Genomic map of Staphylococcus phage pSco-10 (KX011028)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX011028
Definition
Staphylococcus phage pSco-10, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Kayvirus; unclassified Kayvirus.
DB of origin
NUCCORE
Length
101986
Host Name
Staphylococcus cohnii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
131
%GC
31.11
Number of singletons
2
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ANH50434.1 KX011028_p23 hypothetical protein phrog_3128 unknown function unknown function -1 10694 10990
ANH50436.1 KX011028_p25 hypothetical protein phrog_4009 unknown function unknown function -1 11171 11419
ANH50483.1 KX011028_p72 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 41484 42551
ANH50536.1 KX011028_p125 terminase phrog_675 terminase large subunit head and packaging -1 98002 99054
ANH50539.1 KX011028_p128 membrane protein phrog_5547 membrane protein moron, auxiliary metabolic gene and host takeover -1 99732 99998
ANH50444.1 KX011028_p33 hypothetical protein phrog_2726 unknown function unknown function -1 14255 14965
ANH50525.1 KX011028_p114 hypothetical protein phrog_9084 homing endonuclease DNA, RNA and nucleotide metabolism -1 89754 90278
ANH50491.1 KX011028_p80 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 50207 51955
ANH50512.1 KX011028_p101 hypothetical protein phrog_2701 unknown function unknown function -1 78204 78341
ANH50481.1 KX011028_p70 hypothetical protein phrog_1095 unknown function unknown function -1 40626 41078
ANH50416.1 KX011028_p5 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 3736 4515
ANH50414.1 KX011028_p3 hypothetical protein phrog_23628 unknown function unknown function -1 2715 3050
ANH50517.1 KX011028_p106 hypothetical protein phrog_1000 unknown function unknown function -1 82644 83480
ANH50493.1 KX011028_p82 hypothetical protein phrog_2671 tail fiber protein tail -1 53424 53798
ANH50468.1 KX011028_p57 DNA polymerase phrog_4008 DNA polymerase DNA, RNA and nucleotide metabolism -1 31783 32655
ANH50469.1 KX011028_p58 hypothetical protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism -1 32731 33036
ANH50494.1 KX011028_p83 capsid and scaffold protein phrog_2665 virion structural protein head and packaging -1 53812 55725
ANH50427.1 KX011028_p16 hypothetical protein phrog_467 unknown function unknown function -1 8312 8740
ANH50423.1 KX011028_p12 hypothetical protein phrog_22787 membrane protein moron, auxiliary metabolic gene and host takeover -1 7111 7341
ANH50518.1 KX011028_p107 hypothetical protein phrog_1127 unknown function unknown function -1 83499 84119
ANH50438.1 KX011028_p27 hypothetical protein phrog_6850 unknown function unknown function -1 12160 12372
ANH50475.1 KX011028_p64 endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism -1 36764 37345
ANH50486.1 KX011028_p75 exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 43743 45662
ANH50527.1 KX011028_p116 portal protein phrog_12 portal protein head and packaging -1 90699 92393
ANH50524.1 KX011028_p113 prohead protease phrog_1028 head maturation protease head and packaging -1 88787 89560
ANH50515.1 KX011028_p104 major tail sheath protein phrog_279 tail sheath tail -1 80637 82400
ANH50497.1 KX011028_p86 structural protein phrog_1394 virion structural protein head and packaging -1 59410 59931
ANH50534.1 KX011028_p123 terminase phrog_675 terminase large subunit head and packaging -1 95954 96724
ANH50425.1 KX011028_p14 hypothetical protein singleton unknown function unknown function -1 7950 8129
ANH50506.1 KX011028_p95 tail lysin phrog_1047 tail associated lysin tail -1 71769 75896
ANH50443.1 KX011028_p32 membrane protein phrog_2863 unknown function unknown function -1 13793 14191
ANH50477.1 KX011028_p66 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 38095 38763
ANH50495.1 KX011028_p84 hypothetical protein phrog_1074 unknown function unknown function -1 55726 55884
ANH50532.1 KX011028_p121 hypothetical protein phrog_3863 unknown function unknown function -1 94980 95153
ANH50489.1 KX011028_p78 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 47147 48589
ANH50521.1 KX011028_p110 hypothetical protein phrog_1205 unknown function unknown function -1 85932 86228
ANH50490.1 KX011028_p79 replication protein phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 48582 50195
ANH50474.1 KX011028_p63 ribonucleotide reductase phrog_3844 NrdA-like aerobic NDP reductase large subunit moron, auxiliary metabolic gene and host takeover -1 35564 36346
ANH50439.1 KX011028_p28 hypothetical protein phrog_6867 unknown function unknown function -1 12386 12634
ANH50430.1 KX011028_p19 membrane protein phrog_3804 unknown function unknown function -1 9480 9752
ANH50487.1 KX011028_p76 hypothetical protein phrog_2773 unknown function unknown function -1 45662 46039
ANH50431.1 KX011028_p20 hypothetical protein phrog_2988 unknown function unknown function -1 9758 10105
ANH50500.1 KX011028_p89 baseplate protein phrog_975 baseplate protein tail -1 63682 64386
ANH50496.1 KX011028_p85 tail protein phrog_877 unknown function unknown function -1 55928 59389
ANH50428.1 KX011028_p17 hypothetical protein phrog_3752 unknown function unknown function -1 8740 9090
ANH50452.1 KX011028_p41 hypothetical protein phrog_3644 unknown function unknown function -1 19703 20014
ANH50472.1 KX011028_p61 hypothetical protein phrog_2797 unknown function unknown function -1 34154 34483
ANH50433.1 KX011028_p22 membrane protein phrog_3640 membrane protein moron, auxiliary metabolic gene and host takeover -1 10459 10641
ANH50463.1 KX011028_p52 hypothetical protein phrog_2672 unknown function unknown function -1 26606 27778
ANH50473.1 KX011028_p62 ribonucleotide reductase phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 34501 35550
ANH50523.1 KX011028_p112 hypothetical protein phrog_1133 unknown function unknown function -1 87827 88768
ANH50461.1 KX011028_p50 hypothetical protein phrog_1089 unknown function unknown function -1 24933 25286
ANH50501.1 KX011028_p90 structural protein phrog_1073 unknown function unknown function -1 64386 64910
ANH50456.1 KX011028_p45 hypothetical protein phrog_2673 unknown function unknown function -1 22385 22645
ANH50466.1 KX011028_p55 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28675 30969
ANH50529.1 KX011028_p118 membrane protein phrog_7555 unknown function unknown function -1 92774 92968
ANH50426.1 KX011028_p15 hypothetical protein phrog_3701 unknown function unknown function -1 8132 8311
ANH50537.1 KX011028_p126 hypothetical protein phrog_1063 terminase small subunit head and packaging -1 99069 99479
ANH50471.1 KX011028_p60 thioredoxin-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 33850 34170
ANH50465.1 KX011028_p54 hypothetical protein phrog_3621 unknown function unknown function -1 28364 28606
ANH50514.1 KX011028_p103 tail protein phrog_985 virion structural protein head and packaging -1 80220 80564
ANH50420.1 KX011028_p9 hypothetical protein phrog_654 unknown function unknown function -1 5762 6067
ANH50502.1 KX011028_p91 structural protein phrog_1011 virion structural protein head and packaging -1 64910 65701
ANH50457.1 KX011028_p46 major tail protein phrog_1696 major tail protein tail -1 22741 22977
ANH50419.1 KX011028_p8 hypothetical protein phrog_6562 unknown function unknown function -1 5355 5762
ANH50478.1 KX011028_p67 ribonucleotide reductase phrog_6132 ribonucleotide reductase large subunit DNA, RNA and nucleotide metabolism -1 38882 39607
ANH50541.1 KX011028_p130 hypothetical protein phrog_937 hemolysin other 1 100896 101228
ANH50503.1 KX011028_p92 structural protein phrog_2204 glycerophosphoryl diester phosphodiesterase other -1 65808 68363
ANH50445.1 KX011028_p34 hypothetical protein phrog_1303 DNA binding protein DNA, RNA and nucleotide metabolism -1 14982 15425
ANH50455.1 KX011028_p44 hypothetical protein phrog_2721 unknown function unknown function -1 21626 22381
ANH50479.1 KX011028_p68 ribonucleotide reductase phrog_883 flavodoxin moron, auxiliary metabolic gene and host takeover -1 39622 40014
ANH50453.1 KX011028_p42 membrane protein phrog_2892 unknown function unknown function -1 20001 20369
ANH50447.1 KX011028_p36 hypothetical protein phrog_1007 unknown function unknown function -1 15966 16697
ANH50511.1 KX011028_p100 hypothetical protein phrog_1905 unknown function unknown function -1 77709 78161
ANH50462.1 KX011028_p51 DNA repair protein phrog_97 UvsX-like recombinase other -1 25290 26546
ANH50437.1 KX011028_p26 membrane protein phrog_3854 ribulose-1;5-bisphosphate carboxylase/oxygenase small subunit moron, auxiliary metabolic gene and host takeover -1 11436 12080
ANH50492.1 KX011028_p81 tail fiber protein phrog_2691 tail fiber protein tail -1 52044 53417
ANH50435.1 KX011028_p24 hypothetical protein phrog_3524 unknown function unknown function -1 10983 11159
ANH50415.1 KX011028_p4 hypothetical protein phrog_4637 unknown function unknown function -1 3336 3704
ANH50507.1 KX011028_p96 tail morphogenetic protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism -1 75952 76488
ANH50533.1 KX011028_p122 structural protein phrog_1917 virion structural protein head and packaging -1 95140 95940
ANH50498.1 KX011028_p87 tail morphogenetic protein phrog_2386 virion structural protein head and packaging -1 60042 62600
ANH50542.1 KX011028_p131 hypothetical protein phrog_1215 unknown function unknown function 1 101241 101450
ANH50417.1 KX011028_p6 hypothetical protein phrog_7235 unknown function unknown function -1 4574 4768
ANH50413.1 KX011028_p2 hypothetical protein phrog_4538 unknown function unknown function -1 1154 2635
ANH50485.1 KX011028_p74 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 43162 43743
ANH50519.1 KX011028_p108 capsid protein phrog_1004 virion structural protein head and packaging -1 84119 84997
ANH50520.1 KX011028_p109 hypothetical protein phrog_772 tail fiber protein tail -1 85011 85919
ANH50528.1 KX011028_p117 portal protein phrog_1108 portal protein head and packaging -1 92397 92768
ANH50531.1 KX011028_p120 hypothetical protein phrog_1116 unknown function unknown function -1 94504 94983
ANH50442.1 KX011028_p31 hypothetical protein phrog_3157 unknown function unknown function -1 13401 13643
ANH50464.1 KX011028_p53 hypothetical protein phrog_1069 unknown function unknown function -1 27865 28347
ANH50538.1 KX011028_p127 hypothetical protein phrog_1321 unknown function unknown function -1 99476 99754
ANH50460.1 KX011028_p49 RNA polymerase phrog_1025 RNA polymerase sigma factor transcription regulation -1 24284 24946
ANH50449.1 KX011028_p38 hypothetical protein phrog_2356 unknown function unknown function -1 17919 18365
ANH50446.1 KX011028_p35 hypothetical protein phrog_1104 virion structural protein head and packaging -1 15490 15948
ANH50516.1 KX011028_p105 hypothetical protein phrog_1151 unknown function unknown function -1 82427 82642
ANH50522.1 KX011028_p111 capsid protein phrog_752 major head protein head and packaging -1 86320 87711
ANH50459.1 KX011028_p48 Ig-like protein phrog_1240 Ig domain containing protein other -1 23525 24157
ANH50421.1 KX011028_p10 hypothetical protein phrog_14215 unknown function unknown function -1 6145 6810
ANH50499.1 KX011028_p88 tail protein phrog_6 baseplate wedge subunit tail -1 62621 63667
ANH50451.1 KX011028_p40 hypothetical protein phrog_1080 unknown function unknown function -1 19103 19639
ANH50418.1 KX011028_p7 hypothetical protein phrog_547 phosphoesterase other -1 4846 5352
ANH50484.1 KX011028_p73 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover -1 42566 43162
ANH50480.1 KX011028_p69 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 40031 40639
ANH50509.1 KX011028_p98 hypothetical protein phrog_2754 virion structural protein head and packaging -1 77120 77431
ANH50540.1 KX011028_p129 membrane protein phrog_1481 unknown function unknown function 1 100557 100883
ANH50440.1 KX011028_p29 hypothetical protein phrog_3664 DNA sliding clamp inhibitor; arrest of S.aureus DNA synthesis DNA, RNA and nucleotide metabolism -1 12627 12803
ANH50482.1 KX011028_p71 hypothetical protein phrog_1291 unknown function unknown function -1 41078 41416
ANH50467.1 KX011028_p56 hypothetical protein phrog_2340 endonuclease DNA, RNA and nucleotide metabolism -1 31105 31617
ANH50448.1 KX011028_p37 hypothetical protein phrog_1113 unknown function unknown function -1 17056 17919
ANH50530.1 KX011028_p119 membrane protein phrog_3094 unknown function unknown function -1 93206 94411
ANH50526.1 KX011028_p115 homing endonuclease singleton unknown function unknown function -1 90259 90678
ANH50450.1 KX011028_p39 hypothetical protein phrog_984 unknown function unknown function -1 18343 19110
ANH50505.1 KX011028_p94 tail lysin phrog_1015 tail protein with lysin activity tail -1 69264 71690
ANH50422.1 KX011028_p11 hypothetical protein phrog_4584 carboxypeptidase other -1 6827 7099
ANH50513.1 KX011028_p102 intron-encoded nuclease phrog_7140 intron encoded nuclease DNA, RNA and nucleotide metabolism -1 78395 79399
ANH50454.1 KX011028_p43 DNA repair exonuclease phrog_284 exonuclease DNA, RNA and nucleotide metabolism -1 20383 21633
ANH50424.1 KX011028_p13 membrane protein phrog_1486 membrane protein moron, auxiliary metabolic gene and host takeover -1 7343 7753
ANH50458.1 KX011028_p47 major tail protein phrog_341 major tail protein tail -1 22992 23504
ANH50535.1 KX011028_p124 homing endonuclease phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism -1 96809 97747
ANH50476.1 KX011028_p65 ribonucleotide reductase phrog_22953 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 37456 37845
ANH50470.1 KX011028_p59 hypothetical protein phrog_1054 unknown function unknown function -1 33046 33642
ANH50441.1 KX011028_p30 hypothetical protein phrog_5958 unknown function unknown function -1 12839 13396
ANH50508.1 KX011028_p97 hypothetical protein phrog_1038 tail assembly chaperone tail -1 76532 76987
ANH50412.1 KX011028_p1 hypothetical protein phrog_16491 unknown function unknown function -1 79 630
ANH50429.1 KX011028_p18 hypothetical protein phrog_3143 unknown function unknown function -1 9105 9410
ANH50504.1 KX011028_p93 tail protein phrog_2677 tail protein with lysin activity tail -1 68363 69250
ANH50488.1 KX011028_p77 exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 46039 47067
ANH50510.1 KX011028_p99 membrane protein phrog_4320 unknown function unknown function -1 77502 77696
ANH50432.1 KX011028_p21 hypothetical protein phrog_3669 unknown function unknown function -1 10118 10444