| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX241618 |
Definition |
Xanthomonas phage Xoo-sp2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pamexvirus; unclassified Pamexvirus. |
DB of origin |
NUCCORE |
Length |
60497 |
Host Name |
Xanthomonas oryzae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
66.53 |
Number of singletons |
10 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANT45229.1 | KX241618_p7 | hypothetical protein | phrog_18196 | unknown function | unknown function | -1 | 4238 | 4756 |
| ANT45232.1 | KX241618_p10 | terminase small subunit | phrog_4044 | terminase small subunit | head and packaging | 1 | 8087 | 8707 |
| ANT45228.1 | KX241618_p6 | hypothetical protein | phrog_17764 | unknown function | unknown function | -1 | 3972 | 4238 |
| ANT45290.1 | KX241618_p68 | TolA protein | phrog_17205 | unknown function | unknown function | -1 | 52640 | 53098 |
| ANT45265.1 | KX241618_p43 | tail protein | phrog_1082 | tail assembly protein | tail | 1 | 36229 | 37380 |
| ANT45249.1 | KX241618_p27 | hypothetical protein | phrog_18209 | unknown function | unknown function | -1 | 25596 | 26561 |
| ANT45300.1 | KX241618_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 59480 | 59680 |
| ANT45298.1 | KX241618_p76 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 58606 | 59289 |
| ANT45241.1 | KX241618_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16902 | 17204 |
| ANT45282.1 | KX241618_p60 | hypothetical protein | phrog_35736 | unknown function | unknown function | -1 | 47774 | 48001 |
| ANT45242.1 | KX241618_p20 | 3'-phosphatase, 5'-polynucleotide kinase | phrog_415 | polynucleotide kinase | other | 1 | 17201 | 17659 |
| ANT45276.1 | KX241618_p54 | hypothetical protein | phrog_27196 | unknown function | unknown function | -1 | 45169 | 45348 |
| ANT45267.1 | KX241618_p45 | structral protein | phrog_1180 | tail assembly chaperone | tail | 1 | 38247 | 38480 |
| ANT45239.1 | KX241618_p17 | ribonucleotide reductase of class Ia (aerobic) beta subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 14097 | 15077 |
| ANT45296.1 | KX241618_p74 | hypothetical protein | phrog_18640 | unknown function | unknown function | -1 | 58050 | 58403 |
| ANT45270.1 | KX241618_p48 | structral protein | phrog_5363 | unknown function | unknown function | 1 | 42885 | 43241 |
| ANT45233.1 | KX241618_p11 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 8780 | 9022 |
| ANT45263.1 | KX241618_p41 | hypothetical protein | phrog_4966 | unknown function | unknown function | 1 | 33504 | 33746 |
| ANT45225.1 | KX241618_p3 | hypothetical protein | phrog_17547 | unknown function | unknown function | -1 | 1202 | 1867 |
| ANT45268.1 | KX241618_p46 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 38477 | 38683 |
| ANT45238.1 | KX241618_p16 | ribonucleotide reductase of class Ia (aerobic) alpha subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 12259 | 14082 |
| ANT45261.1 | KX241618_p39 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 32042 | 32980 |
| ANT45281.1 | KX241618_p59 | hypothetical protein | phrog_17767 | unknown function | unknown function | -1 | 46950 | 47549 |
| ANT45234.1 | KX241618_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9022 | 9225 |
| ANT45264.1 | KX241618_p42 | tail length tape-measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 33730 | 36225 |
| ANT45293.1 | KX241618_p71 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 54936 | 57194 |
| ANT45258.1 | KX241618_p36 | structral protein | phrog_161 | head closure Hc1 | connector | 1 | 30815 | 31180 |
| ANT45240.1 | KX241618_p18 | hypothetical protein | phrog_1735 | unknown function | unknown function | 1 | 15195 | 16832 |
| ANT45278.1 | KX241618_p56 | hypothetical protein | phrog_17853 | unknown function | unknown function | -1 | 45671 | 45973 |
| ANT45245.1 | KX241618_p23 | minor head protein | phrog_21789 | virion structural protein | head and packaging | 1 | 20187 | 23780 |
| ANT45273.1 | KX241618_p51 | hypothetical protein | phrog_739 | Rz-like spanin | lysis | 1 | 44089 | 44565 |
| ANT45297.1 | KX241618_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58400 | 58609 |
| ANT45291.1 | KX241618_p69 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 53240 | 54724 |
| ANT45252.1 | KX241618_p30 | hypothetical protein | phrog_11770 | unknown function | unknown function | -1 | 27338 | 27547 |
| ANT45257.1 | KX241618_p35 | structral protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 30286 | 30810 |
| ANT45254.1 | KX241618_p32 | major head protein | phrog_212 | major head protein | head and packaging | 1 | 28360 | 29292 |
| ANT45251.1 | KX241618_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27042 | 27326 |
| ANT45227.1 | KX241618_p5 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 2429 | 3922 |
| ANT45292.1 | KX241618_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54721 | 54939 |
| ANT45230.1 | KX241618_p8 | hypothetical protein | phrog_19009 | unknown function | unknown function | 1 | 4975 | 5133 |
| ANT45274.1 | KX241618_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44570 | 44752 |
| ANT45283.1 | KX241618_p61 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 48111 | 48557 |
| ANT45244.1 | KX241618_p22 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 18643 | 20187 |
| ANT45287.1 | KX241618_p65 | HAD superfamily hydrolase | phrog_18404 | hydrolase | other | -1 | 50417 | 51202 |
| ANT45272.1 | KX241618_p50 | endolysin | phrog_465 | endolysin | lysis | 1 | 43585 | 44079 |
| ANT45224.1 | KX241618_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 826 | 1209 |
| ANT45289.1 | KX241618_p67 | hypothetical protein | phrog_11422 | unknown function | unknown function | -1 | 51506 | 52453 |
| ANT45246.1 | KX241618_p24 | hypothetical protein | phrog_20070 | unknown function | unknown function | 1 | 23784 | 24062 |
| ANT45271.1 | KX241618_p49 | hypothetical protein | phrog_14936 | unknown function | unknown function | 1 | 43253 | 43588 |
| ANT45295.1 | KX241618_p73 | hypothetical protein | phrog_18147 | unknown function | unknown function | -1 | 57664 | 58053 |
| ANT45256.1 | KX241618_p34 | hypothetical protein | phrog_6213 | unknown function | unknown function | 1 | 29663 | 30265 |
| ANT45236.1 | KX241618_p14 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 9688 | 11160 |
| ANT45262.1 | KX241618_p40 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 33016 | 33465 |
| ANT45237.1 | KX241618_p15 | hypothetical protein | phrog_23866 | unknown function | unknown function | 1 | 11663 | 12082 |
| ANT45226.1 | KX241618_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1904 | 2353 |
| ANT45223.1 | KX241618_p1 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 251 | 814 |
| ANT45279.1 | KX241618_p57 | hypothetical protein | phrog_18569 | unknown function | unknown function | -1 | 45957 | 46262 |
| ANT45284.1 | KX241618_p62 | dihydrofolate reductase | phrog_13578 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 48542 | 48997 |
| ANT45253.1 | KX241618_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27557 | 27799 |
| ANT45247.1 | KX241618_p25 | structral protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 24209 | 24985 |
| ANT45231.1 | KX241618_p9 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 5169 | 7457 |
| ANT45277.1 | KX241618_p55 | hypothetical protein | phrog_8293 | unknown function | unknown function | -1 | 45414 | 45644 |
| ANT45285.1 | KX241618_p63 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 48982 | 49455 |
| ANT45255.1 | KX241618_p33 | hypothetical protein | phrog_30814 | unknown function | unknown function | 1 | 29363 | 29593 |
| ANT45243.1 | KX241618_p21 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 17659 | 18555 |
| ANT45294.1 | KX241618_p72 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 57221 | 57667 |
| ANT45235.1 | KX241618_p13 | hypothetical protein | phrog_28587 | unknown function | unknown function | 1 | 9209 | 9688 |
| ANT45269.1 | KX241618_p47 | structral protein | phrog_6284 | tail protein | tail | 1 | 38670 | 42869 |
| ANT45259.1 | KX241618_p37 | tail component | phrog_169 | tail completion or Neck1 protein | connector | 1 | 31184 | 31582 |
| ANT45299.1 | KX241618_p77 | hypothetical protein | phrog_7860 | unknown function | unknown function | -1 | 59289 | 59465 |
| ANT45248.1 | KX241618_p26 | GTP cyclohydrolase | phrog_1017 | unknown function | unknown function | -1 | 25034 | 25531 |
| ANT45301.1 | KX241618_p79 | DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 59838 | 60449 |
| ANT45286.1 | KX241618_p64 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 49455 | 50420 |
| ANT45280.1 | KX241618_p58 | hypothetical protein | phrog_16873 | unknown function | unknown function | -1 | 46262 | 46816 |
| ANT45275.1 | KX241618_p53 | hypothetical protein | phrog_6420 | unknown function | unknown function | 1 | 44749 | 45030 |
| ANT45250.1 | KX241618_p28 | hypothetical protein | phrog_21393 | unknown function | unknown function | -1 | 26642 | 27040 |
| ANT45260.1 | KX241618_p38 | tail terminator protein | phrog_179 | tail terminator | connector | 1 | 31595 | 32017 |
| ANT45288.1 | KX241618_p66 | hypothetical protein | phrog_34935 | unknown function | unknown function | -1 | 51276 | 51506 |
| ANT45266.1 | KX241618_p44 | FAD/FMN-containing dehydrogenase | phrog_778 | tail assembly protein | tail | 1 | 37377 | 38231 |