Genomic map of Lactococcus phage Dub35A (KX160220)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX160220
Definition
Lactococcus phage Dub35A, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
35188
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
35.38
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ANT44145.1 KX160220_p12 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 5565 6074
ANT44155.1 KX160220_p22 aminotransferase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 12939 13358
ANT44136.1 KX160220_p3 glycoside hydrolase phrog_23345 unknown function unknown function -1 1622 2398
ANT44182.1 KX160220_p49 holin phrog_689 holin lysis 1 30728 30952
ANT44165.1 KX160220_p32 terminase singleton unknown function unknown function 1 18927 19046
ANT44162.1 KX160220_p29 transcriptional activator phrog_36 transcriptional regulator transcription regulation 1 15846 16277
ANT44184.1 KX160220_p51 holin phrog_297 holin lysis 1 33020 33286
ANT44140.1 KX160220_p7 hypothetical protein phrog_15440 unknown function unknown function 1 3879 4097
ANT44141.1 KX160220_p8 hypothetical protein phrog_32978 unknown function unknown function 1 4110 4352
ANT44180.1 KX160220_p47 hypothetical protein phrog_538 minor tail protein tail 1 28526 29686
ANT44163.1 KX160220_p30 structural protein phrog_104 portal protein head and packaging 1 16799 18112
ANT44151.1 KX160220_p18 VRR-NUC domain-containing protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 11064 11375
ANT44181.1 KX160220_p48 hypothetical protein phrog_1220 head protein head and packaging 1 29683 30714
ANT44185.1 KX160220_p52 1,4-beta-N-acetylmuramidase phrog_291 endolysin lysis 1 33283 34629
ANT44175.1 KX160220_p42 tail protein phrog_117 major tail protein tail 1 23832 24389
ANT44161.1 KX160220_p28 hypothetical protein singleton unknown function unknown function 1 15508 15762
ANT44149.1 KX160220_p16 bifunctional DNA primase/polymerase phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 8611 9405
ANT44159.1 KX160220_p26 hypothetical protein phrog_2670 unknown function unknown function 1 14890 15051
ANT44173.1 KX160220_p40 hypothetical protein phrog_387 neck protein connector 1 23249 23485
ANT44171.1 KX160220_p38 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 22533 22931
ANT44186.1 KX160220_p53 hypothetical protein singleton unknown function unknown function 1 34698 35168
ANT44169.1 KX160220_p36 major capsid protein phrog_10 major head protein head and packaging 1 21321 22217
ANT44183.1 KX160220_p50 minor structural protein phrog_2370 neck passage structure connector 1 30965 32995
ANT44176.1 KX160220_p43 hypothetical protein phrog_1526 unknown function unknown function 1 24432 24692
ANT44137.1 KX160220_p4 hypothetical protein phrog_3374 unknown function unknown function -1 2451 2651
ANT44177.1 KX160220_p44 hypothetical protein phrog_1633 unknown function unknown function 1 24707 25081
ANT44156.1 KX160220_p23 hypothetical protein phrog_4000 unknown function unknown function 1 13363 13851
ANT44164.1 KX160220_p31 hypothetical protein phrog_2494 minor head protein head and packaging 1 18112 18876
ANT44158.1 KX160220_p25 hypothetical protein phrog_21183 unknown function unknown function 1 14654 14893
ANT44160.1 KX160220_p27 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 15060 15275
ANT44153.1 KX160220_p20 hypothetical protein phrog_7240 unknown function unknown function 1 12156 12362
ANT44139.1 KX160220_p6 XRE family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 3239 3583
ANT44146.1 KX160220_p13 nucleotide-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6074 6793
ANT44144.1 KX160220_p11 Cro/CI family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 5346 5561
ANT44134.1 KX160220_p1 hypothetical protein singleton unknown function unknown function -1 64 171
ANT44138.1 KX160220_p5 hypothetical protein phrog_87 metallo-protease other -1 2663 3226
ANT44167.1 KX160220_p34 terminase large subunit phrog_9 terminase large subunit head and packaging 1 19371 20780
ANT44152.1 KX160220_p19 hypothetical protein singleton unknown function unknown function 1 11482 11577
ANT44154.1 KX160220_p21 hypothetical protein phrog_121 unknown function unknown function 1 12355 12942
ANT44174.1 KX160220_p41 hypothetical protein phrog_123 tail terminator connector 1 23486 23821
ANT44178.1 KX160220_p45 hypothetical protein phrog_58 tail length tape measure protein tail 1 25081 27612
ANT44172.1 KX160220_p39 hypothetical protein phrog_501 head closure Hc1 connector 1 22924 23256
ANT44135.1 KX160220_p2 integrase family protein phrog_1 integrase integration and excision -1 339 1484
ANT44168.1 KX160220_p35 scaffold protein phrog_233 head scaffolding protein head and packaging 1 20853 21317
ANT44170.1 KX160220_p37 hypothetical protein phrog_1539 Arc-like repressor transcription regulation 1 22232 22531
ANT44166.1 KX160220_p33 hypothetical protein singleton unknown function unknown function 1 19036 19320
ANT44150.1 KX160220_p17 DNA primase phrog_864 DNA primase DNA, RNA and nucleotide metabolism 1 9380 10834
ANT44157.1 KX160220_p24 hypothetical protein phrog_1071 DNA methyltransferase other 1 13894 14574
ANT44147.1 KX160220_p14 DEAD/DEAH box helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 6780 8126
ANT44179.1 KX160220_p46 tail protein phrog_33 distal tail protein Dit tail 1 27625 28521
ANT44142.1 KX160220_p9 hypothetical protein phrog_5257 unknown function unknown function 1 4358 4606
ANT44143.1 KX160220_p10 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4711 5331
ANT44148.1 KX160220_p15 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8144 8596