| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX228400 |
Definition |
Clostridium phage CDKM15, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus. |
DB of origin |
NUCCORE |
Length |
50605 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
28.68 |
Number of singletons |
1 |
Number of paralogs |
5 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANT45166.1 | KX228400_p23 | LysM family protein | phrog_380 | endolysin | lysis | 1 | 20679 | 21350 |
| ANT45194.1 | KX228400_p51 | hypothetical protein | phrog_1877 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38191 | 38625 |
| ANT45202.1 | KX228400_p59 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 40270 | 40779 |
| ANT45155.1 | KX228400_p12 | hypothetical protein | phrog_2146 | unknown function | unknown function | 1 | 8766 | 9587 |
| ANT45147.1 | KX228400_p4 | head morphogenesis protein | phrog_1657 | head morphogenesis | head and packaging | 1 | 3584 | 4597 |
| ANT45214.1 | KX228400_p71 | hypothetical protein | phrog_2994 | unknown function | unknown function | 1 | 46849 | 47016 |
| ANT45165.1 | KX228400_p22 | hypothetical protein | phrog_738 | unknown function | unknown function | 1 | 20158 | 20316 |
| ANT45208.1 | KX228400_p65 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 43536 | 43901 |
| ANT45180.1 | KX228400_p37 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 29244 | 30056 |
| ANT45177.1 | KX228400_p34 | hypothetical protein | phrog_3834 | unknown function | unknown function | 1 | 28313 | 28612 |
| ANT45181.1 | KX228400_p38 | hypothetical protein | phrog_9125 | unknown function | unknown function | 1 | 30306 | 30797 |
| ANT45184.1 | KX228400_p41 | hypothetical protein | phrog_738 | unknown function | unknown function | 1 | 32221 | 32364 |
| ANT45150.1 | KX228400_p7 | hypothetical protein | phrog_3116 | unknown function | unknown function | 1 | 6368 | 7405 |
| ANT45212.1 | KX228400_p69 | hypothetical protein | phrog_2462 | unknown function | unknown function | 1 | 45615 | 45824 |
| ANT45172.1 | KX228400_p29 | tail fiber protein | phrog_1162 | tail fiber protein | tail | 1 | 24884 | 25990 |
| ANT45148.1 | KX228400_p5 | hypothetical protein | phrog_3219 | unknown function | unknown function | 1 | 4617 | 5951 |
| ANT45183.1 | KX228400_p40 | hypothetical protein | phrog_2569 | unknown function | unknown function | -1 | 31775 | 31963 |
| ANT45219.1 | KX228400_p76 | hypothetical protein | phrog_7415 | unknown function | unknown function | 1 | 48601 | 48810 |
| ANT45179.1 | KX228400_p36 | holin | phrog_199 | holin | lysis | 1 | 28813 | 29244 |
| ANT45192.1 | KX228400_p49 | transcriptional regulator | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 37103 | 37855 |
| ANT45200.1 | KX228400_p57 | hypothetical protein | phrog_1564 | unknown function | unknown function | 1 | 39547 | 39774 |
| ANT45162.1 | KX228400_p19 | hypothetical protein | phrog_876 | transcriptional repressor | transcription regulation | 1 | 18529 | 18711 |
| ANT45185.1 | KX228400_p42 | BlaI/MecI/CopY family transcriptional regulator | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 32872 | 33249 |
| ANT45188.1 | KX228400_p45 | hypothetical protein | phrog_8194 | unknown function | unknown function | -1 | 35352 | 35558 |
| ANT45207.1 | KX228400_p64 | hypothetical protein | phrog_7118 | unknown function | unknown function | 1 | 43019 | 43522 |
| ANT45168.1 | KX228400_p25 | hypothetical protein | phrog_2403 | unknown function | unknown function | 1 | 22302 | 22664 |
| ANT45187.1 | KX228400_p44 | integrase | phrog_1 | integrase | integration and excision | -1 | 34048 | 35214 |
| ANT45170.1 | KX228400_p27 | baseplate J family protein | phrog_6 | baseplate wedge subunit | tail | 1 | 23109 | 24245 |
| ANT45218.1 | KX228400_p75 | holliday junction resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48168 | 48611 |
| ANT45201.1 | KX228400_p58 | hypothetical protein | phrog_2219 | unknown function | unknown function | 1 | 39872 | 40186 |
| ANT45213.1 | KX228400_p70 | 37-kD nucleoid-associated family protein | phrog_1974 | unknown function | unknown function | 1 | 45836 | 46840 |
| ANT45221.1 | KX228400_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49700 | 49936 |
| ANT45197.1 | KX228400_p54 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 38973 | 39116 |
| ANT45195.1 | KX228400_p52 | hypothetical protein | phrog_35211 | unknown function | unknown function | 1 | 38626 | 38742 |
| ANT45193.1 | KX228400_p50 | hypothetical protein | phrog_13923 | unknown function | unknown function | 1 | 37900 | 38154 |
| ANT45173.1 | KX228400_p30 | hypothetical protein | phrog_3361 | unknown function | unknown function | 1 | 26004 | 26642 |
| ANT45216.1 | KX228400_p73 | PUA domain protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 47396 | 47626 |
| ANT45175.1 | KX228400_p32 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 26864 | 27046 |
| ANT45146.1 | KX228400_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2095 | 3597 |
| ANT45153.1 | KX228400_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8159 | 8569 |
| ANT45220.1 | KX228400_p77 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 48915 | 49421 |
| ANT45182.1 | KX228400_p39 | hypothetical protein | phrog_9105 | unknown function | unknown function | 1 | 30799 | 31365 |
| ANT45161.1 | KX228400_p18 | hypothetical protein | phrog_20665 | unknown function | unknown function | 1 | 16765 | 17685 |
| ANT45149.1 | KX228400_p6 | hypothetical protein | phrog_122 | head decoration | head and packaging | 1 | 5967 | 6350 |
| ANT45145.1 | KX228400_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 695 | 2104 |
| ANT45151.1 | KX228400_p8 | hypothetical protein | phrog_3029 | unknown function | unknown function | 1 | 7445 | 7783 |
| ANT45171.1 | KX228400_p28 | tail protein | phrog_521 | tail protein | tail | 1 | 24242 | 24871 |
| ANT45176.1 | KX228400_p33 | hypothetical protein | phrog_4184 | unknown function | unknown function | 1 | 27081 | 28316 |
| ANT45156.1 | KX228400_p13 | hypothetical protein | phrog_1939 | unknown function | unknown function | 1 | 9600 | 9803 |
| ANT45191.1 | KX228400_p48 | BetR domain DNA binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 36870 | 37103 |
| ANT45163.1 | KX228400_p20 | BRO N-terminal domain protein | phrog_2011 | anti-repressor Ant | transcription regulation | 1 | 18832 | 19716 |
| ANT45203.1 | KX228400_p60 | essential recombination function family protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40789 | 41397 |
| ANT45222.1 | KX228400_p79 | hypothetical protein | phrog_4899 | unknown function | unknown function | 1 | 49933 | 50571 |
| ANT45205.1 | KX228400_p62 | resolvase | phrog_3253 | unknown function | unknown function | 1 | 42349 | 42522 |
| ANT45211.1 | KX228400_p68 | DNA-cytosine methyltransferase | phrog_116 | DNA methyltransferase | other | 1 | 44462 | 45535 |
| ANT45206.1 | KX228400_p63 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42538 | 42945 |
| ANT45199.1 | KX228400_p56 | Arc-like DNA binding domain protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 39389 | 39547 |
| ANT45164.1 | KX228400_p21 | hypothetical protein | phrog_2435 | unknown function | unknown function | 1 | 19779 | 19982 |
| ANT45186.1 | KX228400_p43 | BlaI/MecI/CopY family transcriptional regulator | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 33354 | 33737 |
| ANT45217.1 | KX228400_p74 | hypothetical protein | phrog_1672 | unknown function | unknown function | 1 | 47678 | 48178 |
| ANT45160.1 | KX228400_p17 | tail tape measure protein | phrog_1272 | tail length tape measure protein | tail | 1 | 12395 | 16684 |
| ANT45158.1 | KX228400_p15 | XkdM-related protein | phrog_365 | tail protein | tail | 1 | 11242 | 11664 |
| ANT45210.1 | KX228400_p67 | hypothetical protein | phrog_8001 | unknown function | unknown function | 1 | 44019 | 44354 |
| ANT45196.1 | KX228400_p53 | hypothetical protein | phrog_4222 | unknown function | unknown function | 1 | 38753 | 38941 |
| ANT45169.1 | KX228400_p26 | XkdS-related protein | phrog_120 | baseplate wedge subunit | tail | 1 | 22642 | 23100 |
| ANT45174.1 | KX228400_p31 | hypothetical protein | phrog_4196 | unknown function | unknown function | 1 | 26652 | 26864 |
| ANT45215.1 | KX228400_p72 | hypothetical protein | phrog_4476 | unknown function | unknown function | 1 | 47101 | 47373 |
| ANT45178.1 | KX228400_p35 | XkdX-related protein | phrog_134 | unknown function | unknown function | 1 | 28614 | 28751 |
| ANT45159.1 | KX228400_p16 | XkdN-related protein | phrog_389 | tail protein XkdN-like | tail | 1 | 11741 | 12214 |
| ANT45189.1 | KX228400_p46 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 35617 | 35838 |
| ANT45157.1 | KX228400_p14 | tail sheath protein | phrog_279 | tail sheath | tail | 1 | 9805 | 11226 |
| ANT45154.1 | KX228400_p11 | hypothetical protein | phrog_19246 | unknown function | unknown function | 1 | 8572 | 8748 |
| ANT45209.1 | KX228400_p66 | hypothetical protein | phrog_2961 | unknown function | unknown function | 1 | 43901 | 44035 |
| ANT45167.1 | KX228400_p24 | hypothetical protein | phrog_400 | tail protein | tail | 1 | 21347 | 22309 |
| ANT45190.1 | KX228400_p47 | Cro/C1-type transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 36296 | 36691 |
| ANT45204.1 | KX228400_p61 | replication protein DnaD | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 41407 | 42288 |
| ANT45144.1 | KX228400_p1 | terminase small subunit | phrog_1889 | terminase small subunit | head and packaging | 1 | 1 | 702 |
| ANT45152.1 | KX228400_p9 | hypothetical protein | phrog_2405 | unknown function | unknown function | 1 | 7780 | 8157 |
| ANT45198.1 | KX228400_p55 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | -1 | 39076 | 39255 |