| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX574454 |
Definition |
Mycobacterium phage PacerPaul, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
52732 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
93 |
%GC |
63.57 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AOQ27816.1 | KX574454_p79 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 47357 | 47761 |
| AOQ27757.1 | KX574454_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11310 | 11822 |
| AOQ27802.1 | KX574454_p63 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41452 | 42273 |
| AOQ27766.1 | KX574454_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15831 | 16630 |
| AOQ27820.1 | KX574454_p84 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 49330 | 49518 |
| AOQ27748.1 | KX574454_p5 | tail protein | phrog_1197 | tail protein | tail | 1 | 2519 | 3607 |
| AOQ27754.1 | KX574454_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7247 | 8935 |
| AOQ27779.1 | KX574454_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28973 | 29269 |
| AOQ27777.1 | KX574454_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28072 | 28263 |
| AOQ27817.1 | KX574454_p80 | repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 47794 | 48480 |
| AOQ27761.1 | KX574454_p18 | head-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 13597 | 13959 |
| AOQ27824.1 | KX574454_p88 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 49977 | 50294 |
| AOQ27829.1 | KX574454_p93 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 52158 | 52361 |
| AOQ27803.1 | KX574454_p64 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 42273 | 42449 |
| AOQ27818.1 | KX574454_p81 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48568 | 48867 |
| AOQ27772.1 | KX574454_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23656 | 24003 |
| AOQ27809.1 | KX574454_p70 | DNA binding domain protein | phrog_4285 | transposase | integration and excision | -1 | 44502 | 45212 |
| AOQ27813.1 | KX574454_p76 | hypothetical protein | phrog_20207 | unknown function | unknown function | -1 | 46533 | 46682 |
| AOQ27828.1 | KX574454_p92 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 51771 | 52112 |
| AOQ27812.1 | KX574454_p75 | hypothetical protein | phrog_21752 | unknown function | unknown function | -1 | 46285 | 46536 |
| AOQ27756.1 | KX574454_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10371 | 11252 |
| AOQ27763.1 | KX574454_p20 | head-tail connector | phrog_123 | tail terminator | connector | 1 | 14358 | 14804 |
| AOQ27780.1 | KX574454_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 29421 | 30920 |
| AOQ27793.1 | KX574454_p53 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38596 | 38994 |
| AOQ27774.1 | KX574454_p31 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 24325 | 26178 |
| AOQ27769.1 | KX574454_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21191 | 21373 |
| AOQ27759.1 | KX574454_p16 | head-tail connector | phrog_1857 | head-tail connector protein | connector | 1 | 12921 | 13148 |
| AOQ27796.1 | KX574454_p57 | hypothetical protein | phrog_13342 | unknown function | unknown function | -1 | 40016 | 40153 |
| AOQ27770.1 | KX574454_p27 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 21373 | 23175 |
| AOQ27790.1 | KX574454_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36560 | 36700 |
| AOQ27831.1 | KX574454_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28529 | 28852 |
| AOQ27795.1 | KX574454_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39852 | 40016 |
| AOQ27773.1 | KX574454_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24000 | 24299 |
| AOQ27747.1 | KX574454_p4 | hypothetical protein | phrog_20136 | unknown function | unknown function | 1 | 1896 | 2147 |
| AOQ27814.1 | KX574454_p77 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 46744 | 47049 |
| AOQ27807.1 | KX574454_p68 | DNA methylase | phrog_111 | DNA methyltransferase | other | -1 | 43089 | 43616 |
| AOQ27771.1 | KX574454_p28 | minor tail subunit | phrog_352 | minor tail protein | tail | 1 | 23213 | 23659 |
| AOQ27822.1 | KX574454_p86 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 49682 | 49834 |
| AOQ27781.1 | KX574454_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31041 | 31313 |
| AOQ27762.1 | KX574454_p19 | head-tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13959 | 14354 |
| AOQ27821.1 | KX574454_p85 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49518 | 49685 |
| AOQ27791.1 | KX574454_p51 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36705 | 38423 |
| AOQ27776.1 | KX574454_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27736 | 28062 |
| AOQ27787.1 | KX574454_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35115 | 35606 |
| AOQ27746.1 | KX574454_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1166 | 1606 |
| AOQ27765.1 | KX574454_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15831 | 16208 |
| AOQ27801.1 | KX574454_p62 | hypothetical protein | phrog_1941 | unknown function | unknown function | -1 | 41123 | 41455 |
| AOQ27785.1 | KX574454_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32991 | 34817 |
| AOQ27806.1 | KX574454_p67 | DNA binding domain protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42862 | 43044 |
| AOQ27823.1 | KX574454_p87 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 49831 | 49980 |
| AOQ27800.1 | KX574454_p61 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40827 | 41105 |
| AOQ27808.1 | KX574454_p69 | RecB-like nuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43693 | 44505 |
| AOQ27752.1 | KX574454_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4857 | 6269 |
| AOQ27810.1 | KX574454_p73 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 45554 | 46015 |
| AOQ27805.1 | KX574454_p66 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42565 | 42858 |
| AOQ27786.1 | KX574454_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34854 | 35084 |
| AOQ27749.1 | KX574454_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3617 | 4318 |
| AOQ27792.1 | KX574454_p52 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38420 | 38599 |
| AOQ27778.1 | KX574454_p35 | hypothetical protein | phrog_20812 | unknown function | unknown function | 1 | 28260 | 28559 |
| AOQ27789.1 | KX574454_p49 | RNA polymerase sigma factor | phrog_354 | sigma-K factor | transcription regulation | -1 | 35782 | 36567 |
| AOQ27753.1 | KX574454_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6259 | 7227 |
| AOQ27755.1 | KX574454_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8932 | 10374 |
| AOQ27784.1 | KX574454_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32608 | 32994 |
| AOQ27836.1 | KX574454_p40 | hypothetical protein | phrog_28124 | unknown function | unknown function | -1 | 31310 | 32056 |
| AOQ27782.1 | KX574454_p42 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32223 | 32318 |
| AOQ27834.1 | KX574454_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45205 | 45372 |
| AOQ27830.1 | KX574454_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 835 | 1131 |
| AOQ27832.1 | KX574454_p41 | hypothetical protein | phrog_15070 | unknown function | unknown function | -1 | 32056 | 32154 |
| AOQ27783.1 | KX574454_p43 | hypothetical protein | phrog_9480 | unknown function | unknown function | -1 | 32315 | 32611 |
| AOQ27758.1 | KX574454_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11832 | 12842 |
| AOQ27797.1 | KX574454_p58 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40150 | 40284 |
| AOQ27794.1 | KX574454_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38991 | 39512 |
| AOQ27804.1 | KX574454_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42446 | 42568 |
| AOQ27751.1 | KX574454_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4600 | 4857 |
| AOQ27750.1 | KX574454_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4332 | 4592 |
| AOQ27798.1 | KX574454_p59 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40281 | 40757 |
| AOQ27825.1 | KX574454_p89 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 50597 | 51271 |
| AOQ27768.1 | KX574454_p25 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 19137 | 21194 |
| AOQ27819.1 | KX574454_p83 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49130 | 49333 |
| AOQ27837.1 | KX574454_p82 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 48864 | 49133 |
| AOQ27799.1 | KX574454_p60 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40744 | 40830 |
| AOQ27826.1 | KX574454_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51338 | 51568 |
| AOQ27833.1 | KX574454_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39358 | 39873 |
| AOQ27775.1 | KX574454_p32 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26171 | 27649 |
| AOQ27815.1 | KX574454_p78 | hypothetical protein | phrog_3851 | unknown function | unknown function | -1 | 47070 | 47360 |
| AOQ27835.1 | KX574454_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45395 | 45514 |
| AOQ27745.1 | KX574454_p1 | hypothetical protein | phrog_13643 | helicase | DNA, RNA and nucleotide metabolism | 1 | 536 | 838 |
| AOQ27811.1 | KX574454_p74 | hypothetical protein | phrog_21484 | unknown function | unknown function | -1 | 46034 | 46288 |
| AOQ27764.1 | KX574454_p21 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14813 | 15661 |
| AOQ27760.1 | KX574454_p17 | head-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13148 | 13597 |
| AOQ27767.1 | KX574454_p24 | tape measure | phrog_305 | tail length tape measure protein | tail | 1 | 16642 | 19113 |
| AOQ27827.1 | KX574454_p91 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51596 | 51694 |
| AOQ27788.1 | KX574454_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35603 | 35785 |