Genomic map of Clostridium phage CDKM9 (KX228399)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX228399
Definition
Clostridium phage CDKM9, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
DB of origin
NUCCORE
Length
49822
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
75
%GC
28.97
Number of singletons
2
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ANT45089.1 KX228399_p21 XkdS-related protein phrog_120 baseplate wedge subunit tail 1 19437 19895
ANT45136.1 KX228399_p68 hypothetical protein singleton unknown function unknown function 1 45742 45861
ANT45123.1 KX228399_p55 hypothetical protein phrog_11749 unknown function unknown function 1 39588 39734
ANT45100.1 KX228399_p32 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 26039 26878
ANT45131.1 KX228399_p63 hypothetical protein phrog_1310 unknown function unknown function 1 43379 43744
ANT45111.1 KX228399_p43 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 34700 34921
ANT45081.1 KX228399_p13 tail sheath protein phrog_279 tail sheath tail 1 9610 11031
ANT45117.1 KX228399_p49 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 37470 37646
ANT45143.1 KX228399_p75 BRO N-terminal domain regulatory protein phrog_463 anti-repressor transcription regulation 1 49083 49760
ANT45080.1 KX228399_p12 hypothetical protein phrog_1939 unknown function unknown function 1 9405 9608
ANT45086.1 KX228399_p18 LysM family protein phrog_380 endolysin lysis 1 17474 18145
ANT45135.1 KX228399_p67 hypothetical protein singleton unknown function unknown function 1 45672 45788
ANT45093.1 KX228399_p25 hypothetical protein phrog_3361 unknown function unknown function 1 22799 23437
ANT45097.1 KX228399_p29 hypothetical protein phrog_3834 unknown function unknown function 1 25108 25407
ANT45076.1 KX228399_p8 hypothetical protein phrog_3029 unknown function unknown function 1 7446 7784
ANT45122.1 KX228399_p54 hypothetical protein phrog_1877 DNA binding protein DNA, RNA and nucleotide metabolism 1 39153 39587
ANT45128.1 KX228399_p60 hypothetical protein phrog_3253 unknown function unknown function 1 42178 42351
ANT45118.1 KX228399_p50 BRO N-terminal domain regulatory protein phrog_463 anti-repressor transcription regulation 1 37639 38277
ANT45082.1 KX228399_p14 XkdM-related protein phrog_365 tail protein tail 1 11047 11469
ANT45090.1 KX228399_p22 baseplate J family protein phrog_6 baseplate wedge subunit tail 1 19904 21040
ANT45078.1 KX228399_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 8124 8570
ANT45085.1 KX228399_p17 hypothetical protein phrog_3793 unknown function unknown function 1 16610 17404
ANT45073.1 KX228399_p5 hypothetical protein phrog_3219 unknown function unknown function 1 4617 5951
ANT45124.1 KX228399_p56 hypothetical protein phrog_2219 unknown function unknown function 1 39737 40054
ANT45119.1 KX228399_p51 hypothetical protein phrog_9735 unknown function unknown function 1 38336 38716
ANT45075.1 KX228399_p7 hypothetical protein phrog_3116 unknown function unknown function 1 6369 7406
ANT45104.1 KX228399_p36 hypothetical protein phrog_87 metallo-protease other -1 29631 30152
ANT45112.1 KX228399_p44 XRE family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 35379 35774
ANT45139.1 KX228399_p71 hypothetical protein phrog_3794 unknown function unknown function 1 46403 46516
ANT45094.1 KX228399_p26 hypothetical protein phrog_4196 unknown function unknown function 1 23447 23659
ANT45105.1 KX228399_p37 hypothetical protein phrog_2569 unknown function unknown function -1 30854 31042
ANT45101.1 KX228399_p33 hypothetical protein phrog_5384 unknown function unknown function 1 26974 27321
ANT45109.1 KX228399_p41 integrase phrog_1 integrase integration and excision -1 33131 34345
ANT45132.1 KX228399_p64 hypothetical protein phrog_2961 unknown function unknown function 1 43744 43878
ANT45113.1 KX228399_p45 BetR domain DNA-binding protein phrog_3 transcriptional repressor transcription regulation 1 35953 36186
ANT45134.1 KX228399_p66 DNA-cytosine methyltransferase phrog_116 DNA methyltransferase other 1 44306 45379
ANT45142.1 KX228399_p74 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 48013 48501
ANT45071.1 KX228399_p3 portal protein phrog_64 portal protein head and packaging 1 2095 3597
ANT45088.1 KX228399_p20 hypothetical protein phrog_2403 unknown function unknown function 1 19097 19459
ANT45098.1 KX228399_p30 XkdX-related protein phrog_134 unknown function unknown function 1 25409 25546
ANT45106.1 KX228399_p38 hypothetical protein phrog_738 unknown function unknown function 1 31300 31443
ANT45114.1 KX228399_p46 KilAC/pRha domain transcriptional regulator phrog_63 anti-repressor Ant transcription regulation 1 36186 36974
ANT45140.1 KX228399_p72 RusA family endonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 46513 46920
ANT45074.1 KX228399_p6 hypothetical protein phrog_122 head decoration head and packaging 1 5967 6350
ANT45103.1 KX228399_p35 hypothetical protein phrog_6174 unknown function unknown function -1 28069 29655
ANT45121.1 KX228399_p53 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 38917 39114
ANT45138.1 KX228399_p70 hypothetical protein phrog_19701 unknown function unknown function 1 46145 46384
ANT45087.1 KX228399_p19 hypothetical protein phrog_400 tail protein tail 1 18142 19104
ANT45130.1 KX228399_p62 hypothetical protein phrog_7118 unknown function unknown function 1 42802 43365
ANT45096.1 KX228399_p28 hypothetical protein phrog_4184 unknown function unknown function 1 23876 25111
ANT45120.1 KX228399_p52 hypothetical protein phrog_5079 unknown function unknown function -1 38706 38858
ANT45077.1 KX228399_p9 hypothetical protein phrog_2405 unknown function unknown function 1 7781 8158
ANT45072.1 KX228399_p4 head morphogenesis protein phrog_1657 head morphogenesis head and packaging 1 3584 4597
ANT45127.1 KX228399_p59 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 41321 42115
ANT45108.1 KX228399_p40 BlaI/MecI/CopY family transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 32437 32820
ANT45125.1 KX228399_p57 hypothetical protein phrog_4500 unknown function unknown function 1 40136 40411
ANT45133.1 KX228399_p65 hypothetical protein phrog_8001 unknown function unknown function 1 43862 44197
ANT45115.1 KX228399_p47 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 37031 37168
ANT45092.1 KX228399_p24 tail fiber protein phrog_1162 tail fiber protein tail 1 21679 22785
ANT45137.1 KX228399_p69 hypothetical protein phrog_6066 unknown function unknown function 1 45946 46131
ANT45083.1 KX228399_p15 XkdN-related protein phrog_389 tail protein XkdN-like tail 1 11548 12021
ANT45095.1 KX228399_p27 hypothetical protein phrog_1243 unknown function unknown function 1 23659 23841
ANT45099.1 KX228399_p31 holin phrog_199 holin lysis 1 25608 26039
ANT45141.1 KX228399_p73 KilA-N/ORF6 family transcriptional regulator phrog_463 anti-repressor transcription regulation 1 47022 47870
ANT45116.1 KX228399_p48 Arc-like DNA binding domain protein phrog_228 Arc-like repressor transcription regulation -1 37180 37383
ANT45079.1 KX228399_p11 hypothetical protein phrog_2146 unknown function unknown function 1 8571 9392
ANT45069.1 KX228399_p1 terminase small subunit phrog_509 terminase small subunit head and packaging 1 1 702
ANT45102.1 KX228399_p34 hypothetical protein phrog_5951 unknown function unknown function 1 27487 28005
ANT45091.1 KX228399_p23 tail protein phrog_521 tail protein tail 1 21037 21666
ANT45070.1 KX228399_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 695 2104
ANT45129.1 KX228399_p61 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 42367 42774
ANT45107.1 KX228399_p39 BlaI/MecI/CopY family transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 31950 32327
ANT45084.1 KX228399_p16 tail tape measure protein phrog_1272 tail length tape measure protein tail 1 12202 16530
ANT45126.1 KX228399_p58 Bet family recombination protein phrog_10056 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 40404 41306
ANT45110.1 KX228399_p42 hypothetical protein phrog_8194 unknown function unknown function -1 34435 34650