| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX228399 |
Definition |
Clostridium phage CDKM9, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus. |
DB of origin |
NUCCORE |
Length |
49822 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
28.97 |
Number of singletons |
2 |
Number of paralogs |
6 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANT45089.1 | KX228399_p21 | XkdS-related protein | phrog_120 | baseplate wedge subunit | tail | 1 | 19437 | 19895 |
| ANT45136.1 | KX228399_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45742 | 45861 |
| ANT45123.1 | KX228399_p55 | hypothetical protein | phrog_11749 | unknown function | unknown function | 1 | 39588 | 39734 |
| ANT45100.1 | KX228399_p32 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 26039 | 26878 |
| ANT45131.1 | KX228399_p63 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 43379 | 43744 |
| ANT45111.1 | KX228399_p43 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 34700 | 34921 |
| ANT45081.1 | KX228399_p13 | tail sheath protein | phrog_279 | tail sheath | tail | 1 | 9610 | 11031 |
| ANT45117.1 | KX228399_p49 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 37470 | 37646 |
| ANT45143.1 | KX228399_p75 | BRO N-terminal domain regulatory protein | phrog_463 | anti-repressor | transcription regulation | 1 | 49083 | 49760 |
| ANT45080.1 | KX228399_p12 | hypothetical protein | phrog_1939 | unknown function | unknown function | 1 | 9405 | 9608 |
| ANT45086.1 | KX228399_p18 | LysM family protein | phrog_380 | endolysin | lysis | 1 | 17474 | 18145 |
| ANT45135.1 | KX228399_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45672 | 45788 |
| ANT45093.1 | KX228399_p25 | hypothetical protein | phrog_3361 | unknown function | unknown function | 1 | 22799 | 23437 |
| ANT45097.1 | KX228399_p29 | hypothetical protein | phrog_3834 | unknown function | unknown function | 1 | 25108 | 25407 |
| ANT45076.1 | KX228399_p8 | hypothetical protein | phrog_3029 | unknown function | unknown function | 1 | 7446 | 7784 |
| ANT45122.1 | KX228399_p54 | hypothetical protein | phrog_1877 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39153 | 39587 |
| ANT45128.1 | KX228399_p60 | hypothetical protein | phrog_3253 | unknown function | unknown function | 1 | 42178 | 42351 |
| ANT45118.1 | KX228399_p50 | BRO N-terminal domain regulatory protein | phrog_463 | anti-repressor | transcription regulation | 1 | 37639 | 38277 |
| ANT45082.1 | KX228399_p14 | XkdM-related protein | phrog_365 | tail protein | tail | 1 | 11047 | 11469 |
| ANT45090.1 | KX228399_p22 | baseplate J family protein | phrog_6 | baseplate wedge subunit | tail | 1 | 19904 | 21040 |
| ANT45078.1 | KX228399_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8124 | 8570 |
| ANT45085.1 | KX228399_p17 | hypothetical protein | phrog_3793 | unknown function | unknown function | 1 | 16610 | 17404 |
| ANT45073.1 | KX228399_p5 | hypothetical protein | phrog_3219 | unknown function | unknown function | 1 | 4617 | 5951 |
| ANT45124.1 | KX228399_p56 | hypothetical protein | phrog_2219 | unknown function | unknown function | 1 | 39737 | 40054 |
| ANT45119.1 | KX228399_p51 | hypothetical protein | phrog_9735 | unknown function | unknown function | 1 | 38336 | 38716 |
| ANT45075.1 | KX228399_p7 | hypothetical protein | phrog_3116 | unknown function | unknown function | 1 | 6369 | 7406 |
| ANT45104.1 | KX228399_p36 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 29631 | 30152 |
| ANT45112.1 | KX228399_p44 | XRE family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 35379 | 35774 |
| ANT45139.1 | KX228399_p71 | hypothetical protein | phrog_3794 | unknown function | unknown function | 1 | 46403 | 46516 |
| ANT45094.1 | KX228399_p26 | hypothetical protein | phrog_4196 | unknown function | unknown function | 1 | 23447 | 23659 |
| ANT45105.1 | KX228399_p37 | hypothetical protein | phrog_2569 | unknown function | unknown function | -1 | 30854 | 31042 |
| ANT45101.1 | KX228399_p33 | hypothetical protein | phrog_5384 | unknown function | unknown function | 1 | 26974 | 27321 |
| ANT45109.1 | KX228399_p41 | integrase | phrog_1 | integrase | integration and excision | -1 | 33131 | 34345 |
| ANT45132.1 | KX228399_p64 | hypothetical protein | phrog_2961 | unknown function | unknown function | 1 | 43744 | 43878 |
| ANT45113.1 | KX228399_p45 | BetR domain DNA-binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 35953 | 36186 |
| ANT45134.1 | KX228399_p66 | DNA-cytosine methyltransferase | phrog_116 | DNA methyltransferase | other | 1 | 44306 | 45379 |
| ANT45142.1 | KX228399_p74 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 48013 | 48501 |
| ANT45071.1 | KX228399_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2095 | 3597 |
| ANT45088.1 | KX228399_p20 | hypothetical protein | phrog_2403 | unknown function | unknown function | 1 | 19097 | 19459 |
| ANT45098.1 | KX228399_p30 | XkdX-related protein | phrog_134 | unknown function | unknown function | 1 | 25409 | 25546 |
| ANT45106.1 | KX228399_p38 | hypothetical protein | phrog_738 | unknown function | unknown function | 1 | 31300 | 31443 |
| ANT45114.1 | KX228399_p46 | KilAC/pRha domain transcriptional regulator | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 36186 | 36974 |
| ANT45140.1 | KX228399_p72 | RusA family endonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 46513 | 46920 |
| ANT45074.1 | KX228399_p6 | hypothetical protein | phrog_122 | head decoration | head and packaging | 1 | 5967 | 6350 |
| ANT45103.1 | KX228399_p35 | hypothetical protein | phrog_6174 | unknown function | unknown function | -1 | 28069 | 29655 |
| ANT45121.1 | KX228399_p53 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 38917 | 39114 |
| ANT45138.1 | KX228399_p70 | hypothetical protein | phrog_19701 | unknown function | unknown function | 1 | 46145 | 46384 |
| ANT45087.1 | KX228399_p19 | hypothetical protein | phrog_400 | tail protein | tail | 1 | 18142 | 19104 |
| ANT45130.1 | KX228399_p62 | hypothetical protein | phrog_7118 | unknown function | unknown function | 1 | 42802 | 43365 |
| ANT45096.1 | KX228399_p28 | hypothetical protein | phrog_4184 | unknown function | unknown function | 1 | 23876 | 25111 |
| ANT45120.1 | KX228399_p52 | hypothetical protein | phrog_5079 | unknown function | unknown function | -1 | 38706 | 38858 |
| ANT45077.1 | KX228399_p9 | hypothetical protein | phrog_2405 | unknown function | unknown function | 1 | 7781 | 8158 |
| ANT45072.1 | KX228399_p4 | head morphogenesis protein | phrog_1657 | head morphogenesis | head and packaging | 1 | 3584 | 4597 |
| ANT45127.1 | KX228399_p59 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 41321 | 42115 |
| ANT45108.1 | KX228399_p40 | BlaI/MecI/CopY family transcriptional regulator | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 32437 | 32820 |
| ANT45125.1 | KX228399_p57 | hypothetical protein | phrog_4500 | unknown function | unknown function | 1 | 40136 | 40411 |
| ANT45133.1 | KX228399_p65 | hypothetical protein | phrog_8001 | unknown function | unknown function | 1 | 43862 | 44197 |
| ANT45115.1 | KX228399_p47 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 37031 | 37168 |
| ANT45092.1 | KX228399_p24 | tail fiber protein | phrog_1162 | tail fiber protein | tail | 1 | 21679 | 22785 |
| ANT45137.1 | KX228399_p69 | hypothetical protein | phrog_6066 | unknown function | unknown function | 1 | 45946 | 46131 |
| ANT45083.1 | KX228399_p15 | XkdN-related protein | phrog_389 | tail protein XkdN-like | tail | 1 | 11548 | 12021 |
| ANT45095.1 | KX228399_p27 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 23659 | 23841 |
| ANT45099.1 | KX228399_p31 | holin | phrog_199 | holin | lysis | 1 | 25608 | 26039 |
| ANT45141.1 | KX228399_p73 | KilA-N/ORF6 family transcriptional regulator | phrog_463 | anti-repressor | transcription regulation | 1 | 47022 | 47870 |
| ANT45116.1 | KX228399_p48 | Arc-like DNA binding domain protein | phrog_228 | Arc-like repressor | transcription regulation | -1 | 37180 | 37383 |
| ANT45079.1 | KX228399_p11 | hypothetical protein | phrog_2146 | unknown function | unknown function | 1 | 8571 | 9392 |
| ANT45069.1 | KX228399_p1 | terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 1 | 702 |
| ANT45102.1 | KX228399_p34 | hypothetical protein | phrog_5951 | unknown function | unknown function | 1 | 27487 | 28005 |
| ANT45091.1 | KX228399_p23 | tail protein | phrog_521 | tail protein | tail | 1 | 21037 | 21666 |
| ANT45070.1 | KX228399_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 695 | 2104 |
| ANT45129.1 | KX228399_p61 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42367 | 42774 |
| ANT45107.1 | KX228399_p39 | BlaI/MecI/CopY family transcriptional regulator | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 31950 | 32327 |
| ANT45084.1 | KX228399_p16 | tail tape measure protein | phrog_1272 | tail length tape measure protein | tail | 1 | 12202 | 16530 |
| ANT45126.1 | KX228399_p58 | Bet family recombination protein | phrog_10056 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40404 | 41306 |
| ANT45110.1 | KX228399_p42 | hypothetical protein | phrog_8194 | unknown function | unknown function | -1 | 34435 | 34650 |