Genomic map of Mycobacterium phage SkinnyPete (KU935729)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KU935729
Definition
Mycobacterium phage SkinnyPete, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nclasvirinae; Redivirus; Mycobacterium virus Skinnyp.
DB of origin
NUCCORE
Length
43478
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
66.35
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AMU78467.1 KU935729_p37 hypothetical protein phrog_9601 unknown function unknown function 1 28060 28314
AMU78492.1 KU935729_p62 hypothetical protein phrog_3599 unknown function unknown function 1 40161 40763
AMU78477.1 KU935729_p47 hypothetical protein phrog_4387 unknown function unknown function 1 32845 33099
AMU78495.1 KU935729_p65 hypothetical protein phrog_1694 unknown function unknown function 1 42144 42368
AMU78442.1 KU935729_p12 hypothetical protein phrog_813 head-tail adaptor connector 1 7388 7807
AMU78453.1 KU935729_p23 hypothetical protein phrog_240 head protein head and packaging 1 21425 21787
AMU78465.1 KU935729_p35 hypothetical protein phrog_10253 unknown function unknown function 1 27573 27689
AMU78434.1 KU935729_p4 portal protein phrog_12 portal protein head and packaging 1 2263 3552
AMU78481.1 KU935729_p51 hypothetical protein phrog_23623 unknown function unknown function 1 34230 34484
AMU78468.1 KU935729_p38 hypothetical protein phrog_15773 unknown function unknown function 1 28311 29168
AMU78496.1 KU935729_p66 hypothetical protein phrog_1186 unknown function unknown function 1 42308 42763
AMU78478.1 KU935729_p48 hypothetical protein phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 33096 33473
AMU78448.1 KU935729_p18 minor tail protein phrog_110 minor tail protein tail 1 14990 16699
AMU78459.1 KU935729_p29 hypothetical protein phrog_17706 membrane protein moron, auxiliary metabolic gene and host takeover -1 24714 25079
AMU78458.1 KU935729_p28 hypothetical protein phrog_8245 HicB-like antitoxin moron, auxiliary metabolic gene and host takeover -1 24222 24617
AMU78457.1 KU935729_p27 hypothetical protein phrog_404 minor tail protein tail 1 23780 24148
AMU78438.1 KU935729_p8 hypothetical protein phrog_442 head-tail adaptor connector 1 5997 6482
AMU78490.1 KU935729_p60 hypothetical protein phrog_2451 unknown function unknown function 1 39110 39271
AMU78452.1 KU935729_p22 hypothetical protein phrog_6374 unknown function unknown function 1 21256 21408
AMU78472.1 KU935729_p42 WhiB family transcription factor phrog_472 WhiB transcriptional factor transcription regulation 1 29948 30178
AMU78461.1 KU935729_p31 integrase phrog_1 integrase integration and excision -1 25478 26449
AMU78431.1 KU935729_p1 hypothetical protein phrog_6975 unknown function unknown function 1 63 512
AMU78445.1 KU935729_p14 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 9081 9987
AMU78489.1 KU935729_p59 hypothetical protein phrog_1311 unknown function unknown function 1 38970 39113
AMU78450.1 KU935729_p20 minor tail protein phrog_746 minor tail protein tail 1 17557 20202
AMU78436.1 KU935729_p6 major capsid protein phrog_10 major head protein head and packaging 1 4389 5684
AMU78486.1 KU935729_p56 hypothetical protein phrog_2060 DNA methyltransferase other 1 37623 38102
AMU78463.1 KU935729_p33 HTH-XRE DNA-binding domain protein phrog_4583 transcriptional repressor transcription regulation 1 26960 27193
AMU78494.1 KU935729_p64 hypothetical protein phrog_908 unknown function unknown function 1 41335 42000
AMU78464.1 KU935729_p34 hypothetical protein phrog_3507 unknown function unknown function 1 27190 27576
AMU78469.1 KU935729_p39 hypothetical protein phrog_658 unknown function unknown function 1 29165 29524
AMU78455.1 KU935729_p25 lysin A phrog_1519 endolysin lysis 1 22021 23382
AMU78439.1 KU935729_p9 hypothetical protein phrog_1531 head closure connector 1 6479 6823
AMU78475.1 KU935729_p45 ssDNA binding protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 31602 32585
AMU78488.1 KU935729_p58 hypothetical protein phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38506 38970
AMU78482.1 KU935729_p52 DNA methyltransferase phrog_116 DNA methyltransferase other 1 34484 35998
AMU78444.1 KU935729_p15 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 9081 9611
AMU78491.1 KU935729_p61 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 39271 40164
AMU78446.1 KU935729_p16 tape measure protein phrog_2337 tail length tape measure protein tail 1 10169 13267
AMU78437.1 KU935729_p7 hypothetical protein phrog_7530 unknown function unknown function 1 5753 6004
AMU78476.1 KU935729_p46 hypothetical protein phrog_15611 unknown function unknown function 1 32582 32848
AMU78497.1 KU935729_p67 HNH endonuclease phrog_1385 unknown function unknown function 1 42760 43005
AMU78484.1 KU935729_p54 hypothetical protein phrog_19256 unknown function unknown function 1 36652 36867
AMU78474.1 KU935729_p44 exonuclease phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 30665 31612
AMU78432.1 KU935729_p2 terminase phrog_9 terminase large subunit head and packaging 1 509 2044
AMU78483.1 KU935729_p53 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 35995 36582
AMU78470.1 KU935729_p40 hypothetical protein phrog_11875 unknown function unknown function 1 29521 29730
AMU78454.1 KU935729_p24 hypothetical protein phrog_1172 unknown function unknown function 1 21787 21951
AMU78480.1 KU935729_p50 DnaQ-like exonuclease phrog_2259 Rnase H DNA, RNA and nucleotide metabolism 1 33679 34233
AMU78487.1 KU935729_p57 hypothetical protein phrog_11559 unknown function unknown function 1 38099 38302
AMU78433.1 KU935729_p3 hypothetical protein phrog_6750 unknown function unknown function 1 2061 2246
AMU78441.1 KU935729_p11 head-to-tail connector phrog_2325 minor tail protein tail 1 7020 7391
AMU78449.1 KU935729_p19 minor tail protein phrog_732 minor tail protein tail 1 16715 17557
AMU78456.1 KU935729_p26 holin phrog_526 holin lysis 1 23379 23783
AMU78473.1 KU935729_p43 hypothetical protein phrog_14059 unknown function unknown function 1 30189 30668
AMU78451.1 KU935729_p21 hypothetical protein phrog_416 minor tail protein tail 1 20204 21241
AMU78447.1 KU935729_p17 minor tail protein phrog_106 minor tail protein tail 1 13269 14990
AMU78493.1 KU935729_p63 hypothetical protein phrog_15405 unknown function unknown function 1 40760 41338
AMU78485.1 KU935729_p55 hypothetical protein phrog_722 unknown function unknown function 1 36884 37558
AMU78460.1 KU935729_p30 hypothetical protein phrog_1712 unknown function unknown function -1 25103 25444
AMU78466.1 KU935729_p36 hypothetical protein singleton unknown function unknown function 1 27751 28002
AMU78435.1 KU935729_p5 capsid maturation protease phrog_80 head maturation protease head and packaging 1 3555 4361
AMU78443.1 KU935729_p13 major tail protein phrog_476 major tail protein tail 1 7923 8981
AMU78471.1 KU935729_p41 hypothetical protein phrog_36253 unknown function unknown function 1 29727 29882
AMU78462.1 KU935729_p32 immunity repressor phrog_2328 transcriptional repressor transcription regulation -1 26455 26862
AMU78479.1 KU935729_p49 hypothetical protein phrog_10863 unknown function unknown function 1 33470 33682
AMU78440.1 KU935729_p10 hypothetical protein phrog_8006 neck protein connector 1 6836 7033