| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX375815 |
Definition |
Mycobacterium phage ToneTone, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
52044 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
96 |
%GC |
61.48 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANT42228.1 | KX375815_p34 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 25929 | 26318 |
| ANT42274.1 | KX375815_p82 | hypothetical protein | phrog_865 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46189 | 46347 |
| ANT42221.1 | KX375815_p27 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 21691 | 22143 |
| ANT42215.1 | KX375815_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15123 | 15725 |
| ANT42280.1 | KX375815_p92 | hypothetical protein | phrog_6665 | unknown function | unknown function | -1 | 49110 | 49223 |
| ANT42278.1 | KX375815_p89 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 48615 | 48818 |
| ANT42204.1 | KX375815_p10 | holin | phrog_526 | holin | lysis | 1 | 6978 | 7409 |
| ANT42284.1 | KX375815_p96 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 50484 | 50816 |
| ANT42199.1 | KX375815_p4 | minor tail protein | phrog_226 | minor tail protein | tail | 1 | 2482 | 2952 |
| ANT42268.1 | KX375815_p75 | hypothetical protein | phrog_5531 | unknown function | unknown function | -1 | 44635 | 44844 |
| ANT42255.1 | KX375815_p62 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 39232 | 39618 |
| ANT42249.1 | KX375815_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37130 | 37762 |
| ANT42263.1 | KX375815_p70 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42133 | 42954 |
| ANT42247.1 | KX375815_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 36589 | 37032 |
| ANT42244.1 | KX375815_p50 | hypothetical protein | phrog_5870 | unknown function | unknown function | -1 | 35013 | 35153 |
| ANT42234.1 | KX375815_p40 | hypothetical protein | phrog_3812 | unknown function | unknown function | -1 | 29362 | 29550 |
| ANT42289.1 | KX375815_p87 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 47955 | 48335 |
| ANT42225.1 | KX375815_p31 | dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 24815 | 25357 |
| ANT42223.1 | KX375815_p29 | minor tail protein | phrog_2683 | minor tail protein | tail | 1 | 22433 | 23854 |
| ANT42231.1 | KX375815_p37 | hypothetical protein | phrog_4371 | unknown function | unknown function | -1 | 27018 | 27275 |
| ANT42201.1 | KX375815_p6 | tail protein | phrog_819 | tail protein | tail | 1 | 3999 | 4574 |
| ANT42243.1 | KX375815_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34834 | 35016 |
| ANT42206.1 | KX375815_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9197 | 10663 |
| ANT42286.1 | KX375815_p7 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 4571 | 5269 |
| ANT42273.1 | KX375815_p80 | protease | phrog_1006 | unknown function | unknown function | -1 | 45584 | 46045 |
| ANT42270.1 | KX375815_p77 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 45119 | 45241 |
| ANT42198.1 | KX375815_p3 | hypothetical protein | phrog_4347 | unknown function | unknown function | 1 | 1925 | 2146 |
| ANT42254.1 | KX375815_p61 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 38879 | 39112 |
| ANT42264.1 | KX375815_p71 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 42951 | 43337 |
| ANT42246.1 | KX375815_p52 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 35822 | 36592 |
| ANT42227.1 | KX375815_p33 | hypothetical protein | phrog_5261 | unknown function | unknown function | 1 | 25681 | 25842 |
| ANT42265.1 | KX375815_p72 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 43386 | 43901 |
| ANT42267.1 | KX375815_p74 | hypothetical protein | phrog_3236 | unknown function | unknown function | -1 | 44294 | 44635 |
| ANT42271.1 | KX375815_p78 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45238 | 45501 |
| ANT42277.1 | KX375815_p86 | hypothetical protein | phrog_3256 | unknown function | unknown function | -1 | 47573 | 47929 |
| ANT42207.1 | KX375815_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10660 | 11544 |
| ANT42261.1 | KX375815_p68 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 41405 | 41704 |
| ANT42209.1 | KX375815_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12148 | 13119 |
| ANT42226.1 | KX375815_p32 | dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 25350 | 25625 |
| ANT42196.1 | KX375815_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 418 | 1176 |
| ANT42214.1 | KX375815_p20 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 14753 | 15094 |
| ANT42197.1 | KX375815_p2 | hypothetical protein | phrog_4415 | peptidase | other | 1 | 1089 | 1925 |
| ANT42290.1 | KX375815_p88 | hypothetical protein | phrog_5098 | unknown function | unknown function | -1 | 48332 | 48529 |
| ANT42202.1 | KX375815_p8 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 5606 | 5764 |
| ANT42259.1 | KX375815_p66 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 41017 | 41154 |
| ANT42222.1 | KX375815_p28 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 22140 | 22436 |
| ANT42281.1 | KX375815_p93 | hypothetical protein | phrog_3831 | unknown function | unknown function | -1 | 49225 | 49422 |
| ANT42256.1 | KX375815_p63 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 39615 | 39971 |
| ANT42287.1 | KX375815_p81 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 46049 | 46180 |
| ANT42272.1 | KX375815_p79 | hypothetical protein | phrog_9760 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 45498 | 45629 |
| ANT42253.1 | KX375815_p60 | hypothetical protein | phrog_3369 | unknown function | unknown function | -1 | 38733 | 38882 |
| ANT42212.1 | KX375815_p18 | head-to-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 13957 | 14325 |
| ANT42260.1 | KX375815_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41151 | 41408 |
| ANT42275.1 | KX375815_p84 | DNA methylase | phrog_1008 | DNA methyltransferase | other | -1 | 46580 | 47116 |
| ANT42208.1 | KX375815_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11594 | 12115 |
| ANT42238.1 | KX375815_p44 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 30864 | 31070 |
| ANT42251.1 | KX375815_p58 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38124 | 38627 |
| ANT42210.1 | KX375815_p16 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13392 | 13769 |
| ANT42235.1 | KX375815_p41 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 29547 | 29885 |
| ANT42266.1 | KX375815_p73 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 44137 | 44289 |
| ANT42200.1 | KX375815_p5 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 3037 | 3999 |
| ANT42282.1 | KX375815_p94 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 49431 | 50141 |
| ANT42257.1 | KX375815_p64 | hypothetical protein | phrog_1374 | unknown function | unknown function | -1 | 39986 | 40165 |
| ANT42241.1 | KX375815_p47 | endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32484 | 32786 |
| ANT42203.1 | KX375815_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 5764 | 6978 |
| ANT42224.1 | KX375815_p30 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 23865 | 24149 |
| ANT42230.1 | KX375815_p36 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 26719 | 27021 |
| ANT42245.1 | KX375815_p51 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35150 | 35818 |
| ANT42211.1 | KX375815_p17 | head-to-tail connector | phrog_830 | head-tail connector protein | connector | 1 | 13766 | 13957 |
| ANT42291.1 | KX375815_p90 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 48818 | 48994 |
| ANT42237.1 | KX375815_p43 | helix-turn-helix DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30436 | 30864 |
| ANT42220.1 | KX375815_p26 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19903 | 21675 |
| ANT42216.1 | KX375815_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15774 | 16241 |
| ANT42236.1 | KX375815_p42 | RNA ligase | phrog_548 | RNA ligase | DNA, RNA and nucleotide metabolism | -1 | 29885 | 30436 |
| ANT42229.1 | KX375815_p35 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 26315 | 26722 |
| ANT42242.1 | KX375815_p48 | ribonucleoside reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32783 | 34837 |
| ANT42258.1 | KX375815_p65 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40198 | 40944 |
| ANT42233.1 | KX375815_p39 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27513 | 29354 |
| ANT42269.1 | KX375815_p76 | hypothetical protein | phrog_3963 | unknown function | unknown function | -1 | 44841 | 45110 |
| ANT42279.1 | KX375815_p91 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 48982 | 49110 |
| ANT42276.1 | KX375815_p85 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 47049 | 47576 |
| ANT42205.1 | KX375815_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7446 | 9200 |
| ANT42239.1 | KX375815_p45 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 31072 | 31800 |
| ANT42218.1 | KX375815_p24 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16647 | 18863 |
| ANT42283.1 | KX375815_p95 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 50144 | 50341 |
| ANT42288.1 | KX375815_p83 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 46350 | 46559 |
| ANT42232.1 | KX375815_p38 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 27272 | 27490 |
| ANT42240.1 | KX375815_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 31927 | 32472 |
| ANT42250.1 | KX375815_p57 | hypothetical protein | phrog_4886 | unknown function | unknown function | -1 | 37976 | 38131 |
| ANT42285.1 | KX375815_p56 | hypothetical protein | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37590 | 37979 |
| ANT42213.1 | KX375815_p19 | head-to-tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14325 | 14678 |
| ANT42262.1 | KX375815_p69 | hypothetical protein | phrog_6023 | unknown function | unknown function | -1 | 41710 | 42084 |
| ANT42217.1 | KX375815_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15774 | 16654 |
| ANT42219.1 | KX375815_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18890 | 19906 |
| ANT42252.1 | KX375815_p59 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 38596 | 38736 |
| ANT42248.1 | KX375815_p54 | hypothetical protein | phrog_2264 | unknown function | unknown function | -1 | 37029 | 37130 |