| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX379670 |
Definition |
Lactococcus phage 19W07F, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30890 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
34.68 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANY28690.1 | KX379670_p12 | neck passage structure | phrog_7918 | neck passage structure protein | connector | 1 | 7427 | 10015 |
| ANY28727.1 | KX379670_p49 | middle expressed protein 1 | phrog_1952 | unknown function | unknown function | 1 | 29669 | 29797 |
| ANY28726.1 | KX379670_p48 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 29363 | 29551 |
| ANY28729.1 | KX379670_p51 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29930 | 30409 |
| ANY28701.1 | KX379670_p23 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18754 | 19020 |
| ANY28688.1 | KX379670_p10 | structural protein 3 | phrog_1484 | virion structural protein | head and packaging | 1 | 6673 | 7014 |
| ANY28699.1 | KX379670_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17527 | 17880 |
| ANY28714.1 | KX379670_p36 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23838 | 24347 |
| ANY28712.1 | KX379670_p34 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23053 | 23475 |
| ANY28724.1 | KX379670_p46 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 28196 | 28351 |
| ANY28706.1 | KX379670_p28 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20119 | 20370 |
| ANY28681.1 | KX379670_p3 | large terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 1342 | 2964 |
| ANY28697.1 | KX379670_p19 | structural protein 7 | phrog_1434 | unknown function | unknown function | 1 | 16461 | 16754 |
| ANY28693.1 | KX379670_p15 | structural protein 6 | phrog_1421 | virion structural protein | head and packaging | 1 | 11426 | 11938 |
| ANY28696.1 | KX379670_p18 | Tal protein | phrog_1432 | tail associated lysin | tail | 1 | 15344 | 16471 |
| ANY28710.1 | KX379670_p32 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21820 | 22698 |
| ANY28709.1 | KX379670_p31 | hypothetical protein | phrog_1071 | DNA methyltransferase | other | -1 | 21102 | 21764 |
| ANY28721.1 | KX379670_p43 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26496 | 26882 |
| ANY28716.1 | KX379670_p38 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24575 | 24934 |
| ANY28694.1 | KX379670_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11938 | 14448 |
| ANY28715.1 | KX379670_p37 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24344 | 24559 |
| ANY28692.1 | KX379670_p14 | structural protein 5 | phrog_1420 | virion structural protein | head and packaging | 1 | 11131 | 11406 |
| ANY28687.1 | KX379670_p9 | structural protein 2 | phrog_1429 | virion structural protein | head and packaging | 1 | 6362 | 6676 |
| ANY28730.1 | KX379670_p52 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 30410 | 30571 |
| ANY28689.1 | KX379670_p11 | structural protein 4 | phrog_1440 | virion structural protein | head and packaging | 1 | 7005 | 7370 |
| ANY28718.1 | KX379670_p40 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25502 | 26002 |
| ANY28679.1 | KX379670_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 358 | 882 |
| ANY28725.1 | KX379670_p47 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 28865 | 28993 |
| ANY28695.1 | KX379670_p17 | Dit protein | phrog_1424 | tail protein | tail | 1 | 14448 | 15344 |
| ANY28686.1 | KX379670_p8 | structural protein 1 | phrog_1428 | head-tail connector protein | connector | 1 | 6099 | 6362 |
| ANY28700.1 | KX379670_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17877 | 18653 |
| ANY28691.1 | KX379670_p13 | major protein | phrog_1433 | major tail protein | tail | 1 | 10187 | 11092 |
| ANY28684.1 | KX379670_p6 | head protease | phrog_80 | head maturation protease | head and packaging | 1 | 4368 | 4904 |
| ANY28702.1 | KX379670_p24 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 19017 | 19196 |
| ANY28683.1 | KX379670_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3251 | 4387 |
| ANY28711.1 | KX379670_p33 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22742 | 23056 |
| ANY28680.1 | KX379670_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 879 | 1340 |
| ANY28704.1 | KX379670_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19537 | 19707 |
| ANY28708.1 | KX379670_p30 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20977 | 21096 |
| ANY28713.1 | KX379670_p35 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 23582 | 23755 |
| ANY28698.1 | KX379670_p20 | receptor-binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16744 | 17505 |
| ANY28722.1 | KX379670_p44 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 26933 | 27196 |
| ANY28705.1 | KX379670_p27 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19885 | 20076 |
| ANY28719.1 | KX379670_p41 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25989 | 26255 |
| ANY28720.1 | KX379670_p42 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26212 | 26499 |
| ANY28703.1 | KX379670_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19193 | 19540 |
| ANY28728.1 | KX379670_p50 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 29802 | 29933 |
| ANY28717.1 | KX379670_p39 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24939 | 25517 |
| ANY28685.1 | KX379670_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4897 | 6078 |
| ANY28723.1 | KX379670_p45 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27189 | 28139 |
| ANY28682.1 | KX379670_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2954 | 3238 |
| ANY28707.1 | KX379670_p29 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20669 | 20977 |