Genomic map of Clostridium phage CDKM15 (KX228400)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX228400
Definition
Clostridium phage CDKM15, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
DB of origin
NUCCORE
Length
50605
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
28.68
Number of singletons
1
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ANT45166.1 KX228400_p23 LysM family protein phrog_380 endolysin lysis 1 20679 21350
ANT45194.1 KX228400_p51 hypothetical protein phrog_1877 DNA binding protein DNA, RNA and nucleotide metabolism 1 38191 38625
ANT45202.1 KX228400_p59 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 40270 40779
ANT45155.1 KX228400_p12 hypothetical protein phrog_2146 unknown function unknown function 1 8766 9587
ANT45147.1 KX228400_p4 head morphogenesis protein phrog_1657 head morphogenesis head and packaging 1 3584 4597
ANT45214.1 KX228400_p71 hypothetical protein phrog_2994 unknown function unknown function 1 46849 47016
ANT45165.1 KX228400_p22 hypothetical protein phrog_738 unknown function unknown function 1 20158 20316
ANT45208.1 KX228400_p65 hypothetical protein phrog_1310 unknown function unknown function 1 43536 43901
ANT45180.1 KX228400_p37 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 29244 30056
ANT45177.1 KX228400_p34 hypothetical protein phrog_3834 unknown function unknown function 1 28313 28612
ANT45181.1 KX228400_p38 hypothetical protein phrog_9125 unknown function unknown function 1 30306 30797
ANT45184.1 KX228400_p41 hypothetical protein phrog_738 unknown function unknown function 1 32221 32364
ANT45150.1 KX228400_p7 hypothetical protein phrog_3116 unknown function unknown function 1 6368 7405
ANT45212.1 KX228400_p69 hypothetical protein phrog_2462 unknown function unknown function 1 45615 45824
ANT45172.1 KX228400_p29 tail fiber protein phrog_1162 tail fiber protein tail 1 24884 25990
ANT45148.1 KX228400_p5 hypothetical protein phrog_3219 unknown function unknown function 1 4617 5951
ANT45183.1 KX228400_p40 hypothetical protein phrog_2569 unknown function unknown function -1 31775 31963
ANT45219.1 KX228400_p76 hypothetical protein phrog_7415 unknown function unknown function 1 48601 48810
ANT45179.1 KX228400_p36 holin phrog_199 holin lysis 1 28813 29244
ANT45192.1 KX228400_p49 transcriptional regulator phrog_63 anti-repressor Ant transcription regulation 1 37103 37855
ANT45200.1 KX228400_p57 hypothetical protein phrog_1564 unknown function unknown function 1 39547 39774
ANT45162.1 KX228400_p19 hypothetical protein phrog_876 transcriptional repressor transcription regulation 1 18529 18711
ANT45185.1 KX228400_p42 BlaI/MecI/CopY family transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 32872 33249
ANT45188.1 KX228400_p45 hypothetical protein phrog_8194 unknown function unknown function -1 35352 35558
ANT45207.1 KX228400_p64 hypothetical protein phrog_7118 unknown function unknown function 1 43019 43522
ANT45168.1 KX228400_p25 hypothetical protein phrog_2403 unknown function unknown function 1 22302 22664
ANT45187.1 KX228400_p44 integrase phrog_1 integrase integration and excision -1 34048 35214
ANT45170.1 KX228400_p27 baseplate J family protein phrog_6 baseplate wedge subunit tail 1 23109 24245
ANT45218.1 KX228400_p75 holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 48168 48611
ANT45201.1 KX228400_p58 hypothetical protein phrog_2219 unknown function unknown function 1 39872 40186
ANT45213.1 KX228400_p70 37-kD nucleoid-associated family protein phrog_1974 unknown function unknown function 1 45836 46840
ANT45221.1 KX228400_p78 hypothetical protein singleton unknown function unknown function 1 49700 49936
ANT45197.1 KX228400_p54 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 38973 39116
ANT45195.1 KX228400_p52 hypothetical protein phrog_35211 unknown function unknown function 1 38626 38742
ANT45193.1 KX228400_p50 hypothetical protein phrog_13923 unknown function unknown function 1 37900 38154
ANT45173.1 KX228400_p30 hypothetical protein phrog_3361 unknown function unknown function 1 26004 26642
ANT45216.1 KX228400_p73 PUA domain protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 47396 47626
ANT45175.1 KX228400_p32 hypothetical protein phrog_1243 unknown function unknown function 1 26864 27046
ANT45146.1 KX228400_p3 portal protein phrog_64 portal protein head and packaging 1 2095 3597
ANT45153.1 KX228400_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 8159 8569
ANT45220.1 KX228400_p77 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 48915 49421
ANT45182.1 KX228400_p39 hypothetical protein phrog_9105 unknown function unknown function 1 30799 31365
ANT45161.1 KX228400_p18 hypothetical protein phrog_20665 unknown function unknown function 1 16765 17685
ANT45149.1 KX228400_p6 hypothetical protein phrog_122 head decoration head and packaging 1 5967 6350
ANT45145.1 KX228400_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 695 2104
ANT45151.1 KX228400_p8 hypothetical protein phrog_3029 unknown function unknown function 1 7445 7783
ANT45171.1 KX228400_p28 tail protein phrog_521 tail protein tail 1 24242 24871
ANT45176.1 KX228400_p33 hypothetical protein phrog_4184 unknown function unknown function 1 27081 28316
ANT45156.1 KX228400_p13 hypothetical protein phrog_1939 unknown function unknown function 1 9600 9803
ANT45191.1 KX228400_p48 BetR domain DNA binding protein phrog_3 transcriptional repressor transcription regulation 1 36870 37103
ANT45163.1 KX228400_p20 BRO N-terminal domain protein phrog_2011 anti-repressor Ant transcription regulation 1 18832 19716
ANT45203.1 KX228400_p60 essential recombination function family protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 40789 41397
ANT45222.1 KX228400_p79 hypothetical protein phrog_4899 unknown function unknown function 1 49933 50571
ANT45205.1 KX228400_p62 resolvase phrog_3253 unknown function unknown function 1 42349 42522
ANT45211.1 KX228400_p68 DNA-cytosine methyltransferase phrog_116 DNA methyltransferase other 1 44462 45535
ANT45206.1 KX228400_p63 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 42538 42945
ANT45199.1 KX228400_p56 Arc-like DNA binding domain protein phrog_582 Arc-like repressor transcription regulation 1 39389 39547
ANT45164.1 KX228400_p21 hypothetical protein phrog_2435 unknown function unknown function 1 19779 19982
ANT45186.1 KX228400_p43 BlaI/MecI/CopY family transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 33354 33737
ANT45217.1 KX228400_p74 hypothetical protein phrog_1672 unknown function unknown function 1 47678 48178
ANT45160.1 KX228400_p17 tail tape measure protein phrog_1272 tail length tape measure protein tail 1 12395 16684
ANT45158.1 KX228400_p15 XkdM-related protein phrog_365 tail protein tail 1 11242 11664
ANT45210.1 KX228400_p67 hypothetical protein phrog_8001 unknown function unknown function 1 44019 44354
ANT45196.1 KX228400_p53 hypothetical protein phrog_4222 unknown function unknown function 1 38753 38941
ANT45169.1 KX228400_p26 XkdS-related protein phrog_120 baseplate wedge subunit tail 1 22642 23100
ANT45174.1 KX228400_p31 hypothetical protein phrog_4196 unknown function unknown function 1 26652 26864
ANT45215.1 KX228400_p72 hypothetical protein phrog_4476 unknown function unknown function 1 47101 47373
ANT45178.1 KX228400_p35 XkdX-related protein phrog_134 unknown function unknown function 1 28614 28751
ANT45159.1 KX228400_p16 XkdN-related protein phrog_389 tail protein XkdN-like tail 1 11741 12214
ANT45189.1 KX228400_p46 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 35617 35838
ANT45157.1 KX228400_p14 tail sheath protein phrog_279 tail sheath tail 1 9805 11226
ANT45154.1 KX228400_p11 hypothetical protein phrog_19246 unknown function unknown function 1 8572 8748
ANT45209.1 KX228400_p66 hypothetical protein phrog_2961 unknown function unknown function 1 43901 44035
ANT45167.1 KX228400_p24 hypothetical protein phrog_400 tail protein tail 1 21347 22309
ANT45190.1 KX228400_p47 Cro/C1-type transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 36296 36691
ANT45204.1 KX228400_p61 replication protein DnaD phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 41407 42288
ANT45144.1 KX228400_p1 terminase small subunit phrog_1889 terminase small subunit head and packaging 1 1 702
ANT45152.1 KX228400_p9 hypothetical protein phrog_2405 unknown function unknown function 1 7780 8157
ANT45198.1 KX228400_p55 hypothetical protein phrog_582 Arc-like repressor transcription regulation -1 39076 39255