| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX379671 |
Definition |
Lactococcus phage 13W11L, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
29952 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
34.7 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ANY28640.1 | KX379671_p15 | structural protein 6 | phrog_1421 | virion structural protein | head and packaging | 1 | 10970 | 11482 |
| ANY28650.1 | KX379671_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18737 | 19084 |
| ANY28627.1 | KX379671_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 875 | 1336 |
| ANY28661.1 | KX379671_p36 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 23019 | 23129 |
| ANY28633.1 | KX379671_p8 | structural protein 1 | phrog_1428 | head-tail connector protein | connector | 1 | 6095 | 6358 |
| ANY28638.1 | KX379671_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 9731 | 10636 |
| ANY28632.1 | KX379671_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4893 | 6074 |
| ANY28626.1 | KX379671_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 354 | 878 |
| ANY28656.1 | KX379671_p31 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20520 | 20639 |
| ANY28654.1 | KX379671_p29 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 19985 | 20137 |
| ANY28644.1 | KX379671_p19 | structural protein 7 | phrog_1434 | unknown function | unknown function | 1 | 16005 | 16298 |
| ANY28635.1 | KX379671_p10 | structural protein 3 | phrog_1484 | virion structural protein | head and packaging | 1 | 6669 | 7010 |
| ANY28660.1 | KX379671_p35 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22596 | 23018 |
| ANY28647.1 | KX379671_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17421 | 18197 |
| ANY28663.1 | KX379671_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23382 | 23891 |
| ANY28648.1 | KX379671_p23 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18298 | 18564 |
| ANY28672.1 | KX379671_p47 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 27241 | 27396 |
| ANY28673.1 | KX379671_p48 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27910 | 28038 |
| ANY28628.1 | KX379671_p3 | large terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 1338 | 2960 |
| ANY28639.1 | KX379671_p14 | structural protein 5 | phrog_1420 | virion structural protein | head and packaging | 1 | 10675 | 10950 |
| ANY28634.1 | KX379671_p9 | structural protein 2 | phrog_1429 | virion structural protein | head and packaging | 1 | 6358 | 6672 |
| ANY28667.1 | KX379671_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25033 | 25299 |
| ANY28630.1 | KX379671_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3247 | 4383 |
| ANY28666.1 | KX379671_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24480 | 25046 |
| ANY28631.1 | KX379671_p6 | head protease | phrog_80 | head maturation protease | head and packaging | 1 | 4364 | 4900 |
| ANY28665.1 | KX379671_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24116 | 24475 |
| ANY28637.1 | KX379671_p12 | neck passage structure | phrog_27126 | neck protein | connector | 1 | 7423 | 9609 |
| ANY28675.1 | KX379671_p50 | middle expressed protein 1 | phrog_1952 | unknown function | unknown function | 1 | 28727 | 28855 |
| ANY28636.1 | KX379671_p11 | structural protein 4 | phrog_1440 | virion structural protein | head and packaging | 1 | 7001 | 7366 |
| ANY28655.1 | KX379671_p30 | SaV protein | phrog_1225 | unknown function | unknown function | -1 | 20212 | 20520 |
| ANY28629.1 | KX379671_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2950 | 3234 |
| ANY28677.1 | KX379671_p52 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28988 | 29467 |
| ANY28657.1 | KX379671_p32 | hypothetical protein | phrog_1071 | DNA methyltransferase | other | -1 | 20645 | 21307 |
| ANY28652.1 | KX379671_p27 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19429 | 19620 |
| ANY28653.1 | KX379671_p28 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19663 | 19914 |
| ANY28670.1 | KX379671_p45 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25977 | 26240 |
| ANY28678.1 | KX379671_p53 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 29468 | 29629 |
| ANY28651.1 | KX379671_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19081 | 19251 |
| ANY28649.1 | KX379671_p24 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 18561 | 18740 |
| ANY28674.1 | KX379671_p49 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28408 | 28596 |
| ANY28642.1 | KX379671_p17 | Dit protein | phrog_1424 | tail protein | tail | 1 | 13992 | 14888 |
| ANY28659.1 | KX379671_p34 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22285 | 22599 |
| ANY28646.1 | KX379671_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17071 | 17424 |
| ANY28669.1 | KX379671_p44 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 25540 | 25926 |
| ANY28641.1 | KX379671_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11482 | 13992 |
| ANY28676.1 | KX379671_p51 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 28860 | 28991 |
| ANY28662.1 | KX379671_p37 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 23126 | 23299 |
| ANY28645.1 | KX379671_p20 | receptor-binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16288 | 17049 |
| ANY28668.1 | KX379671_p43 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25253 | 25543 |
| ANY28643.1 | KX379671_p18 | Tal protein | phrog_1432 | tail associated lysin | tail | 1 | 14888 | 16015 |
| ANY28671.1 | KX379671_p46 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 26233 | 27183 |
| ANY28664.1 | KX379671_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23888 | 24103 |
| ANY28658.1 | KX379671_p33 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21363 | 22241 |