Genomic map of Staphylococcus phage StAP1 (KX532239)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX532239
Definition
Staphylococcus phage StAP1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Silviavirus; unclassified Silviavirus.
DB of origin
NUCCORE
Length
135502
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
192
%GC
30
Number of singletons
3
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APC42943.1 KX532239_p78 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 66931 68370
APC43025.1 KX532239_p160 hypothetical protein phrog_24081 unknown function unknown function 1 120487 121224
APC42908.1 KX532239_p43 hypothetical protein phrog_1205 unknown function unknown function 1 27723 27956
APC42869.1 KX532239_p4 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 1647 2276
APC42975.1 KX532239_p110 intron-encoded endonuclease phrog_4645 endonuclease DNA, RNA and nucleotide metabolism 1 93271 94239
APC42879.1 KX532239_p14 N-acetylmuramoyl-L-alanine amidase phrog_12367 endolysin lysis -1 6448 7206
APC42941.1 KX532239_p76 hypothetical protein phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 64029 65342
APC43042.1 KX532239_p177 hypothetical protein phrog_98 unknown function unknown function -1 128080 128433
APC42954.1 KX532239_p89 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 75779 76372
APC43013.1 KX532239_p148 hypothetical protein phrog_467 unknown function unknown function 1 116529 116936
APC42885.1 KX532239_p20 antirepressor protein phrog_373 anti-repressor transcription regulation -1 10024 10887
APC42866.1 KX532239_p1 hypothetical protein phrog_2811 virion structural protein head and packaging -1 606 869
APC42976.1 KX532239_p111 hypothetical protein phrog_97 UvsX-like recombinase other 1 94387 95313
APC42955.1 KX532239_p90 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 76386 77462
APC42973.1 KX532239_p108 hypothetical protein phrog_2672 unknown function unknown function 1 91480 92655
APC42892.1 KX532239_p27 hypothetical protein phrog_5340 terminase large subunit head and packaging 1 13579 13818
APC43012.1 KX532239_p147 hypothetical protein phrog_4538 unknown function unknown function 1 114096 115130
APC42925.1 KX532239_p60 hypothetical protein phrog_8949 unknown function unknown function 1 42670 43494
APC42899.1 KX532239_p34 hypothetical protein phrog_1116 unknown function unknown function 1 19727 20206
APC43022.1 KX532239_p157 hypothetical protein phrog_9163 unknown function unknown function 1 119223 119531
APC42940.1 KX532239_p75 DNA helicase phrog_14619 DNA helicase DNA, RNA and nucleotide metabolism 1 63347 63802
APC42898.1 KX532239_p33 hypothetical protein phrog_1917 virion structural protein head and packaging 1 18774 19574
APC43008.1 KX532239_p143 hypothetical protein phrog_7235 unknown function unknown function 1 112263 112460
APC42871.1 KX532239_p6 hypothetical protein phrog_23790 unknown function unknown function -1 3316 3714
APC43052.1 KX532239_p187 hypothetical protein phrog_152 RinB-like transcriptional activator transcription regulation -1 132928 133068
APC42894.1 KX532239_p29 terminase large subunit phrog_34048 terminase large subunit head and packaging 1 15520 15687
APC42905.1 KX532239_p40 hypothetical protein phrog_1028 head maturation protease head and packaging 1 24391 25164
APC42997.1 KX532239_p132 hypothetical protein phrog_3128 unknown function unknown function 1 107043 107327
APC43038.1 KX532239_p173 hypothetical protein phrog_3549 unknown function unknown function 1 126215 126439
APC43018.1 KX532239_p153 hypothetical protein phrog_17940 unknown function unknown function 1 118006 118206
APC42950.1 KX532239_p85 hypothetical protein phrog_2773 unknown function unknown function 1 71680 71946
APC43049.1 KX532239_p184 hypothetical protein phrog_12286 unknown function unknown function -1 131073 131297
APC42998.1 KX532239_p133 hypothetical protein phrog_2988 unknown function unknown function 1 107340 107633
APC43051.1 KX532239_p186 nuclease phrog_452 endonuclease DNA, RNA and nucleotide metabolism -1 132464 132829
APC43001.1 KX532239_p136 hypothetical protein phrog_13381 unknown function unknown function 1 108394 108891
APC42944.1 KX532239_p79 hypothetical protein phrog_11461 unknown function unknown function 1 68370 68627
APC42983.1 KX532239_p118 hypothetical protein phrog_2721 unknown function unknown function 1 98154 98927
APC42952.1 KX532239_p87 hypothetical protein phrog_506 transposase integration and excision 1 72857 74140
APC42876.1 KX532239_p11 hypothetical protein phrog_2896 unknown function unknown function -1 5265 5903
APC43040.1 KX532239_p175 hypothetical protein phrog_17429 unknown function unknown function -1 127263 127829
APC43000.1 KX532239_p135 hypothetical protein phrog_13794 unknown function unknown function 1 108014 108259
APC42934.1 KX532239_p69 hypothetical protein phrog_1394 virion structural protein head and packaging 1 55391 55912
APC42915.1 KX532239_p50 hypothetical protein phrog_1151 unknown function unknown function 1 33004 33210
APC42909.1 KX532239_p44 hypothetical protein phrog_772 tail fiber protein tail 1 27966 28715
APC43027.1 KX532239_p162 hypothetical protein phrog_21987 unknown function unknown function 1 121531 121740
APC42963.1 KX532239_p98 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 83411 84127
APC42875.1 KX532239_p10 hypothetical protein phrog_2706 unknown function unknown function -1 5063 5251
APC42960.1 KX532239_p95 ribonucleotide reductase of class Ia (aerobic) alpha subunit phrog_12229 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 80234 81967
APC42920.1 KX532239_p55 hypothetical protein phrog_2754 virion structural protein head and packaging 1 36864 37172
APC42937.1 KX532239_p72 capsid and scaffold protein phrog_2665 virion structural protein head and packaging 1 59602 61515
APC42986.1 KX532239_p121 hypothetical protein phrog_1080 unknown function unknown function 1 100587 101120
APC43047.1 KX532239_p182 hypothetical protein phrog_2981 unknown function unknown function -1 130083 130643
APC42874.1 KX532239_p9 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 4645 5070
APC43029.1 KX532239_p164 hypothetical protein phrog_1709 unknown function unknown function 1 122178 122459
APC43030.1 KX532239_p165 hypothetical protein phrog_12518 unknown function unknown function 1 123269 123676
APC42913.1 KX532239_p48 hypothetical protein phrog_1127 unknown function unknown function 1 31529 32149
APC43028.1 KX532239_p163 hypothetical protein phrog_13773 unknown function unknown function 1 121743 122051
APC42968.1 KX532239_p103 hypothetical protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 86224 86526
APC43046.1 KX532239_p181 hypothetical protein phrog_2948 unknown function unknown function -1 129417 129956
APC42916.1 KX532239_p51 major tail sheath phrog_279 tail sheath tail 1 33233 34993
APC43045.1 KX532239_p180 hypothetical protein phrog_467 unknown function unknown function -1 129007 129414
APC42995.1 KX532239_p130 hypothetical protein phrog_3157 unknown function unknown function 1 106521 106769
APC42929.1 KX532239_p64 hypothetical protein phrog_1011 virion structural protein head and packaging 1 49436 50287
APC42981.1 KX532239_p116 hypothetical protein phrog_1696 major tail protein tail 1 97595 97807
APC43024.1 KX532239_p159 hypothetical protein phrog_12588 unknown function unknown function 1 120108 120467
APC42966.1 KX532239_p101 thioredoxin-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 85086 85406
APC42948.1 KX532239_p83 adenine-specific methyltransferase phrog_67 DNA methyltransferase other 1 69888 70577
APC43053.1 KX532239_p188 hypothetical protein phrog_2861 unknown function unknown function -1 133065 133388
APC42951.1 KX532239_p86 exonuclease phrog_21388 exonuclease DNA, RNA and nucleotide metabolism 1 71939 72382
APC43036.1 KX532239_p171 hypothetical protein phrog_14210 unknown function unknown function 1 125426 125716
APC42942.1 KX532239_p77 Rep protein phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 65352 66938
APC42979.1 KX532239_p114 hypothetical protein phrog_1240 Ig domain containing protein other 1 96412 97044
APC42953.1 KX532239_p88 hypothetical protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 74317 75795
APC43005.1 KX532239_p140 hypothetical protein phrog_13842 unknown function unknown function 1 110471 110728
APC42907.1 KX532239_p42 major capsid protein phrog_752 major head protein head and packaging 1 26228 27619
APC42991.1 KX532239_p126 hypothetical protein phrog_1104 virion structural protein head and packaging 1 104337 104795
APC42900.1 KX532239_p35 hypothetical protein phrog_3094 unknown function unknown function 1 20249 21106
APC42939.1 KX532239_p74 capsid and scaffold protein phrog_2691 tail fiber protein tail 1 61895 63259
APC42911.1 KX532239_p46 hypothetical protein phrog_38131 unknown function unknown function 1 30532 30636
APC42924.1 KX532239_p59 hypothetical protein phrog_10341 endolysin lysis 1 41742 42611
APC42881.1 KX532239_p16 holin phrog_962 holin lysis -1 8137 8637
APC42957.1 KX532239_p92 hypothetical protein phrog_1095 unknown function unknown function 1 77831 78268
APC43011.1 KX532239_p146 hypothetical protein phrog_13526 unknown function unknown function 1 113724 114074
APC43050.1 KX532239_p185 DNA binding protein phrog_14652 DNA binding protein DNA, RNA and nucleotide metabolism -1 131290 132075
APC42993.1 KX532239_p128 hypothetical protein phrog_2726 unknown function unknown function 1 105308 105943
APC42933.1 KX532239_p68 hypothetical protein phrog_2386 virion structural protein head and packaging 1 52585 55287
APC43032.1 KX532239_p167 hypothetical protein phrog_2601 unknown function unknown function 1 124245 124559
APC42982.1 KX532239_p117 hypothetical protein phrog_2673 unknown function unknown function 1 97903 98157
APC42926.1 KX532239_p61 hypothetical protein phrog_1015 tail protein with lysin activity tail 1 43546 45978
APC42971.1 KX532239_p106 DNA polymerase phrog_5995 DNA polymerase DNA, RNA and nucleotide metabolism 1 90246 90902
APC42945.1 KX532239_p80 hypothetical protein phrog_12198 unknown function unknown function 1 68697 68942
APC42977.1 KX532239_p112 hypothetical protein phrog_1089 unknown function unknown function 1 95306 95659
APC43037.1 KX532239_p172 hypothetical protein phrog_8830 unknown function unknown function 1 125860 126201
APC42912.1 KX532239_p47 hypothetical protein phrog_1004 virion structural protein head and packaging 1 30654 31529
APC42962.1 KX532239_p97 hypothetical protein phrog_29665 unknown function unknown function 1 82798 83250
APC42946.1 KX532239_p81 DNA methylase phrog_67 DNA methyltransferase other 1 68952 69671
APC42980.1 KX532239_p115 major tail protein phrog_341 major tail protein tail 1 97066 97578
APC42930.1 KX532239_p65 hypothetical protein phrog_1073 unknown function unknown function 1 50287 50808
APC42910.1 KX532239_p45 transposase phrog_506 transposase integration and excision 1 29154 30362
APC43014.1 KX532239_p149 hypothetical protein phrog_16365 unknown function unknown function 1 117061 117270
APC43054.1 KX532239_p189 hypothetical protein phrog_2708 nucleotide kinase other -1 133375 133791
APC42989.1 KX532239_p124 hypothetical protein phrog_1113 unknown function unknown function 1 102361 103215
APC43021.1 KX532239_p156 hypothetical protein phrog_18429 unknown function unknown function 1 118885 119223
APC42904.1 KX532239_p39 hypothetical protein phrog_11117 portal protein head and packaging 1 23522 24223
APC43057.1 KX532239_p192 hypothetical protein phrog_28566 unknown function unknown function -1 134256 135287
APC43048.1 KX532239_p183 hypothetical protein phrog_4178 major tail protein tail -1 130660 130983
APC42918.1 KX532239_p53 hypothetical protein phrog_2701 unknown function unknown function 1 36184 36321
APC42868.1 KX532239_p3 hypothetical protein phrog_2642 unknown function unknown function -1 1031 1654
APC42877.1 KX532239_p12 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 5896 6111
APC42978.1 KX532239_p113 hypothetical protein phrog_1025 RNA polymerase sigma factor transcription regulation 1 95646 96305
APC42961.1 KX532239_p96 hypothetical protein phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 82262 82744
APC42917.1 KX532239_p52 hypothetical protein phrog_985 virion structural protein head and packaging 1 35056 35394
APC42969.1 KX532239_p104 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 86604 89129
APC43039.1 KX532239_p174 hypothetical protein phrog_8830 unknown function unknown function 1 126544 126888
APC42903.1 KX532239_p38 hypothetical protein phrog_15361 portal protein head and packaging 1 21902 22894
APC43003.1 KX532239_p138 hypothetical protein phrog_3453 unknown function unknown function 1 109559 109765
APC43007.1 KX532239_p142 hypothetical protein phrog_32255 unknown function unknown function 1 111635 112159
APC42906.1 KX532239_p41 hypothetical protein phrog_1133 unknown function unknown function 1 25178 26143
APC42967.1 KX532239_p102 hypothetical protein phrog_1054 unknown function unknown function 1 85613 86215
APC42949.1 KX532239_p84 exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 70647 71678
APC42901.1 KX532239_p36 hypothetical protein phrog_3937 unknown function unknown function 1 21233 21526
APC42878.1 KX532239_p13 hypothetical protein phrog_2770 unknown function unknown function -1 6125 6346
APC43056.1 KX532239_p191 hypothetical protein phrog_2966 unknown function unknown function -1 134095 134256
APC42999.1 KX532239_p134 hypothetical protein phrog_3143 unknown function unknown function 1 107697 108011
APC42921.1 KX532239_p56 hypothetical protein phrog_1038 tail assembly chaperone tail 1 37261 37689
APC42947.1 KX532239_p82 hypothetical protein phrog_9725 unknown function unknown function 1 69640 69888
APC43004.1 KX532239_p139 pentapeptide repeat family protein phrog_923 unknown function unknown function 1 109765 110484
APC43017.1 KX532239_p152 hypothetical protein phrog_6981 unknown function unknown function 1 117766 118005
APC42958.1 KX532239_p93 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 78258 78866
APC42974.1 KX532239_p109 hypothetical protein phrog_8290 RecA or Sak4, length ? other 1 92718 92942
APC42890.1 KX532239_p25 hypothetical protein phrog_1321 unknown function unknown function 1 12871 13152
APC42882.1 KX532239_p17 hypothetical protein phrog_987 unknown function unknown function -1 8719 8907
APC43043.1 KX532239_p178 hypothetical protein phrog_22346 unknown function unknown function -1 128430 128657
APC42972.1 KX532239_p107 hypothetical protein phrog_1069 unknown function unknown function 1 90927 91409
APC42887.1 KX532239_p22 hypothetical protein phrog_937 hemolysin other -1 11392 11724
APC43015.1 KX532239_p150 nuclease singleton unknown function unknown function 1 117381 117512
APC42970.1 KX532239_p105 hypothetical protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism 1 89372 90022
APC42902.1 KX532239_p37 hypothetical protein phrog_1108 portal protein head and packaging 1 21532 21897
APC43016.1 KX532239_p151 hypothetical protein phrog_3204 unknown function unknown function 1 117515 117700
APC43033.1 KX532239_p168 hypothetical protein phrog_15099 unknown function unknown function 1 124638 124793
APC42895.1 KX532239_p30 hypothetical protein phrog_675 terminase large subunit head and packaging 1 16185 17378
APC42891.1 KX532239_p26 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 13149 13562
APC43009.1 KX532239_p144 hypothetical protein phrog_467 unknown function unknown function 1 112460 112852
APC42914.1 KX532239_p49 hypothetical protein phrog_1000 unknown function unknown function 1 32168 33004
APC43034.1 KX532239_p169 hypothetical protein phrog_10311 unknown function unknown function 1 124795 125028
APC42936.1 KX532239_p71 hypothetical protein phrog_1074 unknown function unknown function 1 59442 59612
APC42990.1 KX532239_p125 hypothetical protein phrog_1007 unknown function unknown function 1 103588 104319
APC42886.1 KX532239_p21 hypothetical protein phrog_1215 unknown function unknown function -1 11166 11381
APC42965.1 KX532239_p100 hypothetical protein phrog_2797 unknown function unknown function 1 84776 85102
APC42985.1 KX532239_p120 hypothetical protein phrog_2892 unknown function unknown function 1 100185 100514
APC42923.1 KX532239_p58 DNA transfer protein phrog_1047 tail associated lysin tail 1 38323 41286
APC42897.1 KX532239_p32 hypothetical protein singleton unknown function unknown function 1 18597 18758
APC42889.1 KX532239_p24 hypothetical protein phrog_5547 membrane protein moron, auxiliary metabolic gene and host takeover 1 12627 12893
APC43006.1 KX532239_p141 hypothetical protein phrog_17473 unknown function unknown function 1 110722 111618
APC42927.1 KX532239_p62 hypothetical protein phrog_2677 tail protein with lysin activity tail 1 45984 46877
APC42884.1 KX532239_p19 hypothetical protein phrog_1257 ribosome associated inhibitor A; zinc finger domain moron, auxiliary metabolic gene and host takeover -1 9711 9926
APC42872.1 KX532239_p7 hypothetical protein phrog_2995 unknown function unknown function -1 3754 4356
APC42919.1 KX532239_p54 hypothetical protein phrog_1905 unknown function unknown function 1 36358 36807
APC42996.1 KX532239_p131 hypothetical protein phrog_13266 unknown function unknown function 1 106779 107042
APC43002.1 KX532239_p137 hypothetical protein phrog_11752 unknown function unknown function 1 109002 109553
APC42988.1 KX532239_p123 hypothetical protein phrog_2356 unknown function unknown function 1 101855 102361
APC42959.1 KX532239_p94 ribonucleotide reductase of class Ia (aerobic) beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 78881 80218
APC42928.1 KX532239_p63 glycerophosphoryl diester phosphodiesterase phrog_2204 glycerophosphoryl diester phosphodiesterase other 1 46868 49324
APC42964.1 KX532239_p99 hypothetical protein phrog_33412 unknown function unknown function 1 84341 84763
APC42938.1 KX532239_p73 hypothetical protein phrog_2671 tail fiber protein tail 1 61533 61889
APC43055.1 KX532239_p190 hypothetical protein phrog_3048 unknown function unknown function -1 133910 134095
APC42987.1 KX532239_p122 hypothetical protein phrog_984 unknown function unknown function 1 101113 101874
APC42932.1 KX532239_p67 baseplate protein phrog_6 baseplate wedge subunit tail 1 51527 52573
APC43020.1 KX532239_p155 hypothetical protein phrog_16583 unknown function unknown function 1 118412 118750
APC42867.1 KX532239_p2 membrane-bound lytic murein transglycosylase D precursor phrog_1274 lysM motif protein lysis -1 883 1056
APC42896.1 KX532239_p31 hypothetical protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 17600 18520
APC42994.1 KX532239_p129 hypothetical protein phrog_2863 unknown function unknown function 1 105979 106377
APC43010.1 KX532239_p145 hypothetical protein phrog_923 unknown function unknown function 1 112852 113583
APC42870.1 KX532239_p5 hypothetical protein phrog_21952 RNA ligase DNA, RNA and nucleotide metabolism -1 2278 3261
APC43041.1 KX532239_p176 hypothetical protein phrog_2884 unknown function unknown function -1 127844 128083
APC42880.1 KX532239_p15 hypothetical protein phrog_833 endolysin lysis -1 7220 8137
APC43031.1 KX532239_p166 hypothetical protein phrog_27640 unknown function unknown function -1 123928 124041
APC42931.1 KX532239_p66 hypothetical protein phrog_975 baseplate protein tail 1 50808 51512
APC42935.1 KX532239_p70 hypothetical protein phrog_877 unknown function unknown function 1 55932 59390
APC43044.1 KX532239_p179 hypothetical protein phrog_36587 unknown function unknown function -1 128816 128929
APC42888.1 KX532239_p23 hypothetical protein phrog_1481 unknown function unknown function -1 11731 12063
APC43035.1 KX532239_p170 hypothetical protein phrog_3325 TreN-like membrane protein other 1 125110 125256
APC42956.1 KX532239_p91 hypothetical protein phrog_1291 unknown function unknown function 1 77523 77831
APC42992.1 KX532239_p127 hypothetical protein phrog_1303 DNA binding protein DNA, RNA and nucleotide metabolism 1 104860 105297
APC42984.1 KX532239_p119 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 98920 100173
APC43023.1 KX532239_p158 hypothetical protein phrog_1486 membrane protein moron, auxiliary metabolic gene and host takeover 1 119681 120082
APC42873.1 KX532239_p8 membrane protein phrog_3093 unknown function unknown function -1 4370 4633
APC42922.1 KX532239_p57 hypothetical protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 37781 38239
APC43019.1 KX532239_p154 hypothetical protein phrog_16557 unknown function unknown function 1 118255 118398
APC43026.1 KX532239_p161 hypothetical protein phrog_22397 unknown function unknown function 1 121259 121516
APC42883.1 KX532239_p18 hypothetical protein singleton unknown function unknown function 1 9244 9456
APC42893.1 KX532239_p28 hypothetical protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14791 15453