Genomic map of Lactococcus phage i0139 (KX379665)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX379665
Definition
Lactococcus phage i0139, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
NUCCORE
Length
29513
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
35.09
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ANY28930.1 KX379665_p26 hypothetical protein phrog_1509 unknown function unknown function -1 19108 19356
ANY28940.1 KX379665_p36 SSB protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 22112 22471
ANY28948.1 KX379665_p44 hypothetical protein phrog_12970 unknown function unknown function -1 25808 26005
ANY28954.1 KX379665_p50 middle expressed protein 2 phrog_1436 unknown function unknown function 1 28140 28271
ANY28936.1 KX379665_p32 hypothetical protein phrog_1919 unknown function unknown function -1 20539 20868
ANY28945.1 KX379665_p41 hypothetical protein phrog_2228 unknown function unknown function -1 24089 24469
ANY28905.1 KX379665_p1 small terminase phrog_1437 terminase small subunit head and packaging 1 250 774
ANY28934.1 KX379665_p30 hypothetical protein phrog_1825 DNA methyltransferase other -1 20197 20439
ANY28933.1 KX379665_p29 hypothetical protein phrog_1508 unknown function unknown function -1 20020 20139
ANY28943.1 KX379665_p39 hypothetical protein phrog_1449 unknown function unknown function -1 23582 23848
ANY28956.1 KX379665_p52 middle expressed protein 4 phrog_1652 unknown function unknown function 1 28747 28914
ANY28928.1 KX379665_p24 hypothetical protein phrog_1415 unknown function unknown function -1 18425 18772
ANY28911.1 KX379665_p7 structural protein 1 phrog_1428 head-tail connector protein connector 1 5553 5816
ANY28920.1 KX379665_p16 Dit protein phrog_1424 tail protein tail 1 13190 14086
ANY28906.1 KX379665_p2 large terminase phrog_9 terminase large subunit head and packaging 1 775 2397
ANY28914.1 KX379665_p10 structural protein 4 phrog_1440 virion structural protein head and packaging 1 6459 6824
ANY28925.1 KX379665_p21 lysin phrog_670 endolysin lysis 1 16667 17371
ANY28908.1 KX379665_p4 portal protein phrog_12 portal protein head and packaging 1 2685 3821
ANY28950.1 KX379665_p46 hypothetical protein phrog_5487 unknown function unknown function -1 26200 26364
ANY28929.1 KX379665_p25 hypothetical protein phrog_1441 unknown function unknown function -1 18772 18939
ANY28947.1 KX379665_p43 DNA polymerase phrog_1284 unknown function unknown function -1 24776 25726
ANY28924.1 KX379665_p20 holin phrog_1379 unknown function unknown function 1 16317 16670
ANY28941.1 KX379665_p37 SAK protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 22475 23098
ANY28915.1 KX379665_p11 neck passage structure phrog_2370 neck passage structure connector 1 6880 8418
ANY28951.1 KX379665_p47 hypothetical protein phrog_2413 unknown function unknown function -1 26866 26985
ANY28949.1 KX379665_p45 hypothetical protein phrog_4505 unknown function unknown function -1 26027 26185
ANY28926.1 KX379665_p22 lytic transglycosylase phrog_3874 transglycosylase other -1 17449 17925
ANY28923.1 KX379665_p19 receptor-binding protein phrog_1630 receptor binding tail protein tail 1 15486 16295
ANY28909.1 KX379665_p5 head protease phrog_80 head maturation protease head and packaging 1 3822 4358
ANY28921.1 KX379665_p17 Tal protein phrog_1432 tail associated lysin tail 1 14086 15213
ANY28931.1 KX379665_p27 hypothetical protein phrog_6037 unknown function unknown function -1 19436 19633
ANY28912.1 KX379665_p8 structural protein 2 phrog_1429 virion structural protein head and packaging 1 5816 6130
ANY28955.1 KX379665_p51 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28268 28750
ANY28939.1 KX379665_p35 hypothetical protein phrog_1295 unknown function unknown function -1 21881 22096
ANY28952.1 KX379665_p48 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 27380 27871
ANY28938.1 KX379665_p34 hypothetical protein phrog_1317 unknown function unknown function -1 21372 21884
ANY28907.1 KX379665_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2387 2671
ANY28917.1 KX379665_p13 structural protein 5 phrog_1420 virion structural protein head and packaging 1 9384 9659
ANY28937.1 KX379665_p33 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 20865 21290
ANY28916.1 KX379665_p12 major capsid protein phrog_1433 major tail protein tail 1 8441 9346
ANY28918.1 KX379665_p14 structural protein 6 phrog_1421 virion structural protein head and packaging 1 9679 10191
ANY28932.1 KX379665_p28 hypothetical protein phrog_1225 unknown function unknown function -1 19712 20020
ANY28944.1 KX379665_p40 hypothetical protein phrog_1632 unknown function unknown function -1 23802 24092
ANY28953.1 KX379665_p49 middle expressed protein 1 phrog_1952 unknown function unknown function 1 28007 28147
ANY28927.1 KX379665_p23 hypothetical protein phrog_1430 unknown function unknown function -1 17986 18252
ANY28935.1 KX379665_p31 hypothetical protein phrog_4546 unknown function unknown function -1 20439 20549
ANY28910.1 KX379665_p6 major capsid protein phrog_1393 minor head protein head and packaging 1 4351 5532
ANY28913.1 KX379665_p9 structural protein 3 phrog_1484 virion structural protein head and packaging 1 6127 6468
ANY28946.1 KX379665_p42 hypothetical protein phrog_1405 unknown function unknown function -1 24526 24783
ANY28922.1 KX379665_p18 structural protein 7 phrog_1434 unknown function unknown function 1 15203 15496
ANY28919.1 KX379665_p15 tape measure protein phrog_58 tail length tape measure protein tail 1 10191 13190
ANY28942.1 KX379665_p38 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 23095 23595