1 KU885989_p70 major capsid protein phrog_1357 major head protein head and packaging -1 65132 66316
ANJ20749.1 KU885989_p15 phosphate starvation protein PhoH phrog_170 PhoH-like phosphate starvation-inducible other 1 10727 11452
ANJ20751.1 KU885989_p17 hypothetical protein singleton unknown function unknown function 1 11546 11701
ANJ20802.1 KU885989_p68 hypothetical protein phrog_2050 virion structural protein head and packaging -1 62924 64267
ANJ20807.1 KU885989_p73 virion protein phrog_1216 portal protein head and packaging -1 68200 70491
ANJ20756.1 KU885989_p22 hypothetical protein phrog_18488 unknown function unknown function 1 12596 12844
ANJ20761.1 KU885989_p27 ATPase phrog_1297 ATPase other 1 14819 15997
ANJ20777.1 KU885989_p43 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 27751 28065
ANJ20771.1 KU885989_p37 hypothetical protein phrog_4368 unknown function unknown function 1 21839 22345
ANJ20765.1 KU885989_p31 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 17962 19488
ANJ20759.1 KU885989_p25 RNAP2 protein phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 13272 14468
ANJ20781.1 KU885989_p47 rIIA-like protein phrog_2979 RIIA lysis inhibitor lysis 1 29027 31618
ANJ20791.1 KU885989_p57 DNA polymerase family A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 39160 41778
ANJ20779.1 KU885989_p45 hypothetical protein singleton unknown function unknown function 1 28490 28696
ANJ20808.1 KU885989_p74 hypothetical protein phrog_27978 unknown function unknown function -1 70700 70975
ANJ20776.1 KU885989_p42 nucleoside triphosphate pyrophosphohydrolase phrog_671 nucleotide pyrophosphohydrolase other 1 27210 27770
ANJ20768.1 KU885989_p34 hypothetical protein phrog_1761 unknown function unknown function 1 20980 21180
ANJ20811.1 KU885989_p77 hypothetical protein phrog_13075 unknown function unknown function -1 72244 72549
ANJ20796.1 KU885989_p62 endoribonuclease RusA phrog_14238 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 46781 47527
ANJ20766.1 KU885989_p32 metallophosphoesterase phrog_20266 metallo-phosphoesterase other 1 19541 20758
ANJ20767.1 KU885989_p33 hypothetical protein singleton unknown function unknown function 1 20769 20990
ANJ20738.1 KU885989_p4 virion protein phrog_13099 virion structural protein head and packaging 1 3006 3332
ANJ20753.1 KU885989_p19 hypothetical protein singleton unknown function unknown function 1 12087 12293
ANJ20750.1 KU885989_p16 hypothetical protein singleton unknown function unknown function 1 11439 11549
ANJ20774.1 KU885989_p40 hypothetical protein singleton unknown function unknown function 1 24535 26913
ANJ20805.1 KU885989_p71 hypothetical protein phrog_2120 tail length tape measure protein tail -1 66357 67715
ANJ20747.1 KU885989_p13 hypothetical protein singleton unknown function unknown function 1 9595 9933
ANJ20746.1 KU885989_p12 hypothetical protein phrog_4099 unknown function unknown function 1 8958 9386
ANJ20785.1 KU885989_p51 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism 1 33879 34403
ANJ20741.1 KU885989_p7 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 6853 7194
ANJ20790.1 KU885989_p56 hypothetical protein phrog_6035 unknown function unknown function 1 38864 39160
ANJ20736.1 KU885989_p2 terminase subunit A phrog_38 terminase large subunit head and packaging -1 619 2238
ANJ20755.1 KU885989_p21 hypothetical protein singleton unknown function unknown function 1 12409 12603
ANJ20786.1 KU885989_p52 hypothetical protein singleton unknown function unknown function 1 34396 34746
ANJ20772.1 KU885989_p38 hypothetical protein phrog_4368 unknown function unknown function 1 22350 22856
ANJ20762.1 KU885989_p28 metallopeptidase domain containing protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16055 17335
ANJ20757.1 KU885989_p23 hypothetical protein phrog_13436 unknown function unknown function 1 12831 13073
ANJ20795.1 KU885989_p61 single-stranded DNA-binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 45771 46583
ANJ20794.1 KU885989_p60 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 44966 45715
ANJ20806.1 KU885989_p72 hypothetical protein phrog_2346 unknown function unknown function -1 67755 68144
ANJ20773.1 KU885989_p39 virion protein phrog_18179 virion structural protein head and packaging 1 22877 24535
ANJ20798.1 KU885989_p64 vRNAP protein phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 47737 57795
ANJ20745.1 KU885989_p11 hypothetical protein singleton unknown function unknown function 1 8708 8911
ANJ20758.1 KU885989_p24 hypothetical protein phrog_14069 unknown function unknown function 1 13078 13278
ANJ20778.1 KU885989_p44 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 28075 28500
ANJ20788.1 KU885989_p54 hypothetical protein singleton unknown function unknown function 1 37261 37605
ANJ20797.1 KU885989_p63 hypothetical protein singleton unknown function unknown function 1 47517 47684
ANJ20783.1 KU885989_p49 HNH endonuclease phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 33173 33511
ANJ20787.1 KU885989_p53 class II ribonucleotide reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 34812 37211
ANJ20770.1 KU885989_p36 virion protein phrog_1627 unknown function unknown function 1 21510 21842
ANJ20744.1 KU885989_p10 hypothetical protein singleton unknown function unknown function 1 8503 8715