| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX379668 |
Definition |
Lactococcus phage 4R16L2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30913 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.57 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANY28811.1 | KX379668_p22 | holin | phrog_1379 | unknown function | unknown function | 1 | 16959 | 17312 |
| ANY28820.1 | KX379668_p31 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20356 | 20547 |
| ANY28798.1 | KX379668_p9 | structural protein 2 | phrog_1429 | virion structural protein | head and packaging | 1 | 6274 | 6588 |
| ANY28816.1 | KX379668_p27 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19222 | 19491 |
| ANY28795.1 | KX379668_p6 | head protease | phrog_80 | head maturation protease | head and packaging | 1 | 4280 | 4816 |
| ANY28799.1 | KX379668_p10 | structural protein 3 | phrog_1484 | virion structural protein | head and packaging | 1 | 6585 | 6926 |
| ANY28793.1 | KX379668_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2866 | 3150 |
| ANY28802.1 | KX379668_p13 | tail fiber protein | phrog_5983 | tail protein | tail | 1 | 8202 | 8882 |
| ANY28828.1 | KX379668_p39 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22545 | 22967 |
| ANY28841.1 | KX379668_p52 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 28314 | 28433 |
| ANY28831.1 | KX379668_p42 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23784 | 24143 |
| ANY28797.1 | KX379668_p8 | structural protein 1 | phrog_1428 | head-tail connector protein | connector | 1 | 6011 | 6274 |
| ANY28809.1 | KX379668_p20 | receptor-binding protein 1 | phrog_22544 | unknown function | unknown function | 1 | 15012 | 16142 |
| ANY28846.1 | KX379668_p57 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 29918 | 30085 |
| ANY28812.1 | KX379668_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17309 | 18016 |
| ANY28837.1 | KX379668_p48 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 26060 | 26242 |
| ANY28810.1 | KX379668_p21 | receptor-binding protein 2 | phrog_1630 | receptor binding tail protein | tail | 1 | 16143 | 16937 |
| ANY28832.1 | KX379668_p43 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24148 | 24795 |
| ANY28839.1 | KX379668_p50 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 27178 | 27399 |
| ANY28791.1 | KX379668_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 791 | 1252 |
| ANY28836.1 | KX379668_p47 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25837 | 26097 |
| ANY28804.1 | KX379668_p15 | structural protein 6 | phrog_1421 | virion structural protein | head and packaging | 1 | 9198 | 9710 |
| ANY28834.1 | KX379668_p45 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25267 | 25533 |
| ANY28819.1 | KX379668_p30 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 20011 | 20178 |
| ANY28829.1 | KX379668_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23047 | 23559 |
| ANY28796.1 | KX379668_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4809 | 5990 |
| ANY28827.1 | KX379668_p38 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22246 | 22548 |
| ANY28808.1 | KX379668_p19 | structural protein 7 | phrog_1434 | unknown function | unknown function | 1 | 14735 | 15010 |
| ANY28835.1 | KX379668_p46 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25487 | 25777 |
| ANY28801.1 | KX379668_p12 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 7295 | 8200 |
| ANY28845.1 | KX379668_p56 | holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29439 | 29921 |
| ANY28814.1 | KX379668_p25 | hypothetical protein | phrog_35117 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 18737 | 18889 |
| ANY28800.1 | KX379668_p11 | structural protein 4 | phrog_1440 | virion structural protein | head and packaging | 1 | 6917 | 7282 |
| ANY28838.1 | KX379668_p49 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 26235 | 27185 |
| ANY28805.1 | KX379668_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9710 | 12700 |
| ANY28840.1 | KX379668_p51 | hypothetical protein | phrog_5487 | unknown function | unknown function | -1 | 27647 | 27817 |
| ANY28830.1 | KX379668_p41 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23556 | 23771 |
| ANY28818.1 | KX379668_p29 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19664 | 20011 |
| ANY28842.1 | KX379668_p53 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28859 | 29047 |
| ANY28790.1 | KX379668_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 270 | 794 |
| ANY28825.1 | KX379668_p36 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21859 | 22101 |
| ANY28833.1 | KX379668_p44 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24780 | 25280 |
| ANY28807.1 | KX379668_p18 | Tal protein | phrog_1432 | tail associated lysin | tail | 1 | 13634 | 14734 |
| ANY28803.1 | KX379668_p14 | structural protein 5 | phrog_1420 | virion structural protein | head and packaging | 1 | 8903 | 9178 |
| ANY28843.1 | KX379668_p54 | middle expressed protein 1 | phrog_1952 | unknown function | unknown function | 1 | 29178 | 29306 |
| ANY28826.1 | KX379668_p37 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 22102 | 22212 |
| ANY28847.1 | KX379668_p58 | middle expressed protein 5 | phrog_6252 | unknown function | unknown function | 1 | 30682 | 30810 |
| ANY28815.1 | KX379668_p26 | HNH endonuclease | phrog_30377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 18843 | 19091 |
| ANY28794.1 | KX379668_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3163 | 4299 |
| ANY28821.1 | KX379668_p32 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20589 | 20840 |
| ANY28813.1 | KX379668_p24 | lytic transglycosylase | phrog_3874 | transglycosylase | other | -1 | 18108 | 18731 |
| ANY28792.1 | KX379668_p3 | large terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 1254 | 2876 |
| ANY28823.1 | KX379668_p34 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 21377 | 21682 |
| ANY28822.1 | KX379668_p33 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 20911 | 21405 |
| ANY28806.1 | KX379668_p17 | Dit protein | phrog_1424 | tail protein | tail | 1 | 12700 | 13632 |
| ANY28817.1 | KX379668_p28 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 19488 | 19667 |
| ANY28824.1 | KX379668_p35 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21682 | 21801 |
| ANY28844.1 | KX379668_p55 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 29311 | 29442 |