Genomic map of Phage MedPE-SWcel-C56 (KX397280)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX397280
Definition
Phage MedPE-SWcel-C56, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Kafavirus; Kawavirus SWcelC56.
DB of origin
NUCCORE
Length
45260
Host Name
Rhizobium etli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
55.5
Number of singletons
27
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ANS06237.1 KX397280_p44 protein of an unannotated phage phrog_342 internal virion protein with endolysin domain head and packaging 1 33638 37003
ANS06234.1 KX397280_p41 protein of an unannotated phage phrog_457 tail protein tail 1 27427 29772
ANS06231.1 KX397280_p38 protein of an unannotated phage singleton unknown function unknown function 1 24893 25690
ANS06216.1 KX397280_p23 protein of an unannotated phage phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 12762 13712
ANS06200.1 KX397280_p7 protein of an unannotated phage singleton unknown function unknown function 1 3945 4316
ANS06232.1 KX397280_p39 protein of an unannotated phage phrog_267 major head protein head and packaging 1 25743 26717
ANS06223.1 KX397280_p30 protein of an unannotated phage singleton unknown function unknown function 1 18996 19205
ANS06196.1 KX397280_p3 protein of an unannotated phage phrog_1448 unknown function unknown function 1 2447 2995
ANS06230.1 KX397280_p37 protein of an unannotated phage phrog_449 head-tail adaptor connector 1 23318 24889
ANS06244.1 KX397280_p51 protein of an unannotated phage phrog_3427 holin lysis 1 42581 43021
ANS06239.1 KX397280_p46 protein of an unannotated phage singleton unknown function unknown function 1 39210 39458
ANS06218.1 KX397280_p25 protein of an unannotated phage singleton unknown function unknown function 1 14130 14333
ANS06202.1 KX397280_p9 protein of an unannotated phage singleton unknown function unknown function 1 4536 4694
ANS06208.1 KX397280_p15 protein of an unannotated phage singleton unknown function unknown function 1 6550 7053
ANS06204.1 KX397280_p11 protein of an unannotated phage singleton unknown function unknown function 1 5314 5565
ANS06236.1 KX397280_p43 protein of an unannotated phage singleton unknown function unknown function 1 30346 33618
ANS06246.1 KX397280_p53 protein of an unannotated phage phrog_5939 tail protein tail 1 43296 44942
ANS06214.1 KX397280_p21 protein of an unannotated phage phrog_7045 holin lysis 1 11638 11907
ANS06225.1 KX397280_p32 protein of an unannotated phage phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 19383 19775
ANS06238.1 KX397280_p45 protein of an unannotated phage singleton unknown function unknown function 1 37062 39200
ANS06229.1 KX397280_p36 protein of an unannotated phage singleton unknown function unknown function 1 23013 23318
ANS06241.1 KX397280_p48 protein of an unannotated phage phrog_38 terminase large subunit head and packaging 1 39817 41589
ANS06203.1 KX397280_p10 protein of an unannotated phage singleton unknown function unknown function 1 4691 5317
ANS06209.1 KX397280_p16 protein of an unannotated phage singleton unknown function unknown function 1 7056 7397
ANS06195.1 KX397280_p2 protein of an unannotated phage phrog_36318 unknown function unknown function 1 279 509
ANS06213.1 KX397280_p20 protein of an unannotated phage phrog_1745 DNA transfer protein other 1 9941 11638
ANS06212.1 KX397280_p19 protein of an unannotated phage phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8422 9702
ANS06194.1 KX397280_p1 protein of an unannotated phage singleton unknown function unknown function 1 45004 45260
ANS06194.1 KX397280_p1 protein of an unannotated phage singleton unknown function unknown function 1 1 172
ANS06198.1 KX397280_p5 protein of an unannotated phage singleton unknown function unknown function 1 3450 3638
ANS06199.1 KX397280_p6 protein of an unannotated phage singleton unknown function unknown function 1 3728 3922
ANS06233.1 KX397280_p40 protein of an unannotated phage phrog_446 tail protein tail 1 26810 27409
ANS06211.1 KX397280_p18 protein of an unannotated phage singleton unknown function unknown function 1 8139 8432
ANS06217.1 KX397280_p24 protein of an unannotated phage phrog_15166 unknown function unknown function 1 13705 14133
ANS06226.1 KX397280_p33 protein of an unannotated phage phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 19814 22252
ANS06215.1 KX397280_p22 protein of an unannotated phage phrog_139 deoxynucleoside monophosphate kinase other 1 12211 12777
ANS06224.1 KX397280_p31 protein of an unannotated phage singleton unknown function unknown function 1 19202 19378
ANS06235.1 KX397280_p42 protein of an unannotated phage phrog_805 internal virion protein head and packaging 1 29769 30344
ANS06205.1 KX397280_p12 protein of an unannotated phage singleton unknown function unknown function 1 5568 5774
ANS06243.1 KX397280_p50 protein of an unannotated phage phrog_181 endolysin lysis 1 41980 42633
ANS06219.1 KX397280_p26 protein of an unannotated phage phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 14317 16668
ANS06197.1 KX397280_p4 protein of an unannotated phage singleton unknown function unknown function 1 3091 3414
ANS06206.1 KX397280_p13 protein of an unannotated phage singleton unknown function unknown function 1 5771 6040
ANS06227.1 KX397280_p34 protein of an unannotated phage singleton unknown function unknown function 1 22381 22608
ANS06207.1 KX397280_p14 protein of an unannotated phage singleton unknown function unknown function 1 6115 6477
ANS06221.1 KX397280_p28 protein of an unannotated phage phrog_862 unknown function unknown function 1 17010 17909
ANS06242.1 KX397280_p49 protein of an unannotated phage singleton unknown function unknown function 1 41600 41983
ANS06228.1 KX397280_p35 protein of an unannotated phage phrog_1249 acetyltransferase other 1 22602 23009
ANS06240.1 KX397280_p47 protein of an unannotated phage phrog_891 terminase small subunit head and packaging 1 39468 39824
ANS06222.1 KX397280_p29 protein of an unannotated phage phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 17909 19009
ANS06245.1 KX397280_p52 protein of an unannotated phage singleton unknown function unknown function 1 43021 43296
ANS06220.1 KX397280_p27 protein of an unannotated phage singleton unknown function unknown function 1 16655 16999
ANS06210.1 KX397280_p17 protein of an unannotated phage phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 7342 8142
ANS06201.1 KX397280_p8 protein of an unannotated phage singleton unknown function unknown function 1 4304 4543