| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KU935729 |
Definition |
Mycobacterium phage SkinnyPete, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nclasvirinae; Redivirus; Mycobacterium virus Skinnyp. |
DB of origin |
NUCCORE |
Length |
43478 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
66.35 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AMU78467.1 | KU935729_p37 | hypothetical protein | phrog_9601 | unknown function | unknown function | 1 | 28060 | 28314 |
| AMU78492.1 | KU935729_p62 | hypothetical protein | phrog_3599 | unknown function | unknown function | 1 | 40161 | 40763 |
| AMU78477.1 | KU935729_p47 | hypothetical protein | phrog_4387 | unknown function | unknown function | 1 | 32845 | 33099 |
| AMU78495.1 | KU935729_p65 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 42144 | 42368 |
| AMU78442.1 | KU935729_p12 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7388 | 7807 |
| AMU78453.1 | KU935729_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 21425 | 21787 |
| AMU78465.1 | KU935729_p35 | hypothetical protein | phrog_10253 | unknown function | unknown function | 1 | 27573 | 27689 |
| AMU78434.1 | KU935729_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2263 | 3552 |
| AMU78481.1 | KU935729_p51 | hypothetical protein | phrog_23623 | unknown function | unknown function | 1 | 34230 | 34484 |
| AMU78468.1 | KU935729_p38 | hypothetical protein | phrog_15773 | unknown function | unknown function | 1 | 28311 | 29168 |
| AMU78496.1 | KU935729_p66 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 42308 | 42763 |
| AMU78478.1 | KU935729_p48 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 33096 | 33473 |
| AMU78448.1 | KU935729_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14990 | 16699 |
| AMU78459.1 | KU935729_p29 | hypothetical protein | phrog_17706 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 24714 | 25079 |
| AMU78458.1 | KU935729_p28 | hypothetical protein | phrog_8245 | HicB-like antitoxin | moron, auxiliary metabolic gene and host takeover | -1 | 24222 | 24617 |
| AMU78457.1 | KU935729_p27 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 23780 | 24148 |
| AMU78438.1 | KU935729_p8 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 5997 | 6482 |
| AMU78490.1 | KU935729_p60 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 39110 | 39271 |
| AMU78452.1 | KU935729_p22 | hypothetical protein | phrog_6374 | unknown function | unknown function | 1 | 21256 | 21408 |
| AMU78472.1 | KU935729_p42 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 29948 | 30178 |
| AMU78461.1 | KU935729_p31 | integrase | phrog_1 | integrase | integration and excision | -1 | 25478 | 26449 |
| AMU78431.1 | KU935729_p1 | hypothetical protein | phrog_6975 | unknown function | unknown function | 1 | 63 | 512 |
| AMU78445.1 | KU935729_p14 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 9081 | 9987 |
| AMU78489.1 | KU935729_p59 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 38970 | 39113 |
| AMU78450.1 | KU935729_p20 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 17557 | 20202 |
| AMU78436.1 | KU935729_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4389 | 5684 |
| AMU78486.1 | KU935729_p56 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 37623 | 38102 |
| AMU78463.1 | KU935729_p33 | HTH-XRE DNA-binding domain protein | phrog_4583 | transcriptional repressor | transcription regulation | 1 | 26960 | 27193 |
| AMU78494.1 | KU935729_p64 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 41335 | 42000 |
| AMU78464.1 | KU935729_p34 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 27190 | 27576 |
| AMU78469.1 | KU935729_p39 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 29165 | 29524 |
| AMU78455.1 | KU935729_p25 | lysin A | phrog_1519 | endolysin | lysis | 1 | 22021 | 23382 |
| AMU78439.1 | KU935729_p9 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 6479 | 6823 |
| AMU78475.1 | KU935729_p45 | ssDNA binding protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 31602 | 32585 |
| AMU78488.1 | KU935729_p58 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38506 | 38970 |
| AMU78482.1 | KU935729_p52 | DNA methyltransferase | phrog_116 | DNA methyltransferase | other | 1 | 34484 | 35998 |
| AMU78444.1 | KU935729_p15 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9081 | 9611 |
| AMU78491.1 | KU935729_p61 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 39271 | 40164 |
| AMU78446.1 | KU935729_p16 | tape measure protein | phrog_2337 | tail length tape measure protein | tail | 1 | 10169 | 13267 |
| AMU78437.1 | KU935729_p7 | hypothetical protein | phrog_7530 | unknown function | unknown function | 1 | 5753 | 6004 |
| AMU78476.1 | KU935729_p46 | hypothetical protein | phrog_15611 | unknown function | unknown function | 1 | 32582 | 32848 |
| AMU78497.1 | KU935729_p67 | HNH endonuclease | phrog_1385 | unknown function | unknown function | 1 | 42760 | 43005 |
| AMU78484.1 | KU935729_p54 | hypothetical protein | phrog_19256 | unknown function | unknown function | 1 | 36652 | 36867 |
| AMU78474.1 | KU935729_p44 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 30665 | 31612 |
| AMU78432.1 | KU935729_p2 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 509 | 2044 |
| AMU78483.1 | KU935729_p53 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 35995 | 36582 |
| AMU78470.1 | KU935729_p40 | hypothetical protein | phrog_11875 | unknown function | unknown function | 1 | 29521 | 29730 |
| AMU78454.1 | KU935729_p24 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 21787 | 21951 |
| AMU78480.1 | KU935729_p50 | DnaQ-like exonuclease | phrog_2259 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 33679 | 34233 |
| AMU78487.1 | KU935729_p57 | hypothetical protein | phrog_11559 | unknown function | unknown function | 1 | 38099 | 38302 |
| AMU78433.1 | KU935729_p3 | hypothetical protein | phrog_6750 | unknown function | unknown function | 1 | 2061 | 2246 |
| AMU78441.1 | KU935729_p11 | head-to-tail connector | phrog_2325 | minor tail protein | tail | 1 | 7020 | 7391 |
| AMU78449.1 | KU935729_p19 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16715 | 17557 |
| AMU78456.1 | KU935729_p26 | holin | phrog_526 | holin | lysis | 1 | 23379 | 23783 |
| AMU78473.1 | KU935729_p43 | hypothetical protein | phrog_14059 | unknown function | unknown function | 1 | 30189 | 30668 |
| AMU78451.1 | KU935729_p21 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 20204 | 21241 |
| AMU78447.1 | KU935729_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13269 | 14990 |
| AMU78493.1 | KU935729_p63 | hypothetical protein | phrog_15405 | unknown function | unknown function | 1 | 40760 | 41338 |
| AMU78485.1 | KU935729_p55 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 36884 | 37558 |
| AMU78460.1 | KU935729_p30 | hypothetical protein | phrog_1712 | unknown function | unknown function | -1 | 25103 | 25444 |
| AMU78466.1 | KU935729_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27751 | 28002 |
| AMU78435.1 | KU935729_p5 | capsid maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 3555 | 4361 |
| AMU78443.1 | KU935729_p13 | major tail protein | phrog_476 | major tail protein | tail | 1 | 7923 | 8981 |
| AMU78471.1 | KU935729_p41 | hypothetical protein | phrog_36253 | unknown function | unknown function | 1 | 29727 | 29882 |
| AMU78462.1 | KU935729_p32 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 26455 | 26862 |
| AMU78479.1 | KU935729_p49 | hypothetical protein | phrog_10863 | unknown function | unknown function | 1 | 33470 | 33682 |
| AMU78440.1 | KU935729_p10 | hypothetical protein | phrog_8006 | neck protein | connector | 1 | 6836 | 7033 |