Genomic map of Mycobacterium phage Pipsqueaks (KU935730)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KU935730
Definition
Mycobacterium phage Pipsqueaks, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nclasvirinae; Charlievirus; Mycobacterium virus Pipsqueaks.
DB of origin
NUCCORE
Length
43679
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
73
%GC
66.27
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AMS02208.1 KU935730_p55 hypothetical protein phrog_19256 unknown function unknown function 1 35859 36158
AMS02218.1 KU935730_p65 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 39502 40395
AMS02219.1 KU935730_p66 hypothetical protein phrog_3599 unknown function unknown function 1 40392 40994
AMS02212.1 KU935730_p59 hypothetical protein phrog_647 unknown function unknown function 1 37516 37878
AMS02188.1 KU935730_p35 hypothetical protein phrog_1712 unknown function unknown function -1 27369 27710
AMS02158.1 KU935730_p5 capsid maturation protease phrog_80 head maturation protease head and packaging 1 3538 4344
AMS02155.1 KU935730_p2 terminase phrog_9 terminase large subunit head and packaging 1 501 2036
AMS02217.1 KU935730_p64 hypothetical protein phrog_2451 unknown function unknown function 1 39341 39502
AMS02224.1 KU935730_p71 hypothetical protein phrog_1186 unknown function unknown function 1 42517 42972
AMS02210.1 KU935730_p57 hypothetical protein phrog_20215 unknown function unknown function 1 36660 36962
AMS02198.1 KU935730_p45 WhiB family transcription factor phrog_1333 unknown function unknown function 1 31718 32101
AMS02169.1 KU935730_p16 tape measure protein phrog_2337 tail length tape measure protein tail 1 10123 13266
AMS02222.1 KU935730_p69 hypothetical protein phrog_908 unknown function unknown function 1 41565 42230
AMS02174.1 KU935730_p21 hypothetical protein phrog_14065 unknown function unknown function 1 19550 20191
AMS02176.1 KU935730_p23 hypothetical protein phrog_6443 unknown function unknown function 1 21446 21742
AMS02191.1 KU935730_p38 excise phrog_4583 transcriptional repressor transcription regulation 1 29226 29459
AMS02162.1 KU935730_p9 head-to-tail connector phrog_1531 head closure connector 1 6438 6782
AMS02194.1 KU935730_p41 hypothetical protein phrog_9601 unknown function unknown function 1 30396 30650
AMS02170.1 KU935730_p17 minor tail protein phrog_106 minor tail protein tail 1 13268 14989
AMS02183.1 KU935730_p30 hypothetical protein phrog_404 minor tail protein tail 1 24740 25120
AMS02226.1 KU935730_p73 HNH endonuclease phrog_1808 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43192 43491
AMS02195.1 KU935730_p42 hypothetical protein phrog_549 unknown function unknown function 1 30647 31045
AMS02160.1 KU935730_p7 head-to-tail connector phrog_7530 unknown function unknown function 1 5730 5963
AMS02206.1 KU935730_p53 hypothetical protein singleton unknown function unknown function 1 35564 35704
AMS02179.1 KU935730_p26 hypothetical protein phrog_6832 unknown function unknown function 1 22348 22533
AMS02193.1 KU935730_p40 hypothetical protein phrog_5081 unknown function unknown function 1 29952 30338
AMS02199.1 KU935730_p46 hypothetical protein phrog_11506 unknown function unknown function 1 32098 32442
AMS02173.1 KU935730_p20 minor tail protein phrog_3493 minor tail protein tail 1 17556 19550
AMS02187.1 KU935730_p34 hypothetical protein phrog_16337 membrane protein moron, auxiliary metabolic gene and host takeover -1 26799 27326
AMS02197.1 KU935730_p44 hypothetical protein phrog_8273 unknown function unknown function 1 31449 31721
AMS02190.1 KU935730_p37 immunity repressor phrog_2328 transcriptional repressor transcription regulation -1 28721 29128
AMS02161.1 KU935730_p8 head-to-tail connector phrog_442 head-tail adaptor connector 1 5956 6441
AMS02204.1 KU935730_p51 hypothetical protein phrog_3821 unknown function unknown function 1 35147 35422
AMS02163.1 KU935730_p10 head-to-tail connector phrog_8006 neck protein connector 1 6794 6988
AMS02186.1 KU935730_p33 hypothetical protein phrog_16062 unknown function unknown function -1 26488 26685
AMS02178.1 KU935730_p25 hypothetical protein phrog_1172 unknown function unknown function 1 22166 22348
AMS02159.1 KU935730_p6 major capsid protein phrog_10 major head protein head and packaging 1 4372 5664
AMS02165.1 KU935730_p12 head-to-tail connector phrog_813 head-tail adaptor connector 1 7343 7762
AMS02213.1 KU935730_p60 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 37875 38213
AMS02177.1 KU935730_p24 hypothetical protein phrog_3758 virion structural protein head and packaging 1 21744 22169
AMS02207.1 KU935730_p54 hypothetical protein phrog_21446 unknown function unknown function 1 35701 35865
AMS02215.1 KU935730_p62 HNH endonuclease phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38737 39201
AMS02216.1 KU935730_p63 hypothetical protein phrog_1311 unknown function unknown function 1 39201 39344
AMS02203.1 KU935730_p50 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 34902 35150
AMS02154.1 KU935730_p1 hypothetical protein phrog_6975 unknown function unknown function 1 64 504
AMS02175.1 KU935730_p22 minor tail protein phrog_17035 minor tail protein tail 1 20220 21437
AMS02182.1 KU935730_p29 holin phrog_526 holin lysis 1 24339 24743
AMS02172.1 KU935730_p19 minor tail protein phrog_732 minor tail protein tail 1 16714 17556
AMS02189.1 KU935730_p36 integrase phrog_1 integrase integration and excision -1 27744 28715
AMS02201.1 KU935730_p48 ssDNA binding protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33455 34516
AMS02184.1 KU935730_p31 hypothetical protein singleton unknown function unknown function 1 25749 26303
AMS02180.1 KU935730_p27 hypothetical protein phrog_747 unknown function unknown function 1 22565 22837
AMS02200.1 KU935730_p47 exonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 32439 33449
AMS02192.1 KU935730_p39 hypothetical protein phrog_3507 unknown function unknown function 1 29456 29842
AMS02196.1 KU935730_p43 hypothetical protein phrog_16008 unknown function unknown function 1 31042 31452
AMS02205.1 KU935730_p52 hypothetical protein phrog_11218 unknown function unknown function 1 35419 35628
AMS02181.1 KU935730_p28 lysin A phrog_1519 endolysin lysis 1 22834 24342
AMS02168.1 KU935730_p14 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 9036 9942
AMS02171.1 KU935730_p18 minor tail protein phrog_110 minor tail protein tail 1 14989 16698
AMS02214.1 KU935730_p61 hypothetical protein phrog_2021 unknown function unknown function 1 38215 38589
AMS02156.1 KU935730_p3 hypothetical protein phrog_6750 unknown function unknown function 1 2029 2235
AMS02167.1 KU935730_p15 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 9036 9566
AMS02185.1 KU935730_p32 hypothetical protein phrog_12868 unknown function unknown function 1 26263 26466
AMS02211.1 KU935730_p58 hypothetical protein phrog_26354 unknown function unknown function 1 36959 37519
AMS02202.1 KU935730_p49 DNA binding protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 34513 34905
AMS02221.1 KU935730_p68 hypothetical protein phrog_14001 unknown function unknown function 1 41236 41568
AMS02209.1 KU935730_p56 hypothetical protein phrog_419 unknown function unknown function 1 36265 36663
AMS02220.1 KU935730_p67 hypothetical protein phrog_6821 unknown function unknown function 1 40991 41239
AMS02225.1 KU935730_p72 hypothetical protein phrog_1385 unknown function unknown function 1 42969 43214
AMS02166.1 KU935730_p13 major tail protein phrog_476 major tail protein tail 1 7877 8935
AMS02223.1 KU935730_p70 hypothetical protein phrog_1694 unknown function unknown function 1 42353 42577
AMS02164.1 KU935730_p11 head-to-tail connector phrog_2325 minor tail protein tail 1 6975 7346
AMS02157.1 KU935730_p4 portal protein phrog_12 portal protein head and packaging 1 2249 3538