| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX550065 |
Definition |
Streptococcus phage SpGS-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
37631 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
38.27 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AOQ27432.1 | KX550065_p33 | minor capsid protein | phrog_533 | portal protein | head and packaging | 1 | 17265 | 18833 |
| AOQ27441.1 | KX550065_p42 | minor capsid protein 3 | phrog_913 | minor head protein | head and packaging | 1 | 23172 | 23579 |
| AOQ27404.1 | KX550065_p5 | Cro repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2858 | 3052 |
| AOQ27433.1 | KX550065_p34 | hypothetical protein | phrog_3755 | unknown function | unknown function | 1 | 18820 | 18993 |
| AOQ27419.1 | KX550065_p20 | hypothetical protein | phrog_834 | unknown function | unknown function | 1 | 10215 | 10529 |
| AOQ27450.1 | KX550065_p51 | holin 1 | phrog_199 | holin | lysis | 1 | 35797 | 36213 |
| AOQ27444.1 | KX550065_p45 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 24591 | 25160 |
| AOQ27401.1 | KX550065_p2 | hypothetical protein | phrog_9859 | unknown function | unknown function | -1 | 1445 | 1819 |
| AOQ27439.1 | KX550065_p40 | minor capsid protein 1 | phrog_793 | head-tail adaptor | connector | 1 | 22457 | 22828 |
| AOQ27438.1 | KX550065_p39 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 22075 | 22467 |
| AOQ27413.1 | KX550065_p14 | C5 cytosine methyltransferase | phrog_116 | DNA methyltransferase | other | 1 | 7729 | 8862 |
| AOQ27412.1 | KX550065_p13 | ssDNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7128 | 7703 |
| AOQ27422.1 | KX550065_p23 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 11204 | 11464 |
| AOQ27417.1 | KX550065_p18 | crossover junction endodeoxyribonuclease RusA-like protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9556 | 9957 |
| AOQ27445.1 | KX550065_p46 | tail-length tape measure protein | phrog_1686 | tail length tape measure protein | tail | 1 | 25153 | 28434 |
| AOQ27451.1 | KX550065_p52 | holin 2 | phrog_608 | holin | lysis | 1 | 36217 | 36549 |
| AOQ27429.1 | KX550065_p30 | hypothetical protein | phrog_5057 | unknown function | unknown function | 1 | 14547 | 15293 |
| AOQ27420.1 | KX550065_p21 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 10531 | 11046 |
| AOQ27408.1 | KX550065_p9 | hypothetical protein | phrog_2715 | unknown function | unknown function | 1 | 4786 | 5238 |
| AOQ27405.1 | KX550065_p6 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 3054 | 3752 |
| AOQ27440.1 | KX550065_p41 | minor capsid protein 2 | phrog_556 | minor head protein | head and packaging | 1 | 22828 | 23172 |
| AOQ27414.1 | KX550065_p15 | hypothetical protein | phrog_3947 | unknown function | unknown function | 1 | 8906 | 9109 |
| AOQ27416.1 | KX550065_p17 | hypothetical protein | phrog_774 | unknown function | unknown function | 1 | 9333 | 9545 |
| AOQ27452.1 | KX550065_p53 | autolysin LytA-like protein | phrog_1110 | endolysin | lysis | 1 | 36553 | 37509 |
| AOQ27436.1 | KX550065_p37 | major capsid protein | phrog_840 | major head protein | head and packaging | 1 | 20907 | 21788 |
| AOQ27425.1 | KX550065_p26 | hypothetical protein | phrog_3476 | unknown function | unknown function | 1 | 12329 | 12700 |
| AOQ27449.1 | KX550065_p50 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 35524 | 35787 |
| AOQ27400.1 | KX550065_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 184 | 1326 |
| AOQ27446.1 | KX550065_p47 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 28431 | 29945 |
| AOQ27409.1 | KX550065_p10 | ssDNA-binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5244 | 5945 |
| AOQ27403.1 | KX550065_p4 | C1 repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2235 | 2591 |
| AOQ27442.1 | KX550065_p43 | major tail shaft protein | phrog_820 | major tail protein | tail | 1 | 23576 | 24025 |
| AOQ27418.1 | KX550065_p19 | hypothetical protein | phrog_4706 | unknown function | unknown function | 1 | 9959 | 10165 |
| AOQ27410.1 | KX550065_p11 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 5948 | 6940 |
| AOQ27421.1 | KX550065_p22 | hypothetical protein | phrog_4252 | unknown function | unknown function | 1 | 11046 | 11207 |
| AOQ27423.1 | KX550065_p24 | hypothetical protein | phrog_2131 | unknown function | unknown function | 1 | 11461 | 11883 |
| AOQ27428.1 | KX550065_p29 | ParB-like nuclease domain protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 13472 | 14566 |
| AOQ27406.1 | KX550065_p7 | DNA-binding protein | phrog_1456 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 3938 | 4279 |
| AOQ27415.1 | KX550065_p16 | hypothetical protein | phrog_16580 | unknown function | unknown function | 1 | 9119 | 9316 |
| AOQ27407.1 | KX550065_p8 | hypothetical protein | phrog_2273 | unknown function | unknown function | 1 | 4436 | 4702 |
| AOQ27443.1 | KX550065_p44 | hypothetical protein | phrog_1061 | unknown function | unknown function | 1 | 24090 | 24578 |
| AOQ27427.1 | KX550065_p28 | hypothetical protein | phrog_3511 | unknown function | unknown function | 1 | 13014 | 13406 |
| AOQ27435.1 | KX550065_p36 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 20326 | 20889 |
| AOQ27448.1 | KX550065_p49 | structural protein | phrog_372 | tail protein | tail | 1 | 33416 | 35464 |
| AOQ27434.1 | KX550065_p35 | minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 19036 | 20187 |
| AOQ27411.1 | KX550065_p12 | hypothetical protein | phrog_4139 | unknown function | unknown function | 1 | 6962 | 7138 |
| AOQ27402.1 | KX550065_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 1833 | 2213 |
| AOQ27431.1 | KX550065_p32 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 15942 | 17252 |
| AOQ27424.1 | KX550065_p25 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 11895 | 12332 |
| AOQ27447.1 | KX550065_p48 | tail protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 29947 | 33405 |
| AOQ27426.1 | KX550065_p27 | hypothetical protein | phrog_2003 | unknown function | unknown function | 1 | 12721 | 13014 |
| AOQ27437.1 | KX550065_p38 | hypothetical protein | phrog_2910 | unknown function | unknown function | 1 | 21799 | 22032 |
| AOQ27430.1 | KX550065_p31 | hypothetical protein | phrog_2412 | unknown function | unknown function | 1 | 15497 | 15952 |