| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX379665 |
Definition |
Lactococcus phage i0139, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
29513 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
35.09 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANY28930.1 | KX379665_p26 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19108 | 19356 |
| ANY28940.1 | KX379665_p36 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 22112 | 22471 |
| ANY28948.1 | KX379665_p44 | hypothetical protein | phrog_12970 | unknown function | unknown function | -1 | 25808 | 26005 |
| ANY28954.1 | KX379665_p50 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 28140 | 28271 |
| ANY28936.1 | KX379665_p32 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 20539 | 20868 |
| ANY28945.1 | KX379665_p41 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 24089 | 24469 |
| ANY28905.1 | KX379665_p1 | small terminase | phrog_1437 | terminase small subunit | head and packaging | 1 | 250 | 774 |
| ANY28934.1 | KX379665_p30 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 20197 | 20439 |
| ANY28933.1 | KX379665_p29 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20020 | 20139 |
| ANY28943.1 | KX379665_p39 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 23582 | 23848 |
| ANY28956.1 | KX379665_p52 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 28747 | 28914 |
| ANY28928.1 | KX379665_p24 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18425 | 18772 |
| ANY28911.1 | KX379665_p7 | structural protein 1 | phrog_1428 | head-tail connector protein | connector | 1 | 5553 | 5816 |
| ANY28920.1 | KX379665_p16 | Dit protein | phrog_1424 | tail protein | tail | 1 | 13190 | 14086 |
| ANY28906.1 | KX379665_p2 | large terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 775 | 2397 |
| ANY28914.1 | KX379665_p10 | structural protein 4 | phrog_1440 | virion structural protein | head and packaging | 1 | 6459 | 6824 |
| ANY28925.1 | KX379665_p21 | lysin | phrog_670 | endolysin | lysis | 1 | 16667 | 17371 |
| ANY28908.1 | KX379665_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2685 | 3821 |
| ANY28950.1 | KX379665_p46 | hypothetical protein | phrog_5487 | unknown function | unknown function | -1 | 26200 | 26364 |
| ANY28929.1 | KX379665_p25 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 18772 | 18939 |
| ANY28947.1 | KX379665_p43 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 24776 | 25726 |
| ANY28924.1 | KX379665_p20 | holin | phrog_1379 | unknown function | unknown function | 1 | 16317 | 16670 |
| ANY28941.1 | KX379665_p37 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 22475 | 23098 |
| ANY28915.1 | KX379665_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6880 | 8418 |
| ANY28951.1 | KX379665_p47 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 26866 | 26985 |
| ANY28949.1 | KX379665_p45 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 26027 | 26185 |
| ANY28926.1 | KX379665_p22 | lytic transglycosylase | phrog_3874 | transglycosylase | other | -1 | 17449 | 17925 |
| ANY28923.1 | KX379665_p19 | receptor-binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 15486 | 16295 |
| ANY28909.1 | KX379665_p5 | head protease | phrog_80 | head maturation protease | head and packaging | 1 | 3822 | 4358 |
| ANY28921.1 | KX379665_p17 | Tal protein | phrog_1432 | tail associated lysin | tail | 1 | 14086 | 15213 |
| ANY28931.1 | KX379665_p27 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 19436 | 19633 |
| ANY28912.1 | KX379665_p8 | structural protein 2 | phrog_1429 | virion structural protein | head and packaging | 1 | 5816 | 6130 |
| ANY28955.1 | KX379665_p51 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28268 | 28750 |
| ANY28939.1 | KX379665_p35 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 21881 | 22096 |
| ANY28952.1 | KX379665_p48 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27380 | 27871 |
| ANY28938.1 | KX379665_p34 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 21372 | 21884 |
| ANY28907.1 | KX379665_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2387 | 2671 |
| ANY28917.1 | KX379665_p13 | structural protein 5 | phrog_1420 | virion structural protein | head and packaging | 1 | 9384 | 9659 |
| ANY28937.1 | KX379665_p33 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 20865 | 21290 |
| ANY28916.1 | KX379665_p12 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 8441 | 9346 |
| ANY28918.1 | KX379665_p14 | structural protein 6 | phrog_1421 | virion structural protein | head and packaging | 1 | 9679 | 10191 |
| ANY28932.1 | KX379665_p28 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19712 | 20020 |
| ANY28944.1 | KX379665_p40 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 23802 | 24092 |
| ANY28953.1 | KX379665_p49 | middle expressed protein 1 | phrog_1952 | unknown function | unknown function | 1 | 28007 | 28147 |
| ANY28927.1 | KX379665_p23 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 17986 | 18252 |
| ANY28935.1 | KX379665_p31 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 20439 | 20549 |
| ANY28910.1 | KX379665_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4351 | 5532 |
| ANY28913.1 | KX379665_p9 | structural protein 3 | phrog_1484 | virion structural protein | head and packaging | 1 | 6127 | 6468 |
| ANY28946.1 | KX379665_p42 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 24526 | 24783 |
| ANY28922.1 | KX379665_p18 | structural protein 7 | phrog_1434 | unknown function | unknown function | 1 | 15203 | 15496 |
| ANY28919.1 | KX379665_p15 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10191 | 13190 |
| ANY28942.1 | KX379665_p38 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23095 | 23595 |