Genomic map of Xanthomonas phage Xoo-sp2 (KX241618)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX241618
Definition
Xanthomonas phage Xoo-sp2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pamexvirus; unclassified Pamexvirus.
DB of origin
NUCCORE
Length
60497
Host Name
Xanthomonas oryzae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
66.53
Number of singletons
10
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ANT45229.1 KX241618_p7 hypothetical protein phrog_18196 unknown function unknown function -1 4238 4756
ANT45232.1 KX241618_p10 terminase small subunit phrog_4044 terminase small subunit head and packaging 1 8087 8707
ANT45228.1 KX241618_p6 hypothetical protein phrog_17764 unknown function unknown function -1 3972 4238
ANT45290.1 KX241618_p68 TolA protein phrog_17205 unknown function unknown function -1 52640 53098
ANT45265.1 KX241618_p43 tail protein phrog_1082 tail assembly protein tail 1 36229 37380
ANT45249.1 KX241618_p27 hypothetical protein phrog_18209 unknown function unknown function -1 25596 26561
ANT45300.1 KX241618_p78 hypothetical protein singleton unknown function unknown function -1 59480 59680
ANT45298.1 KX241618_p76 hypothetical protein phrog_421 unknown function unknown function -1 58606 59289
ANT45241.1 KX241618_p19 hypothetical protein singleton unknown function unknown function 1 16902 17204
ANT45282.1 KX241618_p60 hypothetical protein phrog_35736 unknown function unknown function -1 47774 48001
ANT45242.1 KX241618_p20 3'-phosphatase, 5'-polynucleotide kinase phrog_415 polynucleotide kinase other 1 17201 17659
ANT45276.1 KX241618_p54 hypothetical protein phrog_27196 unknown function unknown function -1 45169 45348
ANT45267.1 KX241618_p45 structral protein phrog_1180 tail assembly chaperone tail 1 38247 38480
ANT45239.1 KX241618_p17 ribonucleotide reductase of class Ia (aerobic) beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 14097 15077
ANT45296.1 KX241618_p74 hypothetical protein phrog_18640 unknown function unknown function -1 58050 58403
ANT45270.1 KX241618_p48 structral protein phrog_5363 unknown function unknown function 1 42885 43241
ANT45233.1 KX241618_p11 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 8780 9022
ANT45263.1 KX241618_p41 hypothetical protein phrog_4966 unknown function unknown function 1 33504 33746
ANT45225.1 KX241618_p3 hypothetical protein phrog_17547 unknown function unknown function -1 1202 1867
ANT45268.1 KX241618_p46 hypothetical protein phrog_1196 tail assembly chaperone tail 1 38477 38683
ANT45238.1 KX241618_p16 ribonucleotide reductase of class Ia (aerobic) alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 12259 14082
ANT45261.1 KX241618_p39 major tail protein phrog_290 minor tail protein tail 1 32042 32980
ANT45281.1 KX241618_p59 hypothetical protein phrog_17767 unknown function unknown function -1 46950 47549
ANT45234.1 KX241618_p12 hypothetical protein singleton unknown function unknown function 1 9022 9225
ANT45264.1 KX241618_p42 tail length tape-measure protein phrog_1538 tail length tape measure protein tail 1 33730 36225
ANT45293.1 KX241618_p71 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 54936 57194
ANT45258.1 KX241618_p36 structral protein phrog_161 head closure Hc1 connector 1 30815 31180
ANT45240.1 KX241618_p18 hypothetical protein phrog_1735 unknown function unknown function 1 15195 16832
ANT45278.1 KX241618_p56 hypothetical protein phrog_17853 unknown function unknown function -1 45671 45973
ANT45245.1 KX241618_p23 minor head protein phrog_21789 virion structural protein head and packaging 1 20187 23780
ANT45273.1 KX241618_p51 hypothetical protein phrog_739 Rz-like spanin lysis 1 44089 44565
ANT45297.1 KX241618_p75 hypothetical protein singleton unknown function unknown function -1 58400 58609
ANT45291.1 KX241618_p69 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 53240 54724
ANT45252.1 KX241618_p30 hypothetical protein phrog_11770 unknown function unknown function -1 27338 27547
ANT45257.1 KX241618_p35 structral protein phrog_477 head-tail adaptor Ad1 connector 1 30286 30810
ANT45254.1 KX241618_p32 major head protein phrog_212 major head protein head and packaging 1 28360 29292
ANT45251.1 KX241618_p29 hypothetical protein singleton unknown function unknown function -1 27042 27326
ANT45227.1 KX241618_p5 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 2429 3922
ANT45292.1 KX241618_p70 hypothetical protein singleton unknown function unknown function -1 54721 54939
ANT45230.1 KX241618_p8 hypothetical protein phrog_19009 unknown function unknown function 1 4975 5133
ANT45274.1 KX241618_p52 hypothetical protein singleton unknown function unknown function 1 44570 44752
ANT45283.1 KX241618_p61 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism -1 48111 48557
ANT45244.1 KX241618_p22 portal protein phrog_145 portal protein head and packaging 1 18643 20187
ANT45287.1 KX241618_p65 HAD superfamily hydrolase phrog_18404 hydrolase other -1 50417 51202
ANT45272.1 KX241618_p50 endolysin phrog_465 endolysin lysis 1 43585 44079
ANT45224.1 KX241618_p2 hypothetical protein singleton unknown function unknown function -1 826 1209
ANT45289.1 KX241618_p67 hypothetical protein phrog_11422 unknown function unknown function -1 51506 52453
ANT45246.1 KX241618_p24 hypothetical protein phrog_20070 unknown function unknown function 1 23784 24062
ANT45271.1 KX241618_p49 hypothetical protein phrog_14936 unknown function unknown function 1 43253 43588
ANT45295.1 KX241618_p73 hypothetical protein phrog_18147 unknown function unknown function -1 57664 58053
ANT45256.1 KX241618_p34 hypothetical protein phrog_6213 unknown function unknown function 1 29663 30265
ANT45236.1 KX241618_p14 terminase large subunit phrog_2 terminase large subunit head and packaging 1 9688 11160
ANT45262.1 KX241618_p40 hypothetical protein phrog_313 Tail assembly chaperone tail 1 33016 33465
ANT45237.1 KX241618_p15 hypothetical protein phrog_23866 unknown function unknown function 1 11663 12082
ANT45226.1 KX241618_p4 hypothetical protein singleton unknown function unknown function -1 1904 2353
ANT45223.1 KX241618_p1 nucleotide pyrophosphohydrolase phrog_229 MazG-like pyrophosphatase other -1 251 814
ANT45279.1 KX241618_p57 hypothetical protein phrog_18569 unknown function unknown function -1 45957 46262
ANT45284.1 KX241618_p62 dihydrofolate reductase phrog_13578 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 48542 48997
ANT45253.1 KX241618_p31 hypothetical protein singleton unknown function unknown function -1 27557 27799
ANT45247.1 KX241618_p25 structral protein phrog_206 head scaffolding protein head and packaging 1 24209 24985
ANT45231.1 KX241618_p9 integrase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 5169 7457
ANT45277.1 KX241618_p55 hypothetical protein phrog_8293 unknown function unknown function -1 45414 45644
ANT45285.1 KX241618_p63 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 48982 49455
ANT45255.1 KX241618_p33 hypothetical protein phrog_30814 unknown function unknown function 1 29363 29593
ANT45243.1 KX241618_p21 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 17659 18555
ANT45294.1 KX241618_p72 hypothetical protein phrog_1934 unknown function unknown function -1 57221 57667
ANT45235.1 KX241618_p13 hypothetical protein phrog_28587 unknown function unknown function 1 9209 9688
ANT45269.1 KX241618_p47 structral protein phrog_6284 tail protein tail 1 38670 42869
ANT45259.1 KX241618_p37 tail component phrog_169 tail completion or Neck1 protein connector 1 31184 31582
ANT45299.1 KX241618_p77 hypothetical protein phrog_7860 unknown function unknown function -1 59289 59465
ANT45248.1 KX241618_p26 GTP cyclohydrolase phrog_1017 unknown function unknown function -1 25034 25531
ANT45301.1 KX241618_p79 DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 59838 60449
ANT45286.1 KX241618_p64 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 49455 50420
ANT45280.1 KX241618_p58 hypothetical protein phrog_16873 unknown function unknown function -1 46262 46816
ANT45275.1 KX241618_p53 hypothetical protein phrog_6420 unknown function unknown function 1 44749 45030
ANT45250.1 KX241618_p28 hypothetical protein phrog_21393 unknown function unknown function -1 26642 27040
ANT45260.1 KX241618_p38 tail terminator protein phrog_179 tail terminator connector 1 31595 32017
ANT45288.1 KX241618_p66 hypothetical protein phrog_34935 unknown function unknown function -1 51276 51506
ANT45266.1 KX241618_p44 FAD/FMN-containing dehydrogenase phrog_778 tail assembly protein tail 1 37377 38231